data_8A4C # _model_server_result.job_id XoZNBSD7B_EMkU36-hxxlw _model_server_result.datetime_utc '2024-12-22 02:09:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8A4C # _exptl.entry_id 8A4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.9 _cell.angle_gamma 90 _cell.entry_id 8A4C _cell.length_a 188.81 _cell.length_b 59.22 _cell.length_c 109.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 38 B THR 36 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 B OG1 THR 56 B THR 54 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 E O1G GNP . B GNP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 E O2B GNP . B GNP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc5 F MG MG . B MG 302 1_555 J O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 F MG MG . B MG 302 1_555 J O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 D OG1 THR 38 D THR 36 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 D OG1 THR 56 D THR 54 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc9 G O3G GNP . D GNP 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 G O2B GNP . D GNP 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc11 H MG MG . D MG 302 1_555 L O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc12 H MG MG . D MG 302 1_555 L O HOH . D HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8A4C _atom_sites.fract_transf_matrix[1][1] 0.005296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP B 1 301 1 GNP GNP . F 4 MG B 1 302 1 MG MG . G 3 GNP D 1 301 2 GNP GNP . H 4 MG D 1 302 2 MG MG . I 5 HOH A 1 301 32 HOH HOH . I 5 HOH A 2 302 21 HOH HOH . I 5 HOH A 3 303 2 HOH HOH . I 5 HOH A 4 304 7 HOH HOH . I 5 HOH A 5 305 35 HOH HOH . I 5 HOH A 6 306 18 HOH HOH . I 5 HOH A 7 307 20 HOH HOH . I 5 HOH A 8 308 24 HOH HOH . I 5 HOH A 9 309 23 HOH HOH . J 5 HOH B 1 401 5 HOH HOH . J 5 HOH B 2 402 36 HOH HOH . J 5 HOH B 3 403 37 HOH HOH . J 5 HOH B 4 404 29 HOH HOH . J 5 HOH B 5 405 26 HOH HOH . J 5 HOH B 6 406 6 HOH HOH . J 5 HOH B 7 407 31 HOH HOH . J 5 HOH B 8 408 3 HOH HOH . J 5 HOH B 9 409 10 HOH HOH . J 5 HOH B 10 410 25 HOH HOH . K 5 HOH C 1 301 22 HOH HOH . K 5 HOH C 2 302 8 HOH HOH . K 5 HOH C 3 303 13 HOH HOH . K 5 HOH C 4 304 17 HOH HOH . K 5 HOH C 5 305 34 HOH HOH . K 5 HOH C 6 306 12 HOH HOH . K 5 HOH C 7 307 16 HOH HOH . L 5 HOH D 1 401 30 HOH HOH . L 5 HOH D 2 402 39 HOH HOH . L 5 HOH D 3 403 27 HOH HOH . L 5 HOH D 4 404 28 HOH HOH . L 5 HOH D 5 405 33 HOH HOH . L 5 HOH D 6 406 1 HOH HOH . L 5 HOH D 7 407 38 HOH HOH . L 5 HOH D 8 408 15 HOH HOH . L 5 HOH D 9 409 19 HOH HOH . L 5 HOH D 10 410 4 HOH HOH . L 5 HOH D 11 411 11 HOH HOH . L 5 HOH D 12 412 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 3 -50.563 -16.883 46.532 1 47.62 ? PG GNP 301 B 1 HETATM 2 O O1G GNP . . . E 3 -50.124 -15.717 45.713 1 47.66 ? O1G GNP 301 B 1 HETATM 3 O O2G GNP . . . E 3 -52.069 -16.81 46.77 1 43.17 ? O2G GNP 301 B 1 HETATM 4 O O3G GNP . . . E 3 -49.81 -16.867 47.89 1 54.26 ? O3G GNP 301 B 1 HETATM 5 N N3B GNP . . . E 3 -50.162 -18.31 45.69 1 50.41 ? N3B GNP 301 B 1 HETATM 6 P PB GNP . . . E 3 -50.931 -18.68 44.292 1 46.96 ? PB GNP 301 B 1 HETATM 7 O O1B GNP . . . E 3 -52.371 -19.053 44.552 1 43.54 ? O1B GNP 301 B 1 HETATM 8 O O2B GNP . . . E 3 -50.872 -17.501 43.357 1 44.57 ? O2B GNP 301 B 1 HETATM 9 O O3A GNP . . . E 3 -50.148 -19.969 43.639 1 48.12 ? O3A GNP 301 B 1 HETATM 10 P PA GNP . . . E 3 -49.005 -19.844 42.531 1 51.83 ? PA GNP 301 B 1 HETATM 11 O O1A GNP . . . E 3 -49.691 -19.452 41.223 1 46.7 ? O1A GNP 301 B 1 HETATM 12 O O2A GNP . . . E 3 -47.922 -18.934 42.941 1 47.58 ? O2A GNP 301 B 1 HETATM 13 O O5' GNP . . . E 3 -48.474 -21.32 42.462 1 52.95 ? O5' GNP 301 B 1 HETATM 14 C C5' GNP . . . E 3 -47.913 -21.97 43.623 1 52.14 ? C5' GNP 301 B 1 HETATM 15 C C4' GNP . . . E 3 -46.997 -23.102 43.217 1 50.09 ? C4' GNP 301 B 1 HETATM 16 O O4' GNP . . . E 3 -47.764 -24.158 42.604 1 51.39 ? O4' GNP 301 B 1 HETATM 17 C C3' GNP . . . E 3 -45.874 -22.759 42.237 1 58.59 ? C3' GNP 301 B 1 HETATM 18 O O3' GNP . . . E 3 -44.681 -23.448 42.589 1 61.26 ? O3' GNP 301 B 1 HETATM 19 C C2' GNP . . . E 3 -46.416 -23.25 40.892 1 58.58 ? C2' GNP 301 B 1 HETATM 20 O O2' GNP . . . E 3 -45.371 -23.653 40.016 1 70.13 ? O2' GNP 301 B 1 HETATM 21 C C1' GNP . . . E 3 -47.251 -24.456 41.318 1 53.74 ? C1' GNP 301 B 1 HETATM 22 N N9 GNP . . . E 3 -48.386 -24.716 40.42 1 45.85 ? N9 GNP 301 B 1 HETATM 23 C C8 GNP . . . E 3 -49.374 -23.837 40.068 1 45.08 ? C8 GNP 301 B 1 HETATM 24 N N7 GNP . . . E 3 -50.266 -24.361 39.26 1 48.03 ? N7 GNP 301 B 1 HETATM 25 C C5 GNP . . . E 3 -49.835 -25.664 39.071 1 49.2 ? C5 GNP 301 B 1 HETATM 26 C C6 GNP . . . E 3 -50.382 -26.745 38.28 1 50.78 ? C6 GNP 301 B 1 HETATM 27 O O6 GNP . . . E 3 -51.392 -26.728 37.585 1 49.02 ? O6 GNP 301 B 1 HETATM 28 N N1 GNP . . . E 3 -49.629 -27.896 38.386 1 48.15 ? N1 GNP 301 B 1 HETATM 29 C C2 GNP . . . E 3 -48.489 -28.025 39.132 1 52.5 ? C2 GNP 301 B 1 HETATM 30 N N2 GNP . . . E 3 -47.885 -29.214 39.109 1 51.07 ? N2 GNP 301 B 1 HETATM 31 N N3 GNP . . . E 3 -47.97 -27.037 39.862 1 51.29 ? N3 GNP 301 B 1 HETATM 32 C C4 GNP . . . E 3 -48.683 -25.898 39.785 1 46.92 ? C4 GNP 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #