data_8A4E # _model_server_result.job_id Xwoy8_0jKMGHKyC3Okyl2w _model_server_result.datetime_utc '2024-11-29 05:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8A4E # _exptl.entry_id 8A4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A4E _cell.length_a 41.555 _cell.length_b 41.555 _cell.length_c 132.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 426 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id FMA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FMA _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.765 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 179 n n N1 C10 FMN doub 180 n n C2 O2 FMN doub 181 n n C2 N3 FMN sing 182 n n N3 C4 FMN sing 183 n n N3 HN3 FMN sing 184 n n C4 O4 FMN doub 185 n n C4 C4A FMN sing 186 n n C4A N5 FMN doub 187 n n C4A C10 FMN sing 188 n n N5 C5A FMN sing 189 n n C5A C6 FMN doub 190 n y C5A C9A FMN sing 191 n y C6 C7 FMN sing 192 n y C6 H6 FMN sing 193 n n C7 C7M FMN sing 194 n n C7 C8 FMN doub 195 n y C7M HM71 FMN sing 196 n n C7M HM72 FMN sing 197 n n C7M HM73 FMN sing 198 n n C8 C8M FMN sing 199 n n C8 C9 FMN sing 200 n y C8M HM81 FMN sing 201 n n C8M HM82 FMN sing 202 n n C8M HM83 FMN sing 203 n n C9 C9A FMN doub 204 n y C9 H9 FMN sing 205 n n C9A N10 FMN sing 206 n n N10 C10 FMN sing 207 n n N10 C1' FMN sing 208 n n C1' C2' FMN sing 209 n n C1' "H1'1" FMN sing 210 n n C1' "H1'2" FMN sing 211 n n C2' O2' FMN sing 212 n n C2' C3' FMN sing 213 n n C2' H2' FMN sing 214 n n O2' HO2' FMN sing 215 n n C3' O3' FMN sing 216 n n C3' C4' FMN sing 217 n n C3' H3' FMN sing 218 n n O3' HO3' FMN sing 219 n n C4' O4' FMN sing 220 n n C4' C5' FMN sing 221 n n C4' H4' FMN sing 222 n n O4' HO4' FMN sing 223 n n C5' O5' FMN sing 224 n n C5' "H5'1" FMN sing 225 n n C5' "H5'2" FMN sing 226 n n O5' P FMN sing 227 n n P O1P FMN doub 228 n n P O2P FMN sing 229 n n P O3P FMN sing 230 n n O2P HOP2 FMN sing 231 n n O3P HOP3 FMN sing 232 n n # _atom_sites.entry_id 8A4E _atom_sites.fract_transf_matrix[1][1] 0.024064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMA A 1 601 500 FMA FMA . C 3 FMN A 1 602 500 FMN FMN . D 4 HOH A 1 701 11 HOH HOH . D 4 HOH A 2 702 8 HOH HOH . D 4 HOH A 3 703 22 HOH HOH . D 4 HOH A 4 704 6 HOH HOH . D 4 HOH A 5 705 28 HOH HOH . D 4 HOH A 6 706 12 HOH HOH . D 4 HOH A 7 707 20 HOH HOH . D 4 HOH A 8 708 27 HOH HOH . D 4 HOH A 9 709 10 HOH HOH . D 4 HOH A 10 710 3 HOH HOH . D 4 HOH A 11 711 7 HOH HOH . D 4 HOH A 12 712 33 HOH HOH . D 4 HOH A 13 713 1 HOH HOH . D 4 HOH A 14 714 5 HOH HOH . D 4 HOH A 15 715 13 HOH HOH . D 4 HOH A 16 716 9 HOH HOH . D 4 HOH A 17 717 23 HOH HOH . D 4 HOH A 18 718 2 HOH HOH . D 4 HOH A 19 719 15 HOH HOH . D 4 HOH A 20 720 17 HOH HOH . D 4 HOH A 21 721 14 HOH HOH . D 4 HOH A 22 722 4 HOH HOH . D 4 HOH A 23 723 45 HOH HOH . D 4 HOH A 24 724 43 HOH HOH . D 4 HOH A 25 725 26 HOH HOH . D 4 HOH A 26 726 19 HOH HOH . D 4 HOH A 27 727 21 HOH HOH . D 4 HOH A 28 728 47 HOH HOH . D 4 HOH A 29 729 16 HOH HOH . D 4 HOH A 30 730 41 HOH HOH . D 4 HOH A 31 731 18 HOH HOH . D 4 HOH A 32 732 29 HOH HOH . D 4 HOH A 33 733 36 HOH HOH . D 4 HOH A 34 734 32 HOH HOH . D 4 HOH A 35 735 42 HOH HOH . D 4 HOH A 36 736 24 HOH HOH . D 4 HOH A 37 737 46 HOH HOH . D 4 HOH A 38 738 31 HOH HOH . D 4 HOH A 39 739 38 HOH HOH . D 4 HOH A 40 740 25 HOH HOH . D 4 HOH A 41 741 40 HOH HOH . D 4 HOH A 42 742 34 HOH HOH . D 4 HOH A 43 743 30 HOH HOH . D 4 HOH A 44 744 35 HOH HOH . D 4 HOH A 45 745 44 HOH HOH . D 4 HOH A 46 746 37 HOH HOH . D 4 HOH A 47 747 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . B . C 3 7.95 1.468 12.7 0.3 28.1 ? N1 FMN 602 A 1 HETATM 2 C C2 FMN . B . C 3 8.632 1.704 13.869 0.3 29.7 ? C2 FMN 602 A 1 HETATM 3 O O2 FMN . B . C 3 9.402 2.657 13.921 0.3 30.51 ? O2 FMN 602 A 1 HETATM 4 N N3 FMN . B . C 3 8.452 0.881 14.953 0.3 28.82 ? N3 FMN 602 A 1 HETATM 5 C C4 FMN . B . C 3 7.587 -0.187 14.872 0.3 29.06 ? C4 FMN 602 A 1 HETATM 6 O O4 FMN . B . C 3 7.409 -0.934 15.822 0.3 29.98 ? O4 FMN 602 A 1 HETATM 7 C C4A FMN . B . C 3 6.905 -0.425 13.699 0.3 28.69 ? C4A FMN 602 A 1 HETATM 8 N N5 FMN . B . C 3 6.059 -1.486 13.617 0.3 26.3 ? N5 FMN 602 A 1 HETATM 9 C C5A FMN . B . C 3 5.372 -1.718 12.457 0.3 28.01 ? C5A FMN 602 A 1 HETATM 10 C C6 FMN . B . C 3 4.5 -2.794 12.386 0.3 27.99 ? C6 FMN 602 A 1 HETATM 11 C C7 FMN . B . C 3 3.796 -3.055 11.218 0.3 28.38 ? C7 FMN 602 A 1 HETATM 12 C C7M FMN . B . C 3 2.863 -4.236 11.163 0.3 30.21 ? C7M FMN 602 A 1 HETATM 13 C C8 FMN . B . C 3 3.974 -2.219 10.119 0.3 28.84 ? C8 FMN 602 A 1 HETATM 14 C C8M FMN . B . C 3 3.245 -2.451 8.829 0.3 30.48 ? C8M FMN 602 A 1 HETATM 15 C C9 FMN . B . C 3 4.843 -1.147 10.201 0.3 28.19 ? C9 FMN 602 A 1 HETATM 16 C C9A FMN . B . C 3 5.545 -0.89 11.363 0.3 26.01 ? C9A FMN 602 A 1 HETATM 17 N N10 FMN . B . C 3 6.401 0.189 11.452 0.3 27.1 ? N10 FMN 602 A 1 HETATM 18 C C10 FMN . B . C 3 7.084 0.408 12.614 0.3 27.78 ? C10 FMN 602 A 1 HETATM 19 C C1' FMN . B . C 3 6.671 1.093 10.291 0.3 26.57 ? C1' FMN 602 A 1 HETATM 20 C C2' FMN . B . C 3 5.816 2.341 10.228 0.3 26.3 ? C2' FMN 602 A 1 HETATM 21 O O2' FMN . B . C 3 4.507 2.023 10.609 0.3 27 ? O2' FMN 602 A 1 HETATM 22 C C3' FMN . B . C 3 5.885 2.879 8.8 0.3 27.35 ? C3' FMN 602 A 1 HETATM 23 O O3' FMN . B . C 3 5.525 1.868 7.883 0.3 25.86 ? O3' FMN 602 A 1 HETATM 24 C C4' FMN . B . C 3 7.288 3.368 8.439 0.3 28.77 ? C4' FMN 602 A 1 HETATM 25 O O4' FMN . B . C 3 7.757 4.193 9.483 0.3 28.74 ? O4' FMN 602 A 1 HETATM 26 C C5' FMN . B . C 3 7.326 4.142 7.123 0.3 29.65 ? C5' FMN 602 A 1 HETATM 27 O O5' FMN . B . C 3 6.167 4.926 7.063 0.3 30.76 ? O5' FMN 602 A 1 HETATM 28 P P FMN . B . C 3 6.21 6.517 6.809 0.3 29.91 ? P FMN 602 A 1 HETATM 29 O O1P FMN . B . C 3 5.07 6.841 5.874 0.3 32.21 ? O1P FMN 602 A 1 HETATM 30 O O2P FMN . B . C 3 7.53 6.951 6.232 0.3 33.9 ? O2P FMN 602 A 1 HETATM 31 O O3P FMN . B . C 3 5.99 7.205 8.139 0.3 29.25 ? O3P FMN 602 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #