data_8A4M
#
_model_server_result.job_id            uDysphxTl7ofa86OgWMtpA 
_model_server_result.datetime_utc      '2024-11-19 14:29:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    8A4M 
#
_exptl.entry_id    8A4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.533 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A4M 
_cell.length_a            67.883 
_cell.length_b            78.429 
_cell.length_c            80.036 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 88 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc2 A ND1 HIS 90 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 A OD2 ASP 92 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc4 A NE2 HIS 127 A HIS 153 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc5 A NE2 HIS 153 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 A SG CYS 172 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc7 A NE2 HIS 214 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc8 A ND1 HIS 225 A HIS 251 1_555 D ZN ZN . A ZN 303 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc9 B ZN ZN . A ZN 301 1_555 G NAI L2R . A L2R 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc10 C ZN ZN . A ZN 302 1_555 G SAL L2R . A L2R 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc11 D ZN ZN . A ZN 303 1_555 E OXT ACT . A ACT 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? 
metalc ? metalc12 D ZN ZN . A ZN 303 1_555 F OXT ACT . A ACT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
#
_chem_comp.formula           'C21 H24 N8 O2 S' 
_chem_comp.formula_weight    452.533 
_chem_comp.id                L2R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAZ NAY L2R doub 179 n y 
CAZ NBB L2R sing 180 n y 
NAY CAX L2R sing 181 n y 
CBE NBC L2R doub 182 n y 
CBE NBF L2R sing 183 n y 
NBC CAV L2R sing 184 n y 
NBB CBA L2R sing 185 n y 
CAX CBA L2R doub 186 n y 
CAX CAW L2R sing 187 n n 
CAW N L2R sing 188 n n 
NBF CBD L2R sing 189 n y 
CAV CAU L2R sing 190 n n 
CAV CBD L2R doub 191 n y 
CAU N L2R sing 192 n n 
N CA L2R sing 193 n n 
O C L2R doub 194 n n 
C OXT L2R sing 195 n n 
C CA L2R sing 196 n n 
CA CB L2R sing 197 n n 
CB CAN L2R sing 198 n n 
CAN CAM L2R sing 199 n n 
SAL CAJ L2R doub 200 n n 
CAM NAK L2R sing 201 n n 
CAJ NAK L2R sing 202 n n 
CAJ NAI L2R sing 203 n n 
NAK CAG L2R sing 204 n n 
CAE CAD L2R doub 205 n y 
CAE CAF L2R sing 206 n y 
NAI NAH L2R sing 207 n n 
CAG CAF L2R sing 208 n n 
CAG NAH L2R doub 209 n n 
CAD CAC L2R sing 210 n y 
CAF CAB L2R doub 211 n y 
CAC CAA L2R doub 212 n y 
CAB CAA L2R sing 213 n y 
CAB H1 L2R sing 214 n n 
CAA H2 L2R sing 215 n n 
CAC H3 L2R sing 216 n n 
CAD H4 L2R sing 217 n n 
CAE H5 L2R sing 218 n n 
NAI H6 L2R sing 219 n n 
CAM H7 L2R sing 220 n n 
CAM H8 L2R sing 221 n n 
CAN H9 L2R sing 222 n n 
CAN H10 L2R sing 223 n n 
CB H11 L2R sing 224 n n 
CB H12 L2R sing 225 n n 
CA H13 L2R sing 226 n n 
OXT H14 L2R sing 227 n n 
CAW H16 L2R sing 228 n n 
CAW H17 L2R sing 229 n n 
CBA H18 L2R sing 230 n n 
NBB H19 L2R sing 231 n n 
CAZ H20 L2R sing 232 n n 
CAU H22 L2R sing 233 n n 
CAU H23 L2R sing 234 n n 
CBD H24 L2R sing 235 n n 
NBF H25 L2R sing 236 n n 
CBE H26 L2R sing 237 n n 
#
_atom_sites.entry_id                     8A4M 
_atom_sites.fract_transf_matrix[1][1]    0.014731 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012494 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 2 ZN A 1 303 303 ZN ZN . 
E 3 ACT A 1 304 304 ACT ACT . 
F 3 ACT A 1 305 401 ACT ACT . 
G 4 L2R A 1 306 402 L2R 61P . 
H 5 HOH A 1 401 61 HOH HOH . 
H 5 HOH A 2 402 56 HOH HOH . 
H 5 HOH A 3 403 27 HOH HOH . 
H 5 HOH A 4 404 2 HOH HOH . 
H 5 HOH A 5 405 81 HOH HOH . 
H 5 HOH A 6 406 40 HOH HOH . 
H 5 HOH A 7 407 22 HOH HOH . 
H 5 HOH A 8 408 9 HOH HOH . 
H 5 HOH A 9 409 70 HOH HOH . 
H 5 HOH A 10 410 63 HOH HOH . 
H 5 HOH A 11 411 19 HOH HOH . 
H 5 HOH A 12 412 37 HOH HOH . 
H 5 HOH A 13 413 17 HOH HOH . 
H 5 HOH A 14 414 64 HOH HOH . 
H 5 HOH A 15 415 28 HOH HOH . 
H 5 HOH A 16 416 87 HOH HOH . 
H 5 HOH A 17 417 47 HOH HOH . 
H 5 HOH A 18 418 97 HOH HOH . 
H 5 HOH A 19 419 48 HOH HOH . 
H 5 HOH A 20 420 3 HOH HOH . 
H 5 HOH A 21 421 30 HOH HOH . 
H 5 HOH A 22 422 83 HOH HOH . 
H 5 HOH A 23 423 46 HOH HOH . 
H 5 HOH A 24 424 13 HOH HOH . 
H 5 HOH A 25 425 11 HOH HOH . 
H 5 HOH A 26 426 91 HOH HOH . 
H 5 HOH A 27 427 6 HOH HOH . 
H 5 HOH A 28 428 25 HOH HOH . 
H 5 HOH A 29 429 44 HOH HOH . 
H 5 HOH A 30 430 15 HOH HOH . 
H 5 HOH A 31 431 18 HOH HOH . 
H 5 HOH A 32 432 86 HOH HOH . 
H 5 HOH A 33 433 41 HOH HOH . 
H 5 HOH A 34 434 39 HOH HOH . 
H 5 HOH A 35 435 78 HOH HOH . 
H 5 HOH A 36 436 33 HOH HOH . 
H 5 HOH A 37 437 7 HOH HOH . 
H 5 HOH A 38 438 1 HOH HOH . 
H 5 HOH A 39 439 10 HOH HOH . 
H 5 HOH A 40 440 36 HOH HOH . 
H 5 HOH A 41 441 5 HOH HOH . 
H 5 HOH A 42 442 38 HOH HOH . 
H 5 HOH A 43 443 45 HOH HOH . 
H 5 HOH A 44 444 4 HOH HOH . 
H 5 HOH A 45 445 35 HOH HOH . 
H 5 HOH A 46 446 32 HOH HOH . 
H 5 HOH A 47 447 16 HOH HOH . 
H 5 HOH A 48 448 24 HOH HOH . 
H 5 HOH A 49 449 8 HOH HOH . 
H 5 HOH A 50 450 12 HOH HOH . 
H 5 HOH A 51 451 82 HOH HOH . 
H 5 HOH A 52 452 26 HOH HOH . 
H 5 HOH A 53 453 52 HOH HOH . 
H 5 HOH A 54 454 89 HOH HOH . 
H 5 HOH A 55 455 51 HOH HOH . 
H 5 HOH A 56 456 95 HOH HOH . 
H 5 HOH A 57 457 74 HOH HOH . 
H 5 HOH A 58 458 49 HOH HOH . 
H 5 HOH A 59 459 88 HOH HOH . 
H 5 HOH A 60 460 14 HOH HOH . 
H 5 HOH A 61 461 21 HOH HOH . 
H 5 HOH A 62 462 79 HOH HOH . 
H 5 HOH A 63 463 72 HOH HOH . 
H 5 HOH A 64 464 57 HOH HOH . 
H 5 HOH A 65 465 62 HOH HOH . 
H 5 HOH A 66 466 65 HOH HOH . 
H 5 HOH A 67 467 68 HOH HOH . 
H 5 HOH A 68 468 20 HOH HOH . 
H 5 HOH A 69 469 42 HOH HOH . 
H 5 HOH A 70 470 23 HOH HOH . 
H 5 HOH A 71 471 55 HOH HOH . 
H 5 HOH A 72 472 73 HOH HOH . 
H 5 HOH A 73 473 34 HOH HOH . 
H 5 HOH A 74 474 59 HOH HOH . 
H 5 HOH A 75 475 43 HOH HOH . 
H 5 HOH A 76 476 31 HOH HOH . 
H 5 HOH A 77 477 71 HOH HOH . 
H 5 HOH A 78 478 67 HOH HOH . 
H 5 HOH A 79 479 93 HOH HOH . 
H 5 HOH A 80 480 58 HOH HOH . 
H 5 HOH A 81 481 80 HOH HOH . 
H 5 HOH A 82 482 77 HOH HOH . 
H 5 HOH A 83 483 29 HOH HOH . 
H 5 HOH A 84 484 66 HOH HOH . 
H 5 HOH A 85 485 69 HOH HOH . 
H 5 HOH A 86 486 53 HOH HOH . 
H 5 HOH A 87 487 50 HOH HOH . 
H 5 HOH A 88 488 92 HOH HOH . 
H 5 HOH A 89 489 84 HOH HOH . 
H 5 HOH A 90 490 90 HOH HOH . 
H 5 HOH A 91 491 94 HOH HOH . 
H 5 HOH A 92 492 60 HOH HOH . 
H 5 HOH A 93 493 85 HOH HOH . 
H 5 HOH A 94 494 76 HOH HOH . 
H 5 HOH A 95 495 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB L2R . A . G 4 30.265 17.503 11.989 0.8 46.23 ? CAB L2R 306 A 1 
HETATM 2 C CAA L2R . A . G 4 31.475 17.979 12.516 0.8 50.26 ? CAA L2R 306 A 1 
HETATM 3 C CAC L2R . A . G 4 32.588 18.132 11.675 0.8 52.06 ? CAC L2R 306 A 1 
HETATM 4 C CAD L2R . A . G 4 32.502 17.828 10.307 0.8 52.29 ? CAD L2R 306 A 1 
HETATM 5 C CAE L2R . A . G 4 31.286 17.355 9.793 0.8 48.26 ? CAE L2R 306 A 1 
HETATM 6 C CAF L2R . A . G 4 30.163 17.198 10.621 0.8 46.16 ? CAF L2R 306 A 1 
HETATM 7 C CAG L2R . A . G 4 28.986 16.755 10.131 0.8 42.54 ? CAG L2R 306 A 1 
HETATM 8 N NAH L2R . A . G 4 28.26 15.823 10.751 0.8 34.98 ? NAH L2R 306 A 1 
HETATM 9 N NAI L2R . A . G 4 27.138 15.635 10.017 0.8 40.58 ? NAI L2R 306 A 1 
HETATM 10 C CAJ L2R . A . G 4 27.216 16.437 8.961 0.8 42.83 ? CAJ L2R 306 A 1 
HETATM 11 S SAL L2R . A . G 4 25.987 16.493 7.7 0.8 45.41 ? SAL L2R 306 A 1 
HETATM 12 N NAK L2R . A . G 4 28.338 17.172 9.017 0.8 44.03 ? NAK L2R 306 A 1 
HETATM 13 C CAM L2R . A . G 4 28.664 18.142 7.94 0.8 43.73 ? CAM L2R 306 A 1 
HETATM 14 C CAN L2R . A . G 4 29.658 17.461 7.005 0.8 43.93 ? CAN L2R 306 A 1 
HETATM 15 C CB L2R . A . G 4 29.418 17.921 5.569 0.8 49.82 ? CB L2R 306 A 1 
HETATM 16 C CA L2R . A . G 4 30.24 17.032 4.594 0.8 52.61 ? CA L2R 306 A 1 
HETATM 17 C C L2R . A . G 4 29.591 15.61 4.362 0.8 55.05 ? C L2R 306 A 1 
HETATM 18 O OXT L2R . A . G 4 30.358 14.645 4.393 0.8 58.51 ? OXT L2R 306 A 1 
HETATM 19 O O L2R . A . G 4 28.35 15.488 4.202 0.8 58.68 ? O L2R 306 A 1 
HETATM 20 N N L2R . A . G 4 30.54 17.781 3.335 0.8 58.09 ? N L2R 306 A 1 
HETATM 21 C CAW L2R . A . G 4 29.513 17.663 2.26 0.8 55.77 ? CAW L2R 306 A 1 
HETATM 22 C CAX L2R . A . G 4 28.921 19.034 1.852 0.8 58.2 ? CAX L2R 306 A 1 
HETATM 23 C CBA L2R . A . G 4 27.687 19.496 2.149 0.8 56.46 ? CBA L2R 306 A 1 
HETATM 24 N NBB L2R . A . G 4 27.577 20.714 1.615 0.8 45.96 ? NBB L2R 306 A 1 
HETATM 25 C CAZ L2R . A . G 4 28.724 20.991 1.005 0.8 49.88 ? CAZ L2R 306 A 1 
HETATM 26 N NAY L2R . A . G 4 29.564 19.952 1.138 0.8 56.61 ? NAY L2R 306 A 1 
HETATM 27 C CAU L2R . A . G 4 31.932 17.585 2.864 0.8 61.06 ? CAU L2R 306 A 1 
HETATM 28 C CAV L2R . A . G 4 32.173 16.108 2.462 0.8 58.96 ? CAV L2R 306 A 1 
HETATM 29 C CBD L2R . A . G 4 32.973 15.249 3.082 0.8 66.18 ? CBD L2R 306 A 1 
HETATM 30 N NBF L2R . A . G 4 32.869 14.085 2.425 0.8 68.51 ? NBF L2R 306 A 1 
HETATM 31 C CBE L2R . A . G 4 32.017 14.249 1.412 0.8 57.18 ? CBE L2R 306 A 1 
HETATM 32 N NBC L2R . A . G 4 31.575 15.503 1.459 0.8 50.24 ? NBC L2R 306 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#