data_8A4T # _model_server_result.job_id AznLHEOrIGXENrDlk_hK7A _model_server_result.datetime_utc '2024-11-14 13:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8A4T # _exptl.entry_id 8A4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 595.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8A4T _cell.length_a 170.002 _cell.length_b 170.002 _cell.length_c 54.107 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C57 O6K . A O6K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 E C57 O6K . B O6K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? # _chem_comp.formula 'C31 H41 N5 O7' _chem_comp.formula_weight 595.687 _chem_comp.id O6K _chem_comp.mon_nstd_flag . _chem_comp.name '~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S,S,S)-13b;13b-K;ketoamide inhibitor 13b (bound)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N49 C47 O6K sing 237 n n N49 C51 O6K sing 238 n n O48 C47 O6K doub 239 n n C47 C45 O6K sing 240 n n C51 C54 O6K sing 241 n n O41 C35 O6K doub 242 n n C54 C45 O6K sing 243 n n C45 C42 O6K sing 244 n n C42 C40 O6K sing 245 n n C23 C15 O6K doub 246 n y C23 C25 O6K sing 247 n y C15 C14 O6K sing 248 n y C25 C26 O6K doub 249 n y C35 N36 O6K sing 250 n n C35 C57 O6K sing 251 n n C14 C13 O6K sing 252 n n C14 C28 O6K doub 253 n y C13 N36 O6K sing 254 n n C26 C28 O6K sing 255 n y C40 C57 O6K sing 256 n n C40 N38 O6K sing 257 n n C57 O40 O6K sing 258 n n C32 C27 O6K sing 259 n n N38 C36 O6K sing 260 n n C33 C27 O6K sing 261 n n C27 O25 O6K sing 262 n n C27 C31 O6K sing 263 n n O25 C24 O6K sing 264 n n O37 C36 O6K doub 265 n n O22 C21 O6K doub 266 n n C36 C20 O6K sing 267 n n N23 C24 O6K sing 268 n n N23 C19 O6K sing 269 n n C24 O26 O6K doub 270 n n C21 C19 O6K sing 271 n n C21 N15 O6K sing 272 n n C20 N15 O6K sing 273 n n C20 C22 O6K sing 274 n n C19 C18 O6K doub 275 n n N15 C16 O6K sing 276 n n C22 C29 O6K sing 277 n n C18 C17 O6K sing 278 n n C16 C17 O6K doub 279 n n C30 C29 O6K sing 280 n n C30 C34 O6K sing 281 n n C29 C34 O6K sing 282 n n C31 H1 O6K sing 283 n n C31 H2 O6K sing 284 n n C31 H3 O6K sing 285 n n C32 H4 O6K sing 286 n n C32 H5 O6K sing 287 n n C32 H6 O6K sing 288 n n C33 H7 O6K sing 289 n n C33 H8 O6K sing 290 n n C33 H9 O6K sing 291 n n N23 H10 O6K sing 292 n n C18 H11 O6K sing 293 n n C17 H12 O6K sing 294 n n C16 H13 O6K sing 295 n n C20 H14 O6K sing 296 n n C22 H15 O6K sing 297 n n C22 H16 O6K sing 298 n n C29 H17 O6K sing 299 n n C34 H18 O6K sing 300 n n C34 H19 O6K sing 301 n n C30 H20 O6K sing 302 n n C30 H21 O6K sing 303 n n N38 H22 O6K sing 304 n n C40 H23 O6K sing 305 n n C42 H24 O6K sing 306 n n C42 H25 O6K sing 307 n n C45 H26 O6K sing 308 n n N49 H27 O6K sing 309 n n C51 H28 O6K sing 310 n n C51 H29 O6K sing 311 n n C54 H30 O6K sing 312 n n C54 H31 O6K sing 313 n n N36 H34 O6K sing 314 n n C13 H35 O6K sing 315 n n C13 H36 O6K sing 316 n n C28 H37 O6K sing 317 n n C26 H38 O6K sing 318 n n C25 H39 O6K sing 319 n n C23 H40 O6K sing 320 n n C15 H41 O6K sing 321 n n C57 H32 O6K sing 322 n n O40 H33 O6K sing 323 n n # _atom_sites.entry_id 8A4T _atom_sites.fract_transf_matrix[1][1] 0.005882 _atom_sites.fract_transf_matrix[1][2] 0.003396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O6K A 1 401 401 O6K 13b . D 3 CL A 1 402 1 CL CL . E 2 O6K B 1 401 401 O6K 13b . F 4 HOH A 1 501 26 HOH HOH . F 4 HOH A 2 502 21 HOH HOH . F 4 HOH A 3 503 22 HOH HOH . F 4 HOH A 4 504 31 HOH HOH . F 4 HOH A 5 505 27 HOH HOH . F 4 HOH A 6 506 23 HOH HOH . F 4 HOH A 7 507 25 HOH HOH . F 4 HOH A 8 508 29 HOH HOH . F 4 HOH A 9 509 28 HOH HOH . F 4 HOH A 10 510 24 HOH HOH . F 4 HOH A 11 511 3 HOH HOH . F 4 HOH A 12 512 19 HOH HOH . F 4 HOH A 13 513 20 HOH HOH . F 4 HOH A 14 514 52 HOH HOH . F 4 HOH A 15 515 8 HOH HOH . F 4 HOH A 16 516 1 HOH HOH . F 4 HOH A 17 517 42 HOH HOH . F 4 HOH A 18 518 45 HOH HOH . F 4 HOH A 19 519 47 HOH HOH . F 4 HOH A 20 520 2 HOH HOH . F 4 HOH A 21 521 7 HOH HOH . F 4 HOH A 22 522 51 HOH HOH . F 4 HOH A 23 523 46 HOH HOH . F 4 HOH A 24 524 48 HOH HOH . F 4 HOH A 25 525 9 HOH HOH . G 4 HOH B 1 501 38 HOH HOH . G 4 HOH B 2 502 43 HOH HOH . G 4 HOH B 3 503 41 HOH HOH . G 4 HOH B 4 504 40 HOH HOH . G 4 HOH B 5 505 34 HOH HOH . G 4 HOH B 6 506 33 HOH HOH . G 4 HOH B 7 507 32 HOH HOH . G 4 HOH B 8 508 44 HOH HOH . G 4 HOH B 9 509 10 HOH HOH . G 4 HOH B 10 510 15 HOH HOH . G 4 HOH B 11 511 11 HOH HOH . G 4 HOH B 12 512 50 HOH HOH . G 4 HOH B 13 513 49 HOH HOH . G 4 HOH B 14 514 39 HOH HOH . G 4 HOH B 15 515 12 HOH HOH . G 4 HOH B 16 516 5 HOH HOH . G 4 HOH B 17 517 14 HOH HOH . G 4 HOH B 18 518 37 HOH HOH . G 4 HOH B 19 519 13 HOH HOH . G 4 HOH B 20 520 35 HOH HOH . G 4 HOH B 21 521 4 HOH HOH . G 4 HOH B 22 522 16 HOH HOH . G 4 HOH B 23 523 18 HOH HOH . G 4 HOH B 24 524 6 HOH HOH . G 4 HOH B 25 525 30 HOH HOH . G 4 HOH B 26 526 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O26 O6K . . . C 2 -22.467 24.46 -0.8 1 91.34 ? O26 O6K 401 A 1 HETATM 2 C C24 O6K . . . C 2 -21.35 24.816 -0.46 1 80.98 ? C24 O6K 401 A 1 HETATM 3 O O25 O6K . . . C 2 -20.557 23.945 0.425 1 84.36 ? O25 O6K 401 A 1 HETATM 4 C C27 O6K . . . C 2 -21.071 23.398 1.673 1 78.67 ? C27 O6K 401 A 1 HETATM 5 C C31 O6K . . . C 2 -20.026 23.494 2.777 1 74 ? C31 O6K 401 A 1 HETATM 6 C C32 O6K . . . C 2 -21.367 21.92 1.396 1 78.75 ? C32 O6K 401 A 1 HETATM 7 C C33 O6K . . . C 2 -22.308 24.154 2.185 1 76.62 ? C33 O6K 401 A 1 HETATM 8 N N23 O6K . . . C 2 -20.835 25.991 -0.811 1 68.75 ? N23 O6K 401 A 1 HETATM 9 C C19 O6K . . . C 2 -21.533 27.014 -1.397 1 60.4 ? C19 O6K 401 A 1 HETATM 10 C C21 O6K . . . C 2 -20.834 28.316 -1.523 1 53.24 ? C21 O6K 401 A 1 HETATM 11 O O22 O6K . . . C 2 -19.651 28.348 -1.08 1 55.55 ? O22 O6K 401 A 1 HETATM 12 C C18 O6K . . . C 2 -22.843 26.978 -1.89 1 54.22 ? C18 O6K 401 A 1 HETATM 13 C C17 O6K . . . C 2 -23.411 28.121 -2.445 1 49.29 ? C17 O6K 401 A 1 HETATM 14 C C16 O6K . . . C 2 -22.738 29.352 -2.528 1 46.88 ? C16 O6K 401 A 1 HETATM 15 N N15 O6K . . . C 2 -21.479 29.46 -2.111 1 46.82 ? N15 O6K 401 A 1 HETATM 16 C C20 O6K . . . C 2 -20.72 30.733 -2.197 1 46.13 ? C20 O6K 401 A 1 HETATM 17 C C22 O6K . . . C 2 -21.034 31.721 -3.346 1 41.56 ? C22 O6K 401 A 1 HETATM 18 C C29 O6K . . . C 2 -20.962 31.125 -4.778 1 37.19 ? C29 O6K 401 A 1 HETATM 19 C C34 O6K . . . C 2 -19.579 30.992 -5.419 1 35.18 ? C34 O6K 401 A 1 HETATM 20 C C30 O6K . . . C 2 -20.522 32.016 -5.941 1 36.73 ? C30 O6K 401 A 1 HETATM 21 C C36 O6K . . . C 2 -20.891 31.401 -0.851 1 47.06 ? C36 O6K 401 A 1 HETATM 22 O O37 O6K . . . C 2 -21.907 31.321 -0.209 1 52.36 ? O37 O6K 401 A 1 HETATM 23 N N38 O6K . . . C 2 -19.876 32.072 -0.374 1 44.62 ? N38 O6K 401 A 1 HETATM 24 C C40 O6K . . . C 2 -19.992 32.803 0.848 1 48.53 ? C40 O6K 401 A 1 HETATM 25 C C42 O6K . . . C 2 -18.933 32.383 1.892 1 44.01 ? C42 O6K 401 A 1 HETATM 26 C C45 O6K . . . C 2 -19.111 30.939 2.317 1 44.42 ? C45 O6K 401 A 1 HETATM 27 C C47 O6K . . . C 2 -17.938 30.548 3.148 1 48.02 ? C47 O6K 401 A 1 HETATM 28 O O48 O6K . . . C 2 -16.778 30.594 2.704 1 39.35 ? O48 O6K 401 A 1 HETATM 29 N N49 O6K . . . C 2 -18.395 30.132 4.363 1 50.39 ? N49 O6K 401 A 1 HETATM 30 C C51 O6K . . . C 2 -19.839 30.168 4.537 1 41.36 ? C51 O6K 401 A 1 HETATM 31 C C54 O6K . . . C 2 -20.334 30.645 3.18 1 43.44 ? C54 O6K 401 A 1 HETATM 32 C C57 O6K . . . C 2 -19.881 34.253 0.373 1 51.28 ? C57 O6K 401 A 1 HETATM 33 O O40 O6K . . . C 2 -20.612 34.425 -0.863 1 53.28 ? O40 O6K 401 A 1 HETATM 34 C C35 O6K . . . C 2 -20.457 35.188 1.375 1 48.26 ? C35 O6K 401 A 1 HETATM 35 O O41 O6K . . . C 2 -19.951 35.413 2.466 1 38.98 ? O41 O6K 401 A 1 HETATM 36 N N36 O6K . . . C 2 -21.601 35.685 0.936 1 53.86 ? N36 O6K 401 A 1 HETATM 37 C C13 O6K . . . C 2 -22.404 36.539 1.764 1 59.2 ? C13 O6K 401 A 1 HETATM 38 C C14 O6K . . . C 2 -23.502 35.821 2.511 1 58.87 ? C14 O6K 401 A 1 HETATM 39 C C28 O6K . . . C 2 -24.388 36.6 3.23 1 60.52 ? C28 O6K 401 A 1 HETATM 40 C C26 O6K . . . C 2 -25.45 36.045 3.897 1 64.24 ? C26 O6K 401 A 1 HETATM 41 C C25 O6K . . . C 2 -25.609 34.686 3.832 1 67.52 ? C25 O6K 401 A 1 HETATM 42 C C23 O6K . . . C 2 -24.712 33.903 3.116 1 67.73 ? C23 O6K 401 A 1 HETATM 43 C C15 O6K . . . C 2 -23.648 34.456 2.459 1 64.64 ? C15 O6K 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #