data_8A4Y # _model_server_result.job_id J2ap-ow81FinJM8kEoKfsw _model_server_result.datetime_utc '2024-11-21 08:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8A4Y # _exptl.entry_id 8A4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,3-dihydro-1H-inden-5-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A4Y _cell.length_a 36.688 _cell.length_b 36.688 _cell.length_c 140.928 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N O' _chem_comp.formula_weight 175.227 _chem_comp.id QO6 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2,3-dihydro-1H-inden-5-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}-(2,3-dihydro-1~{H}-inden-5-yl)ethanamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 QO6 sing 277 n n C11 O13 QO6 doub 278 n n C11 N10 QO6 sing 279 n n N10 C7 QO6 sing 280 n n C7 C9 QO6 doub 281 n y C7 C3 QO6 sing 282 n y C9 C5 QO6 sing 283 n y C3 C1 QO6 doub 284 n y C5 C2 QO6 doub 285 n y C1 C2 QO6 sing 286 n y C1 C4 QO6 sing 287 n n C2 C6 QO6 sing 288 n n C4 C8 QO6 sing 289 n n C6 C8 QO6 sing 290 n n C12 H2 QO6 sing 291 n n C12 H3 QO6 sing 292 n n C12 H1 QO6 sing 293 n n N10 H4 QO6 sing 294 n n C3 H5 QO6 sing 295 n n C9 H7 QO6 sing 296 n n C5 H8 QO6 sing 297 n n C6 H10 QO6 sing 298 n n C6 H102 QO6 sing 299 n n C8 H11 QO6 sing 300 n n C8 H092 QO6 sing 301 n n C4 H12 QO6 sing 302 n n C4 H13 QO6 sing 303 n n # _atom_sites.entry_id 8A4Y _atom_sites.fract_transf_matrix[1][1] 0.027257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QO6 A 1 201 201 QO6 LIG . C 3 HOH A 1 301 165 HOH HOH . C 3 HOH A 2 302 149 HOH HOH . C 3 HOH A 3 303 67 HOH HOH . C 3 HOH A 4 304 121 HOH HOH . C 3 HOH A 5 305 141 HOH HOH . C 3 HOH A 6 306 127 HOH HOH . C 3 HOH A 7 307 139 HOH HOH . C 3 HOH A 8 308 60 HOH HOH . C 3 HOH A 9 309 23 HOH HOH . C 3 HOH A 10 310 3 HOH HOH . C 3 HOH A 11 311 39 HOH HOH . C 3 HOH A 12 312 126 HOH HOH . C 3 HOH A 13 313 130 HOH HOH . C 3 HOH A 14 314 122 HOH HOH . C 3 HOH A 15 315 48 HOH HOH . C 3 HOH A 16 316 27 HOH HOH . C 3 HOH A 17 317 105 HOH HOH . C 3 HOH A 18 318 140 HOH HOH . C 3 HOH A 19 319 34 HOH HOH . C 3 HOH A 20 320 5 HOH HOH . C 3 HOH A 21 321 82 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 64 HOH HOH . C 3 HOH A 24 324 38 HOH HOH . C 3 HOH A 25 325 55 HOH HOH . C 3 HOH A 26 326 72 HOH HOH . C 3 HOH A 27 327 116 HOH HOH . C 3 HOH A 28 328 73 HOH HOH . C 3 HOH A 29 329 129 HOH HOH . C 3 HOH A 30 330 143 HOH HOH . C 3 HOH A 31 331 41 HOH HOH . C 3 HOH A 32 332 1 HOH HOH . C 3 HOH A 33 333 109 HOH HOH . C 3 HOH A 34 334 54 HOH HOH . C 3 HOH A 35 335 45 HOH HOH . C 3 HOH A 36 336 22 HOH HOH . C 3 HOH A 37 337 6 HOH HOH . C 3 HOH A 38 338 8 HOH HOH . C 3 HOH A 39 339 7 HOH HOH . C 3 HOH A 40 340 28 HOH HOH . C 3 HOH A 41 341 46 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 2 HOH HOH . C 3 HOH A 44 344 78 HOH HOH . C 3 HOH A 45 345 119 HOH HOH . C 3 HOH A 46 346 84 HOH HOH . C 3 HOH A 47 347 157 HOH HOH . C 3 HOH A 48 348 20 HOH HOH . C 3 HOH A 49 349 37 HOH HOH . C 3 HOH A 50 350 15 HOH HOH . C 3 HOH A 51 351 31 HOH HOH . C 3 HOH A 52 352 26 HOH HOH . C 3 HOH A 53 353 10 HOH HOH . C 3 HOH A 54 354 16 HOH HOH . C 3 HOH A 55 355 4 HOH HOH . C 3 HOH A 56 356 32 HOH HOH . C 3 HOH A 57 357 21 HOH HOH . C 3 HOH A 58 358 17 HOH HOH . C 3 HOH A 59 359 19 HOH HOH . C 3 HOH A 60 360 153 HOH HOH . C 3 HOH A 61 361 30 HOH HOH . C 3 HOH A 62 362 40 HOH HOH . C 3 HOH A 63 363 43 HOH HOH . C 3 HOH A 64 364 89 HOH HOH . C 3 HOH A 65 365 18 HOH HOH . C 3 HOH A 66 366 25 HOH HOH . C 3 HOH A 67 367 62 HOH HOH . C 3 HOH A 68 368 108 HOH HOH . C 3 HOH A 69 369 33 HOH HOH . C 3 HOH A 70 370 12 HOH HOH . C 3 HOH A 71 371 11 HOH HOH . C 3 HOH A 72 372 120 HOH HOH . C 3 HOH A 73 373 52 HOH HOH . C 3 HOH A 74 374 58 HOH HOH . C 3 HOH A 75 375 9 HOH HOH . C 3 HOH A 76 376 29 HOH HOH . C 3 HOH A 77 377 102 HOH HOH . C 3 HOH A 78 378 92 HOH HOH . C 3 HOH A 79 379 111 HOH HOH . C 3 HOH A 80 380 113 HOH HOH . C 3 HOH A 81 381 49 HOH HOH . C 3 HOH A 82 382 137 HOH HOH . C 3 HOH A 83 383 146 HOH HOH . C 3 HOH A 84 384 166 HOH HOH . C 3 HOH A 85 385 36 HOH HOH . C 3 HOH A 86 386 77 HOH HOH . C 3 HOH A 87 387 125 HOH HOH . C 3 HOH A 88 388 114 HOH HOH . C 3 HOH A 89 389 94 HOH HOH . C 3 HOH A 90 390 93 HOH HOH . C 3 HOH A 91 391 115 HOH HOH . C 3 HOH A 92 392 106 HOH HOH . C 3 HOH A 93 393 164 HOH HOH . C 3 HOH A 94 394 51 HOH HOH . C 3 HOH A 95 395 66 HOH HOH . C 3 HOH A 96 396 103 HOH HOH . C 3 HOH A 97 397 24 HOH HOH . C 3 HOH A 98 398 167 HOH HOH . C 3 HOH A 99 399 124 HOH HOH . C 3 HOH A 100 400 50 HOH HOH . C 3 HOH A 101 401 75 HOH HOH . C 3 HOH A 102 402 112 HOH HOH . C 3 HOH A 103 403 128 HOH HOH . C 3 HOH A 104 404 56 HOH HOH . C 3 HOH A 105 405 145 HOH HOH . C 3 HOH A 106 406 80 HOH HOH . C 3 HOH A 107 407 104 HOH HOH . C 3 HOH A 108 408 65 HOH HOH . C 3 HOH A 109 409 123 HOH HOH . C 3 HOH A 110 410 136 HOH HOH . C 3 HOH A 111 411 156 HOH HOH . C 3 HOH A 112 412 117 HOH HOH . C 3 HOH A 113 413 47 HOH HOH . C 3 HOH A 114 414 59 HOH HOH . C 3 HOH A 115 415 68 HOH HOH . C 3 HOH A 116 416 71 HOH HOH . C 3 HOH A 117 417 79 HOH HOH . C 3 HOH A 118 418 142 HOH HOH . C 3 HOH A 119 419 155 HOH HOH . C 3 HOH A 120 420 53 HOH HOH . C 3 HOH A 121 421 138 HOH HOH . C 3 HOH A 122 422 134 HOH HOH . C 3 HOH A 123 423 154 HOH HOH . C 3 HOH A 124 424 158 HOH HOH . C 3 HOH A 125 425 132 HOH HOH . C 3 HOH A 126 426 63 HOH HOH . C 3 HOH A 127 427 148 HOH HOH . C 3 HOH A 128 428 159 HOH HOH . C 3 HOH A 129 429 161 HOH HOH . C 3 HOH A 130 430 151 HOH HOH . C 3 HOH A 131 431 107 HOH HOH . C 3 HOH A 132 432 163 HOH HOH . C 3 HOH A 133 433 160 HOH HOH . C 3 HOH A 134 434 147 HOH HOH . C 3 HOH A 135 435 133 HOH HOH . C 3 HOH A 136 436 87 HOH HOH . C 3 HOH A 137 437 162 HOH HOH . C 3 HOH A 138 438 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 QO6 . . . B 2 16.963 -12.364 -0.012 1 54.71 ? O13 QO6 201 A 1 HETATM 2 C C11 QO6 . . . B 2 17.504 -13.416 -0.044 1 53.15 ? C11 QO6 201 A 1 HETATM 3 C C12 QO6 . . . B 2 18.31 -13.81 -1.28 1 53.51 ? C12 QO6 201 A 1 HETATM 4 N N10 QO6 . . . B 2 17.4 -14.329 1.078 1 49.72 ? N10 QO6 201 A 1 HETATM 5 C C7 QO6 . . . B 2 16.631 -13.994 2.261 1 46.65 ? C7 QO6 201 A 1 HETATM 6 C C3 QO6 . . . B 2 17.15 -13.166 3.253 1 45.85 ? C3 QO6 201 A 1 HETATM 7 C C9 QO6 . . . B 2 15.35 -14.542 2.402 1 44.53 ? C9 QO6 201 A 1 HETATM 8 C C5 QO6 . . . B 2 14.577 -14.255 3.523 1 43.86 ? C5 QO6 201 A 1 HETATM 9 C C2 QO6 . . . B 2 15.092 -13.419 4.525 1 43.51 ? C2 QO6 201 A 1 HETATM 10 C C6 QO6 . . . B 2 14.459 -12.951 5.858 1 42.43 ? C6 QO6 201 A 1 HETATM 11 C C8 QO6 . . . B 2 15.347 -11.812 6.335 1 44.01 ? C8 QO6 201 A 1 HETATM 12 C C4 QO6 . . . B 2 16.678 -12.011 5.63 1 44.18 ? C4 QO6 201 A 1 HETATM 13 C C1 QO6 . . . B 2 16.368 -12.88 4.392 1 44.13 ? C1 QO6 201 A 1 HETATM 14 H H2 QO6 . . . B 2 18.236 -13.024 -2.026 1 64.22 ? H2 QO6 201 A 1 HETATM 15 H H3 QO6 . . . B 2 17.915 -14.735 -1.69 1 64.22 ? H3 QO6 201 A 1 HETATM 16 H H1 QO6 . . . B 2 19.351 -13.951 -1.004 1 64.22 ? H1 QO6 201 A 1 HETATM 17 H H4 QO6 . . . B 2 17.859 -15.217 1.03 1 59.67 ? H4 QO6 201 A 1 HETATM 18 H H5 QO6 . . . B 2 18.144 -12.748 3.152 1 55.03 ? H5 QO6 201 A 1 HETATM 19 H H7 QO6 . . . B 2 14.953 -15.185 1.626 1 53.44 ? H7 QO6 201 A 1 HETATM 20 H H8 QO6 . . . B 2 13.585 -14.678 3.624 1 52.64 ? H8 QO6 201 A 1 HETATM 21 H H10 QO6 . . . B 2 14.487 -13.762 6.579 1 50.93 ? H10 QO6 201 A 1 HETATM 22 H H102 QO6 . . . B 2 13.457 -12.58 5.674 1 50.93 ? H102 QO6 201 A 1 HETATM 23 H H11 QO6 . . . B 2 14.914 -10.864 6.033 1 52.82 ? H11 QO6 201 A 1 HETATM 24 H H092 QO6 . . . B 2 15.49 -11.889 7.408 1 52.82 ? H092 QO6 201 A 1 HETATM 25 H H12 QO6 . . . B 2 17.084 -11.054 5.322 1 53.02 ? H12 QO6 201 A 1 HETATM 26 H H13 QO6 . . . B 2 17.373 -12.527 6.284 1 53.02 ? H13 QO6 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 26 #