data_8A56
#
_model_server_result.job_id            F_yEzP3HqFhOW77VcfK49A 
_model_server_result.datetime_utc      '2024-11-17 05:38:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8A56 
#
_exptl.entry_id    8A56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A56 
_cell.length_a            139.797 
_cell.length_b            194.809 
_cell.length_c            91.46 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 229 n n 
C1 C2 GOL sing 230 n n 
C1 H11 GOL sing 231 n n 
C1 H12 GOL sing 232 n n 
O1 HO1 GOL sing 233 n n 
C2 O2 GOL sing 234 n n 
C2 C3 GOL sing 235 n n 
C2 H2 GOL sing 236 n n 
O2 HO2 GOL sing 237 n n 
C3 O3 GOL sing 238 n n 
C3 H31 GOL sing 239 n n 
C3 H32 GOL sing 240 n n 
O3 HO3 GOL sing 241 n n 
#
_atom_sites.entry_id                     8A56 
_atom_sites.fract_transf_matrix[1][1]    0.007153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005133 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 1000 FAD FAD . 
D 3 GOL A 1 602 3000 GOL GOL . 
E 4 IOD A 1 603 4000 IOD IOD . 
F 4 IOD A 1 604 4001 IOD IOD . 
G 5 EDO A 1 605 5001 EDO EDO . 
H 4 IOD A 1 606 5002 IOD IOD . 
I 6 PAP A 1 607 2000 PAP PAP . 
J 6 PAP B 1 601 2000 PAP PAP . 
K 2 FAD B 1 602 1000 FAD FAD . 
L 3 GOL B 1 603 3000 GOL GOL . 
M 4 IOD B 1 604 4000 IOD IOD . 
N 4 IOD B 1 605 4001 IOD IOD . 
O 5 EDO B 1 606 5000 EDO EDO . 
P 4 IOD B 1 607 5001 IOD IOD . 
Q 7 HOH A 1 701 139 HOH HOH . 
Q 7 HOH A 2 702 206 HOH HOH . 
Q 7 HOH A 3 703 60 HOH HOH . 
Q 7 HOH A 4 704 66 HOH HOH . 
Q 7 HOH A 5 705 140 HOH HOH . 
Q 7 HOH A 6 706 245 HOH HOH . 
Q 7 HOH A 7 707 82 HOH HOH . 
Q 7 HOH A 8 708 203 HOH HOH . 
Q 7 HOH A 9 709 93 HOH HOH . 
Q 7 HOH A 10 710 63 HOH HOH . 
Q 7 HOH A 11 711 229 HOH HOH . 
Q 7 HOH A 12 712 134 HOH HOH . 
Q 7 HOH A 13 713 222 HOH HOH . 
Q 7 HOH A 14 714 142 HOH HOH . 
Q 7 HOH A 15 715 221 HOH HOH . 
Q 7 HOH A 16 716 181 HOH HOH . 
Q 7 HOH A 17 717 183 HOH HOH . 
Q 7 HOH A 18 718 9 HOH HOH . 
Q 7 HOH A 19 719 27 HOH HOH . 
Q 7 HOH A 20 720 47 HOH HOH . 
Q 7 HOH A 21 721 49 HOH HOH . 
Q 7 HOH A 22 722 234 HOH HOH . 
Q 7 HOH A 23 723 68 HOH HOH . 
Q 7 HOH A 24 724 92 HOH HOH . 
Q 7 HOH A 25 725 58 HOH HOH . 
Q 7 HOH A 26 726 14 HOH HOH . 
Q 7 HOH A 27 727 72 HOH HOH . 
Q 7 HOH A 28 728 153 HOH HOH . 
Q 7 HOH A 29 729 177 HOH HOH . 
Q 7 HOH A 30 730 31 HOH HOH . 
Q 7 HOH A 31 731 28 HOH HOH . 
Q 7 HOH A 32 732 36 HOH HOH . 
Q 7 HOH A 33 733 154 HOH HOH . 
Q 7 HOH A 34 734 24 HOH HOH . 
Q 7 HOH A 35 735 70 HOH HOH . 
Q 7 HOH A 36 736 10 HOH HOH . 
Q 7 HOH A 37 737 15 HOH HOH . 
Q 7 HOH A 38 738 67 HOH HOH . 
Q 7 HOH A 39 739 5 HOH HOH . 
Q 7 HOH A 40 740 78 HOH HOH . 
Q 7 HOH A 41 741 131 HOH HOH . 
Q 7 HOH A 42 742 115 HOH HOH . 
Q 7 HOH A 43 743 20 HOH HOH . 
Q 7 HOH A 44 744 124 HOH HOH . 
Q 7 HOH A 45 745 157 HOH HOH . 
Q 7 HOH A 46 746 2 HOH HOH . 
Q 7 HOH A 47 747 34 HOH HOH . 
Q 7 HOH A 48 748 13 HOH HOH . 
Q 7 HOH A 49 749 11 HOH HOH . 
Q 7 HOH A 50 750 110 HOH HOH . 
Q 7 HOH A 51 751 147 HOH HOH . 
Q 7 HOH A 52 752 91 HOH HOH . 
Q 7 HOH A 53 753 213 HOH HOH . 
Q 7 HOH A 54 754 149 HOH HOH . 
Q 7 HOH A 55 755 247 HOH HOH . 
Q 7 HOH A 56 756 57 HOH HOH . 
Q 7 HOH A 57 757 75 HOH HOH . 
Q 7 HOH A 58 758 87 HOH HOH . 
Q 7 HOH A 59 759 148 HOH HOH . 
Q 7 HOH A 60 760 128 HOH HOH . 
Q 7 HOH A 61 761 12 HOH HOH . 
Q 7 HOH A 62 762 230 HOH HOH . 
Q 7 HOH A 63 763 138 HOH HOH . 
Q 7 HOH A 64 764 83 HOH HOH . 
Q 7 HOH A 65 765 159 HOH HOH . 
Q 7 HOH A 66 766 170 HOH HOH . 
Q 7 HOH A 67 767 129 HOH HOH . 
Q 7 HOH A 68 768 74 HOH HOH . 
Q 7 HOH A 69 769 55 HOH HOH . 
Q 7 HOH A 70 770 119 HOH HOH . 
Q 7 HOH A 71 771 79 HOH HOH . 
Q 7 HOH A 72 772 102 HOH HOH . 
Q 7 HOH A 73 773 65 HOH HOH . 
Q 7 HOH A 74 774 109 HOH HOH . 
Q 7 HOH A 75 775 180 HOH HOH . 
Q 7 HOH A 76 776 44 HOH HOH . 
Q 7 HOH A 77 777 51 HOH HOH . 
Q 7 HOH A 78 778 188 HOH HOH . 
Q 7 HOH A 79 779 84 HOH HOH . 
Q 7 HOH A 80 780 135 HOH HOH . 
Q 7 HOH A 81 781 224 HOH HOH . 
Q 7 HOH A 82 782 6 HOH HOH . 
Q 7 HOH A 83 783 56 HOH HOH . 
Q 7 HOH A 84 784 39 HOH HOH . 
Q 7 HOH A 85 785 113 HOH HOH . 
Q 7 HOH A 86 786 17 HOH HOH . 
Q 7 HOH A 87 787 95 HOH HOH . 
Q 7 HOH A 88 788 178 HOH HOH . 
Q 7 HOH A 89 789 61 HOH HOH . 
Q 7 HOH A 90 790 243 HOH HOH . 
Q 7 HOH A 91 791 166 HOH HOH . 
Q 7 HOH A 92 792 133 HOH HOH . 
Q 7 HOH A 93 793 219 HOH HOH . 
Q 7 HOH A 94 794 86 HOH HOH . 
Q 7 HOH A 95 795 236 HOH HOH . 
Q 7 HOH A 96 796 107 HOH HOH . 
Q 7 HOH A 97 797 198 HOH HOH . 
Q 7 HOH A 98 798 152 HOH HOH . 
Q 7 HOH A 99 799 80 HOH HOH . 
Q 7 HOH A 100 800 141 HOH HOH . 
Q 7 HOH A 101 801 88 HOH HOH . 
Q 7 HOH A 102 802 190 HOH HOH . 
Q 7 HOH A 103 803 179 HOH HOH . 
Q 7 HOH A 104 804 146 HOH HOH . 
Q 7 HOH A 105 805 228 HOH HOH . 
Q 7 HOH A 106 806 189 HOH HOH . 
Q 7 HOH A 107 807 158 HOH HOH . 
Q 7 HOH A 108 808 214 HOH HOH . 
Q 7 HOH A 109 809 237 HOH HOH . 
Q 7 HOH A 110 810 168 HOH HOH . 
Q 7 HOH A 111 811 167 HOH HOH . 
Q 7 HOH A 112 812 215 HOH HOH . 
Q 7 HOH A 113 813 182 HOH HOH . 
Q 7 HOH A 114 814 77 HOH HOH . 
R 7 HOH B 1 701 174 HOH HOH . 
R 7 HOH B 2 702 162 HOH HOH . 
R 7 HOH B 3 703 130 HOH HOH . 
R 7 HOH B 4 704 242 HOH HOH . 
R 7 HOH B 5 705 33 HOH HOH . 
R 7 HOH B 6 706 42 HOH HOH . 
R 7 HOH B 7 707 29 HOH HOH . 
R 7 HOH B 8 708 185 HOH HOH . 
R 7 HOH B 9 709 120 HOH HOH . 
R 7 HOH B 10 710 38 HOH HOH . 
R 7 HOH B 11 711 225 HOH HOH . 
R 7 HOH B 12 712 16 HOH HOH . 
R 7 HOH B 13 713 25 HOH HOH . 
R 7 HOH B 14 714 62 HOH HOH . 
R 7 HOH B 15 715 18 HOH HOH . 
R 7 HOH B 16 716 64 HOH HOH . 
R 7 HOH B 17 717 191 HOH HOH . 
R 7 HOH B 18 718 125 HOH HOH . 
R 7 HOH B 19 719 150 HOH HOH . 
R 7 HOH B 20 720 22 HOH HOH . 
R 7 HOH B 21 721 96 HOH HOH . 
R 7 HOH B 22 722 81 HOH HOH . 
R 7 HOH B 23 723 73 HOH HOH . 
R 7 HOH B 24 724 226 HOH HOH . 
R 7 HOH B 25 725 32 HOH HOH . 
R 7 HOH B 26 726 3 HOH HOH . 
R 7 HOH B 27 727 235 HOH HOH . 
R 7 HOH B 28 728 218 HOH HOH . 
R 7 HOH B 29 729 59 HOH HOH . 
R 7 HOH B 30 730 45 HOH HOH . 
R 7 HOH B 31 731 43 HOH HOH . 
R 7 HOH B 32 732 71 HOH HOH . 
R 7 HOH B 33 733 108 HOH HOH . 
R 7 HOH B 34 734 165 HOH HOH . 
R 7 HOH B 35 735 46 HOH HOH . 
R 7 HOH B 36 736 114 HOH HOH . 
R 7 HOH B 37 737 41 HOH HOH . 
R 7 HOH B 38 738 1 HOH HOH . 
R 7 HOH B 39 739 52 HOH HOH . 
R 7 HOH B 40 740 164 HOH HOH . 
R 7 HOH B 41 741 195 HOH HOH . 
R 7 HOH B 42 742 223 HOH HOH . 
R 7 HOH B 43 743 7 HOH HOH . 
R 7 HOH B 44 744 126 HOH HOH . 
R 7 HOH B 45 745 30 HOH HOH . 
R 7 HOH B 46 746 54 HOH HOH . 
R 7 HOH B 47 747 21 HOH HOH . 
R 7 HOH B 48 748 176 HOH HOH . 
R 7 HOH B 49 749 194 HOH HOH . 
R 7 HOH B 50 750 106 HOH HOH . 
R 7 HOH B 51 751 156 HOH HOH . 
R 7 HOH B 52 752 111 HOH HOH . 
R 7 HOH B 53 753 35 HOH HOH . 
R 7 HOH B 54 754 155 HOH HOH . 
R 7 HOH B 55 755 199 HOH HOH . 
R 7 HOH B 56 756 132 HOH HOH . 
R 7 HOH B 57 757 209 HOH HOH . 
R 7 HOH B 58 758 160 HOH HOH . 
R 7 HOH B 59 759 175 HOH HOH . 
R 7 HOH B 60 760 121 HOH HOH . 
R 7 HOH B 61 761 50 HOH HOH . 
R 7 HOH B 62 762 90 HOH HOH . 
R 7 HOH B 63 763 48 HOH HOH . 
R 7 HOH B 64 764 238 HOH HOH . 
R 7 HOH B 65 765 136 HOH HOH . 
R 7 HOH B 66 766 227 HOH HOH . 
R 7 HOH B 67 767 98 HOH HOH . 
R 7 HOH B 68 768 37 HOH HOH . 
R 7 HOH B 69 769 8 HOH HOH . 
R 7 HOH B 70 770 26 HOH HOH . 
R 7 HOH B 71 771 161 HOH HOH . 
R 7 HOH B 72 772 143 HOH HOH . 
R 7 HOH B 73 773 127 HOH HOH . 
R 7 HOH B 74 774 211 HOH HOH . 
R 7 HOH B 75 775 207 HOH HOH . 
R 7 HOH B 76 776 172 HOH HOH . 
R 7 HOH B 77 777 212 HOH HOH . 
R 7 HOH B 78 778 248 HOH HOH . 
R 7 HOH B 79 779 4 HOH HOH . 
R 7 HOH B 80 780 239 HOH HOH . 
R 7 HOH B 81 781 196 HOH HOH . 
R 7 HOH B 82 782 197 HOH HOH . 
R 7 HOH B 83 783 193 HOH HOH . 
R 7 HOH B 84 784 205 HOH HOH . 
R 7 HOH B 85 785 19 HOH HOH . 
R 7 HOH B 86 786 53 HOH HOH . 
R 7 HOH B 87 787 187 HOH HOH . 
R 7 HOH B 88 788 244 HOH HOH . 
R 7 HOH B 89 789 112 HOH HOH . 
R 7 HOH B 90 790 171 HOH HOH . 
R 7 HOH B 91 791 76 HOH HOH . 
R 7 HOH B 92 792 103 HOH HOH . 
R 7 HOH B 93 793 145 HOH HOH . 
R 7 HOH B 94 794 208 HOH HOH . 
R 7 HOH B 95 795 23 HOH HOH . 
R 7 HOH B 96 796 105 HOH HOH . 
R 7 HOH B 97 797 204 HOH HOH . 
R 7 HOH B 98 798 117 HOH HOH . 
R 7 HOH B 99 799 85 HOH HOH . 
R 7 HOH B 100 800 137 HOH HOH . 
R 7 HOH B 101 801 123 HOH HOH . 
R 7 HOH B 102 802 232 HOH HOH . 
R 7 HOH B 103 803 97 HOH HOH . 
R 7 HOH B 104 804 69 HOH HOH . 
R 7 HOH B 105 805 184 HOH HOH . 
R 7 HOH B 106 806 118 HOH HOH . 
R 7 HOH B 107 807 94 HOH HOH . 
R 7 HOH B 108 808 122 HOH HOH . 
R 7 HOH B 109 809 217 HOH HOH . 
R 7 HOH B 110 810 250 HOH HOH . 
R 7 HOH B 111 811 216 HOH HOH . 
R 7 HOH B 112 812 233 HOH HOH . 
R 7 HOH B 113 813 202 HOH HOH . 
R 7 HOH B 114 814 99 HOH HOH . 
R 7 HOH B 115 815 169 HOH HOH . 
R 7 HOH B 116 816 151 HOH HOH . 
R 7 HOH B 117 817 220 HOH HOH . 
R 7 HOH B 118 818 144 HOH HOH . 
R 7 HOH B 119 819 40 HOH HOH . 
R 7 HOH B 120 820 186 HOH HOH . 
R 7 HOH B 121 821 163 HOH HOH . 
R 7 HOH B 122 822 201 HOH HOH . 
R 7 HOH B 123 823 210 HOH HOH . 
R 7 HOH B 124 824 200 HOH HOH . 
R 7 HOH B 125 825 116 HOH HOH . 
R 7 HOH B 126 826 104 HOH HOH . 
R 7 HOH B 127 827 173 HOH HOH . 
R 7 HOH B 128 828 249 HOH HOH . 
R 7 HOH B 129 829 89 HOH HOH . 
R 7 HOH B 130 830 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 26.348 16.875 63.92 1 39.6 ? C1 GOL 602 A 1 
HETATM 2 O O1 GOL . . . D 3 26.682 17.366 65.185 1 50.55 ? O1 GOL 602 A 1 
HETATM 3 C C2 GOL . . . D 3 24.805 16.801 63.845 1 48.14 ? C2 GOL 602 A 1 
HETATM 4 O O2 GOL . . . D 3 24.293 15.737 64.574 1 38.06 ? O2 GOL 602 A 1 
HETATM 5 C C3 GOL . . . D 3 24.3 18.158 64.386 1 53.12 ? C3 GOL 602 A 1 
HETATM 6 O O3 GOL . . . D 3 24.762 19.149 63.52 1 44.93 ? O3 GOL 602 A 1 
HETATM 7 H H11 GOL . . . D 3 26.718 15.994 63.753 1 47.86 ? H11 GOL 602 A 1 
HETATM 8 H H12 GOL . . . D 3 26.675 17.441 63.203 1 47.86 ? H12 GOL 602 A 1 
HETATM 9 H HO1 GOL . . . D 3 27.53 17.422 65.21 1 61 ? HO1 GOL 602 A 1 
HETATM 10 H H2 GOL . . . D 3 24.527 16.664 62.926 1 58.11 ? H2 GOL 602 A 1 
HETATM 11 H HO2 GOL . . . D 3 23.447 15.82 64.6 1 46.01 ? HO2 GOL 602 A 1 
HETATM 12 H H31 GOL . . . D 3 24.615 18.268 65.297 1 64.08 ? H31 GOL 602 A 1 
HETATM 13 H H32 GOL . . . D 3 23.333 18.127 64.452 1 64.08 ? H32 GOL 602 A 1 
HETATM 14 H HO3 GOL . . . D 3 24.1 19.392 63.048 1 54.25 ? HO3 GOL 602 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           539 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#