data_8A59 # _model_server_result.job_id 6zbJUJ8iPXN2gJ6x5IaQ_A _model_server_result.datetime_utc '2024-12-26 23:14:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 8A59 # _exptl.entry_id 8A59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A59 _cell.length_a 63.712 _cell.length_b 112.504 _cell.length_c 73.262 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -63.712 0 -36.631 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 31 1_555 A SG CYS 18 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 35 A CYS 53 1_555 A SG CYS 162 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 86 A CYS 104 1_555 A SG CYS 118 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf4 A SG CYS 123 A CYS 141 1_555 A SG CYS 147 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf5 A SG CYS 170 A CYS 188 1_555 A SG CYS 222 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf6 A SG CYS 207 A CYS 225 1_555 A SG CYS 239 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8A59 _atom_sites.fract_transf_matrix[1][1] 0.015696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 2 GOL A 1 302 302 GOL GOL . D 2 GOL A 1 303 303 GOL GOL . E 2 GOL A 1 304 304 GOL GOL . F 2 GOL A 1 305 306 GOL GOL . G 2 GOL A 1 306 307 GOL GOL . H 3 SO4 A 1 307 2 SO4 SO4 . I 3 SO4 A 1 308 3 SO4 SO4 . J 3 SO4 A 1 309 5 SO4 SO4 . K 4 HOH A 1 401 67 HOH HOH . K 4 HOH A 2 402 75 HOH HOH . K 4 HOH A 3 403 32 HOH HOH . K 4 HOH A 4 404 73 HOH HOH . K 4 HOH A 5 405 89 HOH HOH . K 4 HOH A 6 406 77 HOH HOH . K 4 HOH A 7 407 94 HOH HOH . K 4 HOH A 8 408 20 HOH HOH . K 4 HOH A 9 409 36 HOH HOH . K 4 HOH A 10 410 16 HOH HOH . K 4 HOH A 11 411 74 HOH HOH . K 4 HOH A 12 412 99 HOH HOH . K 4 HOH A 13 413 97 HOH HOH . K 4 HOH A 14 414 81 HOH HOH . K 4 HOH A 15 415 78 HOH HOH . K 4 HOH A 16 416 72 HOH HOH . K 4 HOH A 17 417 35 HOH HOH . K 4 HOH A 18 418 82 HOH HOH . K 4 HOH A 19 419 52 HOH HOH . K 4 HOH A 20 420 11 HOH HOH . K 4 HOH A 21 421 41 HOH HOH . K 4 HOH A 22 422 101 HOH HOH . K 4 HOH A 23 423 53 HOH HOH . K 4 HOH A 24 424 29 HOH HOH . K 4 HOH A 25 425 56 HOH HOH . K 4 HOH A 26 426 69 HOH HOH . K 4 HOH A 27 427 91 HOH HOH . K 4 HOH A 28 428 95 HOH HOH . K 4 HOH A 29 429 93 HOH HOH . K 4 HOH A 30 430 55 HOH HOH . K 4 HOH A 31 431 54 HOH HOH . K 4 HOH A 32 432 47 HOH HOH . K 4 HOH A 33 433 26 HOH HOH . K 4 HOH A 34 434 62 HOH HOH . K 4 HOH A 35 435 24 HOH HOH . K 4 HOH A 36 436 96 HOH HOH . K 4 HOH A 37 437 61 HOH HOH . K 4 HOH A 38 438 76 HOH HOH . K 4 HOH A 39 439 25 HOH HOH . K 4 HOH A 40 440 92 HOH HOH . K 4 HOH A 41 441 98 HOH HOH . K 4 HOH A 42 442 7 HOH HOH . K 4 HOH A 43 443 48 HOH HOH . K 4 HOH A 44 444 8 HOH HOH . K 4 HOH A 45 445 27 HOH HOH . K 4 HOH A 46 446 80 HOH HOH . K 4 HOH A 47 447 57 HOH HOH . K 4 HOH A 48 448 86 HOH HOH . K 4 HOH A 49 449 68 HOH HOH . K 4 HOH A 50 450 49 HOH HOH . K 4 HOH A 51 451 28 HOH HOH . K 4 HOH A 52 452 38 HOH HOH . K 4 HOH A 53 453 5 HOH HOH . K 4 HOH A 54 454 87 HOH HOH . K 4 HOH A 55 455 103 HOH HOH . K 4 HOH A 56 456 21 HOH HOH . K 4 HOH A 57 457 64 HOH HOH . K 4 HOH A 58 458 19 HOH HOH . K 4 HOH A 59 459 15 HOH HOH . K 4 HOH A 60 460 40 HOH HOH . K 4 HOH A 61 461 90 HOH HOH . K 4 HOH A 62 462 31 HOH HOH . K 4 HOH A 63 463 100 HOH HOH . K 4 HOH A 64 464 58 HOH HOH . K 4 HOH A 65 465 60 HOH HOH . K 4 HOH A 66 466 88 HOH HOH . K 4 HOH A 67 467 102 HOH HOH . K 4 HOH A 68 468 83 HOH HOH . K 4 HOH A 69 469 50 HOH HOH . K 4 HOH A 70 470 44 HOH HOH . K 4 HOH A 71 471 85 HOH HOH . K 4 HOH A 72 472 30 HOH HOH . K 4 HOH A 73 473 12 HOH HOH . K 4 HOH A 74 474 9 HOH HOH . K 4 HOH A 75 475 59 HOH HOH . K 4 HOH A 76 476 42 HOH HOH . K 4 HOH A 77 477 79 HOH HOH . K 4 HOH A 78 478 39 HOH HOH . K 4 HOH A 79 479 65 HOH HOH . K 4 HOH A 80 480 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -53.994 -0.221 0.594 0.5 56.42 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 2 -52.742 0.336 0.992 0.5 57.98 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 2 -53.813 -1.569 -0.071 0.5 54.84 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 2 -54.758 -2.493 0.453 0.5 53.4 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 2 -53.933 -1.526 -1.579 0.5 47.96 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 2 -53.122 -2.529 -2.18 0.5 47.4 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #