data_8A5U
#
_model_server_result.job_id            Yer8gJ5ltCNmb71Tne8TCQ 
_model_server_result.datetime_utc      '2024-10-10 03:24:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    8A5U 
#
_exptl.entry_id    8A5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A5U 
_cell.length_a            50.998 
_cell.length_b            66.772 
_cell.length_c            73.591 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 137 B CYS 129 1_555 A SG CYS 151 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 A ND2 ASN 122 B ASN 114 1_555 C C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale2 A ND2 ASN 150 B ASN 142 1_555 B C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 106 n n 
C1 C2 EDO sing 107 n n 
C1 H11 EDO sing 108 n n 
C1 H12 EDO sing 109 n n 
O1 HO1 EDO sing 110 n n 
C2 O2 EDO sing 111 n n 
C2 H21 EDO sing 112 n n 
C2 H22 EDO sing 113 n n 
O2 HO2 EDO sing 114 n n 
#
_atom_sites.entry_id                     8A5U 
_atom_sites.fract_transf_matrix[1][1]    0.019609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG B 1 301 209 NAG NAG . 
C 2 NAG B 1 302 210 NAG NAG . 
D 3 BCN B 1 303 401 BCN BCN . 
E 4 EDO B 1 304 501 EDO EDO . 
F 5 HOH B 1 401 30 HOH HOH . 
F 5 HOH B 2 402 8 HOH HOH . 
F 5 HOH B 3 403 15 HOH HOH . 
F 5 HOH B 4 404 37 HOH HOH . 
F 5 HOH B 5 405 1 HOH HOH . 
F 5 HOH B 6 406 48 HOH HOH . 
F 5 HOH B 7 407 7 HOH HOH . 
F 5 HOH B 8 408 5 HOH HOH . 
F 5 HOH B 9 409 3 HOH HOH . 
F 5 HOH B 10 410 43 HOH HOH . 
F 5 HOH B 11 411 17 HOH HOH . 
F 5 HOH B 12 412 4 HOH HOH . 
F 5 HOH B 13 413 19 HOH HOH . 
F 5 HOH B 14 414 6 HOH HOH . 
F 5 HOH B 15 415 10 HOH HOH . 
F 5 HOH B 16 416 22 HOH HOH . 
F 5 HOH B 17 417 46 HOH HOH . 
F 5 HOH B 18 418 2 HOH HOH . 
F 5 HOH B 19 419 18 HOH HOH . 
F 5 HOH B 20 420 9 HOH HOH . 
F 5 HOH B 21 421 13 HOH HOH . 
F 5 HOH B 22 422 50 HOH HOH . 
F 5 HOH B 23 423 47 HOH HOH . 
F 5 HOH B 24 424 25 HOH HOH . 
F 5 HOH B 25 425 21 HOH HOH . 
F 5 HOH B 26 426 12 HOH HOH . 
F 5 HOH B 27 427 20 HOH HOH . 
F 5 HOH B 28 428 45 HOH HOH . 
F 5 HOH B 29 429 52 HOH HOH . 
F 5 HOH B 30 430 42 HOH HOH . 
F 5 HOH B 31 431 28 HOH HOH . 
F 5 HOH B 32 432 40 HOH HOH . 
F 5 HOH B 33 433 14 HOH HOH . 
F 5 HOH B 34 434 16 HOH HOH . 
F 5 HOH B 35 435 27 HOH HOH . 
F 5 HOH B 36 436 36 HOH HOH . 
F 5 HOH B 37 437 24 HOH HOH . 
F 5 HOH B 38 438 41 HOH HOH . 
F 5 HOH B 39 439 35 HOH HOH . 
F 5 HOH B 40 440 23 HOH HOH . 
F 5 HOH B 41 441 11 HOH HOH . 
F 5 HOH B 42 442 49 HOH HOH . 
F 5 HOH B 43 443 39 HOH HOH . 
F 5 HOH B 44 444 34 HOH HOH . 
F 5 HOH B 45 445 44 HOH HOH . 
F 5 HOH B 46 446 26 HOH HOH . 
F 5 HOH B 47 447 38 HOH HOH . 
F 5 HOH B 48 448 33 HOH HOH . 
F 5 HOH B 49 449 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 19.434 -10.071 14.912 1 77.36 ? C1 EDO 304 B 1 
HETATM 2 O O1 EDO . . . E 4 19.454 -8.979 15.838 1 71.34 ? O1 EDO 304 B 1 
HETATM 3 C C2 EDO . . . E 4 18.949 -11.304 15.67 1 69.29 ? C2 EDO 304 B 1 
HETATM 4 O O2 EDO . . . E 4 18.055 -10.846 16.703 1 66.04 ? O2 EDO 304 B 1 
HETATM 5 H H11 EDO . . . E 4 20.433 -10.243 14.506 1 92.71 ? H11 EDO 304 B 1 
HETATM 6 H H12 EDO . . . E 4 18.766 -9.85 14.077 1 92.71 ? H12 EDO 304 B 1 
HETATM 7 H HO1 EDO . . . E 4 19.198 -9.296 16.715 1 85.48 ? HO1 EDO 304 B 1 
HETATM 8 H H21 EDO . . . E 4 19.794 -11.84 16.108 1 83.03 ? H21 EDO 304 B 1 
HETATM 9 H H22 EDO . . . E 4 18.431 -11.988 14.994 1 83.03 ? H22 EDO 304 B 1 
HETATM 10 H HO2 EDO . . . E 4 17.249 -11.379 16.691 1 79.12 ? HO2 EDO 304 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#