data_8A6D # _model_server_result.job_id UAZqkOGQ0ejpCHs5egq-cQ _model_server_result.datetime_utc '2024-11-22 20:46:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":409}' # _entry.id 8A6D # _exptl.entry_id 8A6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A6D _cell.length_a 61.51 _cell.length_b 91.01 _cell.length_c 151.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,AA 1 1 B,D,S,T,U,V,W,X,Y,Z,BA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -45.505 75.555 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 V N N ? 7 W N N ? 7 X N N ? 7 Z N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 501 NAG 2 n C NAG 2 C 2 NAG A 601 NAG 2 n D NAG 1 D 1 NAG B 501 NAG 2 n D NAG 2 D 2 NAG B 601 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A N MET 1 A MET 1 1_555 E C ACE . A ACE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A ND2 ASN 2 A ASN 2 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A NZ LYS 296 A LYS 296 1_555 F C15 RET . A RET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A SG CYS 322 A CYS 322 1_555 N C1 PLM . A PLM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale6 B N MET 1 B MET 1 1_555 S C ACE . B ACE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B ND2 ASN 2 B ASN 2 1_555 U C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 B ND2 ASN 15 B ASN 15 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B NZ LYS 296 B LYS 296 1_555 T C15 RET . B RET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale10 B SG CYS 322 B CYS 322 1_555 Y C1 PLM . B PLM 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 310 n n C10 C9 OLC doub 311 n n C10 C11 OLC sing 312 n n C9 C8 OLC sing 313 n n C17 C16 OLC sing 314 z n C11 C12 OLC sing 315 n n C8 C7 OLC sing 316 n n C24 C22 OLC sing 317 n n C24 O25 OLC sing 318 n n C16 C15 OLC sing 319 n n C12 C13 OLC sing 320 n n C7 C6 OLC sing 321 n n C15 C14 OLC sing 322 n n C13 C14 OLC sing 323 n n C6 C5 OLC sing 324 n n C5 C4 OLC sing 325 n n C4 C3 OLC sing 326 n n C3 C2 OLC sing 327 n n C2 C1 OLC sing 328 n n C21 C22 OLC sing 329 n n C21 O20 OLC sing 330 n n C1 O19 OLC doub 331 n n C1 O20 OLC sing 332 n n C22 O23 OLC sing 333 n n C18 H18 OLC sing 334 n n C18 H18A OLC sing 335 n n C18 H18B OLC sing 336 n n C10 H10 OLC sing 337 n n C9 H9 OLC sing 338 n n C17 H17 OLC sing 339 n n C17 H17A OLC sing 340 n n C11 H11 OLC sing 341 n n C11 H11A OLC sing 342 n n C8 H8 OLC sing 343 n n C8 H8A OLC sing 344 n n C24 H24 OLC sing 345 n n C24 H24A OLC sing 346 n n C16 H16 OLC sing 347 n n C16 H16A OLC sing 348 n n C12 H12 OLC sing 349 n n C12 H12A OLC sing 350 n n C7 H7 OLC sing 351 n n C7 H7A OLC sing 352 n n C15 H15 OLC sing 353 n n C15 H15A OLC sing 354 n n C13 H13 OLC sing 355 n n C13 H13A OLC sing 356 n n C6 H6 OLC sing 357 n n C6 H6A OLC sing 358 n n C14 H14 OLC sing 359 n n C14 H14A OLC sing 360 n n C5 H5 OLC sing 361 n n C5 H5A OLC sing 362 n n C4 H4 OLC sing 363 n n C4 H4A OLC sing 364 n n C3 H3 OLC sing 365 n n C3 H3A OLC sing 366 n n C2 H2 OLC sing 367 n n C2 H2A OLC sing 368 n n C21 H21 OLC sing 369 n n C21 H21A OLC sing 370 n n C22 H22 OLC sing 371 n n O25 HO25 OLC sing 372 n n O23 HO23 OLC sing 373 n n # _atom_sites.entry_id 8A6D _atom_sites.fract_transf_matrix[1][1] 0.016258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ACE A 1 401 0 ACE ACE . F 4 RET A 1 402 401 RET RET . G 5 NAG A 1 403 701 NAG NAG . H 6 DAO A 1 404 702 DAO DAO . I 7 OLC A 1 405 801 OLC OLC . J 7 OLC A 1 406 802 OLC OLC . K 7 OLC A 1 407 805 OLC OLC . L 7 OLC A 1 408 806 OLC OLC . M 7 OLC A 1 409 808 OLC OLC . N 8 PLM A 1 410 809 PLM PLM . O 7 OLC A 1 411 811 OLC OLC . P 7 OLC A 1 412 702 OLC OLC . Q 7 OLC A 1 413 705 OLC OLC . R 7 OLC A 1 414 709 OLC OLC . S 3 ACE B 1 401 0 ACE ACE . T 4 RET B 1 402 401 RET RET . U 5 NAG B 1 403 701 NAG NAG . V 7 OLC B 1 404 704 OLC OLC . W 7 OLC B 1 405 706 OLC OLC . X 7 OLC B 1 406 707 OLC OLC . Y 8 PLM B 1 407 708 PLM PLM . Z 7 OLC B 1 408 801 OLC OLC . AA 9 HOH A 1 501 27 HOH HOH . AA 9 HOH A 2 502 38 HOH HOH . AA 9 HOH A 3 503 63 HOH HOH . AA 9 HOH A 4 504 100 HOH HOH . AA 9 HOH A 5 505 28 HOH HOH . AA 9 HOH A 6 506 103 HOH HOH . AA 9 HOH A 7 507 2 HOH HOH . AA 9 HOH A 8 508 19 HOH HOH . AA 9 HOH A 9 509 52 HOH HOH . AA 9 HOH A 10 510 45 HOH HOH . AA 9 HOH A 11 511 55 HOH HOH . AA 9 HOH A 12 512 20 HOH HOH . AA 9 HOH A 13 513 64 HOH HOH . AA 9 HOH A 14 514 33 HOH HOH . AA 9 HOH A 15 515 24 HOH HOH . AA 9 HOH A 16 516 46 HOH HOH . AA 9 HOH A 17 517 1 HOH HOH . AA 9 HOH A 18 518 30 HOH HOH . AA 9 HOH A 19 519 44 HOH HOH . AA 9 HOH A 20 520 9 HOH HOH . AA 9 HOH A 21 521 185 HOH HOH . AA 9 HOH A 22 522 131 HOH HOH . AA 9 HOH A 23 523 15 HOH HOH . AA 9 HOH A 24 524 23 HOH HOH . AA 9 HOH A 25 525 50 HOH HOH . AA 9 HOH A 26 526 68 HOH HOH . AA 9 HOH A 27 527 14 HOH HOH . AA 9 HOH A 28 528 13 HOH HOH . AA 9 HOH A 29 529 49 HOH HOH . AA 9 HOH A 30 530 29 HOH HOH . AA 9 HOH A 31 531 138 HOH HOH . AA 9 HOH A 32 532 184 HOH HOH . AA 9 HOH A 33 533 62 HOH HOH . AA 9 HOH A 34 534 6 HOH HOH . AA 9 HOH A 35 535 169 HOH HOH . AA 9 HOH A 36 536 179 HOH HOH . AA 9 HOH A 37 537 164 HOH HOH . AA 9 HOH A 38 538 59 HOH HOH . AA 9 HOH A 39 539 147 HOH HOH . AA 9 HOH A 40 540 56 HOH HOH . AA 9 HOH A 41 541 84 HOH HOH . AA 9 HOH A 42 542 93 HOH HOH . AA 9 HOH A 43 543 142 HOH HOH . AA 9 HOH A 44 544 75 HOH HOH . AA 9 HOH A 45 545 161 HOH HOH . AA 9 HOH A 46 546 133 HOH HOH . AA 9 HOH A 47 547 116 HOH HOH . AA 9 HOH A 48 548 41 HOH HOH . AA 9 HOH A 49 549 21 HOH HOH . AA 9 HOH A 50 550 88 HOH HOH . AA 9 HOH A 51 551 70 HOH HOH . AA 9 HOH A 52 552 97 HOH HOH . AA 9 HOH A 53 553 81 HOH HOH . AA 9 HOH A 54 554 157 HOH HOH . AA 9 HOH A 55 555 71 HOH HOH . BA 9 HOH B 1 501 39 HOH HOH . BA 9 HOH B 2 502 37 HOH HOH . BA 9 HOH B 3 503 82 HOH HOH . BA 9 HOH B 4 504 128 HOH HOH . BA 9 HOH B 5 505 165 HOH HOH . BA 9 HOH B 6 506 54 HOH HOH . BA 9 HOH B 7 507 113 HOH HOH . BA 9 HOH B 8 508 4 HOH HOH . BA 9 HOH B 9 509 76 HOH HOH . BA 9 HOH B 10 510 102 HOH HOH . BA 9 HOH B 11 511 42 HOH HOH . BA 9 HOH B 12 512 18 HOH HOH . BA 9 HOH B 13 513 163 HOH HOH . BA 9 HOH B 14 514 151 HOH HOH . BA 9 HOH B 15 515 85 HOH HOH . BA 9 HOH B 16 516 11 HOH HOH . BA 9 HOH B 17 517 25 HOH HOH . BA 9 HOH B 18 518 26 HOH HOH . BA 9 HOH B 19 519 205 HOH HOH . BA 9 HOH B 20 520 60 HOH HOH . BA 9 HOH B 21 521 124 HOH HOH . BA 9 HOH B 22 522 47 HOH HOH . BA 9 HOH B 23 523 127 HOH HOH . BA 9 HOH B 24 524 79 HOH HOH . BA 9 HOH B 25 525 17 HOH HOH . BA 9 HOH B 26 526 69 HOH HOH . BA 9 HOH B 27 527 51 HOH HOH . BA 9 HOH B 28 528 10 HOH HOH . BA 9 HOH B 29 529 109 HOH HOH . BA 9 HOH B 30 530 43 HOH HOH . BA 9 HOH B 31 531 36 HOH HOH . BA 9 HOH B 32 532 173 HOH HOH . BA 9 HOH B 33 533 48 HOH HOH . BA 9 HOH B 34 534 3 HOH HOH . BA 9 HOH B 35 535 89 HOH HOH . BA 9 HOH B 36 536 16 HOH HOH . BA 9 HOH B 37 537 171 HOH HOH . BA 9 HOH B 38 538 12 HOH HOH . BA 9 HOH B 39 539 95 HOH HOH . BA 9 HOH B 40 540 211 HOH HOH . BA 9 HOH B 41 541 31 HOH HOH . BA 9 HOH B 42 542 22 HOH HOH . BA 9 HOH B 43 543 112 HOH HOH . BA 9 HOH B 44 544 65 HOH HOH . BA 9 HOH B 45 545 94 HOH HOH . BA 9 HOH B 46 546 192 HOH HOH . BA 9 HOH B 47 547 40 HOH HOH . BA 9 HOH B 48 548 77 HOH HOH . BA 9 HOH B 49 549 72 HOH HOH . BA 9 HOH B 50 550 57 HOH HOH . BA 9 HOH B 51 551 177 HOH HOH . BA 9 HOH B 52 552 5 HOH HOH . BA 9 HOH B 53 553 148 HOH HOH . BA 9 HOH B 54 554 106 HOH HOH . BA 9 HOH B 55 555 35 HOH HOH . BA 9 HOH B 56 556 210 HOH HOH . BA 9 HOH B 57 557 141 HOH HOH . BA 9 HOH B 58 558 193 HOH HOH . BA 9 HOH B 59 559 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 7 24.395 22.456 45.94 1 62.5 ? C10 OLC 409 A 1 HETATM 2 C C9 OLC . . . M 7 24.298 21.535 46.87 1 67.13 ? C9 OLC 409 A 1 HETATM 3 C C11 OLC . . . M 7 24.55 22.255 44.464 1 66.51 ? C11 OLC 409 A 1 HETATM 4 C C8 OLC . . . M 7 24.166 21.858 48.325 1 57.78 ? C8 OLC 409 A 1 HETATM 5 C C12 OLC . . . M 7 24.586 23.538 43.69 1 50.93 ? C12 OLC 409 A 1 HETATM 6 C C7 OLC . . . M 7 24.017 20.675 49.236 1 53.86 ? C7 OLC 409 A 1 HETATM 7 C C13 OLC . . . M 7 24.698 23.36 42.185 1 43.72 ? C13 OLC 409 A 1 HETATM 8 C C6 OLC . . . M 7 23.907 21.084 50.7 1 59.45 ? C6 OLC 409 A 1 HETATM 9 C C5 OLC . . . M 7 23.642 19.97 51.682 1 61.77 ? C5 OLC 409 A 1 HETATM 10 C C4 OLC . . . M 7 23.381 20.466 53.086 1 60.05 ? C4 OLC 409 A 1 HETATM 11 C C3 OLC . . . M 7 23.008 19.386 54.083 1 67.1 ? C3 OLC 409 A 1 HETATM 12 C C2 OLC . . . M 7 22.685 19.946 55.432 1 75.61 ? C2 OLC 409 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #