data_8A6E # _model_server_result.job_id C0f-0j4iEOI8TgFoGLCA7w _model_server_result.datetime_utc '2024-11-23 01:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":806}' # _entry.id 8A6E # _exptl.entry_id 8A6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A6E _cell.length_a 61.29 _cell.length_b 90.81 _cell.length_c 150.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,Y 1 1 B,D,S,T,U,V,W,X,Z 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -45.405 75.255 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 U N N ? 6 V N N ? 6 X N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 501 NAG 2 n C NAG 2 C 2 NAG A 601 NAG 2 n D NAG 1 D 1 NAG B 501 NAG 2 n D NAG 2 D 2 NAG B 601 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 511 1_555 A SG CYS 188 A CYS 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 111 B CYS 511 1_555 B SG CYS 188 B CYS 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A C ACE 1 A ACE 401 1_555 A N MET 2 A MET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A ND2 ASN 3 A ASN 403 1_555 F C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 16 A ASN 416 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 A NZ LYS 297 A LYS 697 1_555 E C15 RET . A RET 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A SG CYS 323 A CYS 723 1_555 M C1 PLM . A PLM 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale6 B C ACE 1 B ACE 401 1_555 B N MET 2 B MET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B ND2 ASN 3 B ASN 403 1_555 T C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 B ND2 ASN 16 B ASN 416 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B NZ LYS 297 B LYS 697 1_555 S C15 RET . B RET 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 B SG CYS 323 B CYS 723 1_555 W C1 PLM . B PLM 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 310 n n C10 C9 OLC doub 311 n n C10 C11 OLC sing 312 n n C9 C8 OLC sing 313 n n C17 C16 OLC sing 314 z n C11 C12 OLC sing 315 n n C8 C7 OLC sing 316 n n C24 C22 OLC sing 317 n n C24 O25 OLC sing 318 n n C16 C15 OLC sing 319 n n C12 C13 OLC sing 320 n n C7 C6 OLC sing 321 n n C15 C14 OLC sing 322 n n C13 C14 OLC sing 323 n n C6 C5 OLC sing 324 n n C5 C4 OLC sing 325 n n C4 C3 OLC sing 326 n n C3 C2 OLC sing 327 n n C2 C1 OLC sing 328 n n C21 C22 OLC sing 329 n n C21 O20 OLC sing 330 n n C1 O19 OLC doub 331 n n C1 O20 OLC sing 332 n n C22 O23 OLC sing 333 n n C18 H18 OLC sing 334 n n C18 H18A OLC sing 335 n n C18 H18B OLC sing 336 n n C10 H10 OLC sing 337 n n C9 H9 OLC sing 338 n n C17 H17 OLC sing 339 n n C17 H17A OLC sing 340 n n C11 H11 OLC sing 341 n n C11 H11A OLC sing 342 n n C8 H8 OLC sing 343 n n C8 H8A OLC sing 344 n n C24 H24 OLC sing 345 n n C24 H24A OLC sing 346 n n C16 H16 OLC sing 347 n n C16 H16A OLC sing 348 n n C12 H12 OLC sing 349 n n C12 H12A OLC sing 350 n n C7 H7 OLC sing 351 n n C7 H7A OLC sing 352 n n C15 H15 OLC sing 353 n n C15 H15A OLC sing 354 n n C13 H13 OLC sing 355 n n C13 H13A OLC sing 356 n n C6 H6 OLC sing 357 n n C6 H6A OLC sing 358 n n C14 H14 OLC sing 359 n n C14 H14A OLC sing 360 n n C5 H5 OLC sing 361 n n C5 H5A OLC sing 362 n n C4 H4 OLC sing 363 n n C4 H4A OLC sing 364 n n C3 H3 OLC sing 365 n n C3 H3A OLC sing 366 n n C2 H2 OLC sing 367 n n C2 H2A OLC sing 368 n n C21 H21 OLC sing 369 n n C21 H21A OLC sing 370 n n C22 H22 OLC sing 371 n n O25 HO25 OLC sing 372 n n O23 HO23 OLC sing 373 n n # _atom_sites.entry_id 8A6E _atom_sites.fract_transf_matrix[1][1] 0.016316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 RET A 1 801 401 RET RET . F 4 NAG A 1 802 701 NAG NAG . G 5 DAO A 1 803 702 DAO DAO . H 6 OLC A 1 804 801 OLC OLC . I 6 OLC A 1 805 802 OLC OLC . J 6 OLC A 1 806 805 OLC OLC . K 6 OLC A 1 807 806 OLC OLC . L 6 OLC A 1 808 808 OLC OLC . M 7 PLM A 1 809 809 PLM PLM . N 6 OLC A 1 810 811 OLC OLC . O 6 OLC A 1 811 702 OLC OLC . P 6 OLC A 1 812 705 OLC OLC . Q 6 OLC A 1 813 707 OLC OLC . R 6 OLC A 1 814 709 OLC OLC . S 3 RET B 1 801 401 RET RET . T 4 NAG B 1 802 701 NAG NAG . U 6 OLC B 1 803 704 OLC OLC . V 6 OLC B 1 804 706 OLC OLC . W 7 PLM B 1 805 708 PLM PLM . X 6 OLC B 1 806 801 OLC OLC . Y 8 HOH A 1 901 19 HOH HOH . Y 8 HOH A 2 902 38 HOH HOH . Y 8 HOH A 3 903 140 HOH HOH . Y 8 HOH A 4 904 190 HOH HOH . Y 8 HOH A 5 905 163 HOH HOH . Y 8 HOH A 6 906 1 HOH HOH . Y 8 HOH A 7 907 133 HOH HOH . Y 8 HOH A 8 908 28 HOH HOH . Y 8 HOH A 9 909 100 HOH HOH . Y 8 HOH A 10 910 45 HOH HOH . Y 8 HOH A 11 911 64 HOH HOH . Y 8 HOH A 12 912 24 HOH HOH . Y 8 HOH A 13 913 32 HOH HOH . Y 8 HOH A 14 914 180 HOH HOH . Y 8 HOH A 15 915 7 HOH HOH . Y 8 HOH A 16 916 84 HOH HOH . Y 8 HOH A 17 917 131 HOH HOH . Y 8 HOH A 18 918 23 HOH HOH . Y 8 HOH A 19 919 27 HOH HOH . Y 8 HOH A 20 920 103 HOH HOH . Y 8 HOH A 21 921 55 HOH HOH . Y 8 HOH A 22 922 13 HOH HOH . Y 8 HOH A 23 923 2 HOH HOH . Y 8 HOH A 24 924 15 HOH HOH . Y 8 HOH A 25 925 184 HOH HOH . Y 8 HOH A 26 926 14 HOH HOH . Y 8 HOH A 27 927 34 HOH HOH . Y 8 HOH A 28 928 49 HOH HOH . Y 8 HOH A 29 929 93 HOH HOH . Y 8 HOH A 30 930 52 HOH HOH . Y 8 HOH A 31 931 33 HOH HOH . Y 8 HOH A 32 932 117 HOH HOH . Y 8 HOH A 33 933 9 HOH HOH . Y 8 HOH A 34 934 143 HOH HOH . Y 8 HOH A 35 935 59 HOH HOH . Y 8 HOH A 36 936 194 HOH HOH . Y 8 HOH A 37 937 50 HOH HOH . Y 8 HOH A 38 938 46 HOH HOH . Y 8 HOH A 39 939 134 HOH HOH . Y 8 HOH A 40 940 62 HOH HOH . Y 8 HOH A 41 941 169 HOH HOH . Y 8 HOH A 42 942 68 HOH HOH . Y 8 HOH A 43 943 41 HOH HOH . Y 8 HOH A 44 944 44 HOH HOH . Y 8 HOH A 45 945 29 HOH HOH . Y 8 HOH A 46 946 70 HOH HOH . Y 8 HOH A 47 947 170 HOH HOH . Y 8 HOH A 48 948 63 HOH HOH . Y 8 HOH A 49 949 123 HOH HOH . Y 8 HOH A 50 950 66 HOH HOH . Y 8 HOH A 51 951 8 HOH HOH . Y 8 HOH A 52 952 185 HOH HOH . Y 8 HOH A 53 953 20 HOH HOH . Y 8 HOH A 54 954 162 HOH HOH . Y 8 HOH A 55 955 116 HOH HOH . Y 8 HOH A 56 956 88 HOH HOH . Y 8 HOH A 57 957 81 HOH HOH . Y 8 HOH A 58 958 161 HOH HOH . Y 8 HOH A 59 959 97 HOH HOH . Y 8 HOH A 60 960 157 HOH HOH . Y 8 HOH A 61 961 115 HOH HOH . Y 8 HOH A 62 962 158 HOH HOH . Y 8 HOH A 63 963 30 HOH HOH . Y 8 HOH A 64 964 175 HOH HOH . Y 8 HOH A 65 965 21 HOH HOH . Y 8 HOH A 66 966 75 HOH HOH . Y 8 HOH A 67 967 188 HOH HOH . Y 8 HOH A 68 968 56 HOH HOH . Y 8 HOH A 69 969 71 HOH HOH . Y 8 HOH A 70 970 174 HOH HOH . Y 8 HOH A 71 971 6 HOH HOH . Y 8 HOH A 72 972 179 HOH HOH . Y 8 HOH A 73 973 186 HOH HOH . Y 8 HOH A 74 974 189 HOH HOH . Y 8 HOH A 75 975 191 HOH HOH . Z 8 HOH B 1 901 152 HOH HOH . Z 8 HOH B 2 902 18 HOH HOH . Z 8 HOH B 3 903 39 HOH HOH . Z 8 HOH B 4 904 53 HOH HOH . Z 8 HOH B 5 905 25 HOH HOH . Z 8 HOH B 6 906 177 HOH HOH . Z 8 HOH B 7 907 57 HOH HOH . Z 8 HOH B 8 908 69 HOH HOH . Z 8 HOH B 9 909 43 HOH HOH . Z 8 HOH B 10 910 36 HOH HOH . Z 8 HOH B 11 911 124 HOH HOH . Z 8 HOH B 12 912 42 HOH HOH . Z 8 HOH B 13 913 114 HOH HOH . Z 8 HOH B 14 914 195 HOH HOH . Z 8 HOH B 15 915 54 HOH HOH . Z 8 HOH B 16 916 51 HOH HOH . Z 8 HOH B 17 917 83 HOH HOH . Z 8 HOH B 18 918 151 HOH HOH . Z 8 HOH B 19 919 11 HOH HOH . Z 8 HOH B 20 920 26 HOH HOH . Z 8 HOH B 21 921 10 HOH HOH . Z 8 HOH B 22 922 122 HOH HOH . Z 8 HOH B 23 923 4 HOH HOH . Z 8 HOH B 24 924 102 HOH HOH . Z 8 HOH B 25 925 37 HOH HOH . Z 8 HOH B 26 926 3 HOH HOH . Z 8 HOH B 27 927 148 HOH HOH . Z 8 HOH B 28 928 17 HOH HOH . Z 8 HOH B 29 929 58 HOH HOH . Z 8 HOH B 30 930 48 HOH HOH . Z 8 HOH B 31 931 85 HOH HOH . Z 8 HOH B 32 932 67 HOH HOH . Z 8 HOH B 33 933 40 HOH HOH . Z 8 HOH B 34 934 31 HOH HOH . Z 8 HOH B 35 935 22 HOH HOH . Z 8 HOH B 36 936 120 HOH HOH . Z 8 HOH B 37 937 65 HOH HOH . Z 8 HOH B 38 938 16 HOH HOH . Z 8 HOH B 39 939 12 HOH HOH . Z 8 HOH B 40 940 128 HOH HOH . Z 8 HOH B 41 941 35 HOH HOH . Z 8 HOH B 42 942 79 HOH HOH . Z 8 HOH B 43 943 47 HOH HOH . Z 8 HOH B 44 944 125 HOH HOH . Z 8 HOH B 45 945 5 HOH HOH . Z 8 HOH B 46 946 82 HOH HOH . Z 8 HOH B 47 947 72 HOH HOH . Z 8 HOH B 48 948 150 HOH HOH . Z 8 HOH B 49 949 165 HOH HOH . Z 8 HOH B 50 950 94 HOH HOH . Z 8 HOH B 51 951 126 HOH HOH . Z 8 HOH B 52 952 192 HOH HOH . Z 8 HOH B 53 953 173 HOH HOH . Z 8 HOH B 54 954 60 HOH HOH . Z 8 HOH B 55 955 77 HOH HOH . Z 8 HOH B 56 956 144 HOH HOH . Z 8 HOH B 57 957 106 HOH HOH . Z 8 HOH B 58 958 89 HOH HOH . Z 8 HOH B 59 959 95 HOH HOH . Z 8 HOH B 60 960 146 HOH HOH . Z 8 HOH B 61 961 109 HOH HOH . Z 8 HOH B 62 962 141 HOH HOH . Z 8 HOH B 63 963 153 HOH HOH . Z 8 HOH B 64 964 193 HOH HOH . Z 8 HOH B 65 965 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . J 6 15.802 39.412 28.053 1 44.37 ? C10 OLC 806 A 1 HETATM 2 C C9 OLC . . . J 6 14.785 40.14 28.435 1 43.9 ? C9 OLC 806 A 1 HETATM 3 C C11 OLC . . . J 6 16.686 38.588 28.937 1 38.88 ? C11 OLC 806 A 1 HETATM 4 C C8 OLC . . . J 6 13.942 40.969 27.515 1 42.25 ? C8 OLC 806 A 1 HETATM 5 C C12 OLC . . . J 6 16.754 37.15 28.529 1 35.63 ? C12 OLC 806 A 1 HETATM 6 C C7 OLC . . . J 6 12.872 41.743 28.217 1 38.19 ? C7 OLC 806 A 1 HETATM 7 C C13 OLC . . . J 6 17.713 36.313 29.358 1 45.99 ? C13 OLC 806 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #