data_8A7R # _model_server_result.job_id WbkR7j07bKUPyG68wF0iLw _model_server_result.datetime_utc '2024-11-13 16:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 8A7R # _exptl.entry_id 8A7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.85 _cell.angle_gamma 90 _cell.entry_id 8A7R _cell.length_a 59.01 _cell.length_b 78.39 _cell.length_c 88.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 96 A ASP 179 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A OD1 ASP 96 A ASP 179 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 A OD1 ASP 100 A ASP 183 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc4 A OD2 ASP 100 A ASP 183 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc5 A OD2 ASP 100 A ASP 183 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 A OD2 ASP 236 A ASP 319 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc7 C MG MG . A MG 501 1_555 G O1A GPP . A GPP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc8 C MG MG . A MG 501 1_555 J O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 C MG MG . A MG 501 1_555 J O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 C MG MG . A MG 501 1_555 J O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc11 D MG MG . A MG 502 1_555 G O1A GPP . A GPP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc12 D MG MG . A MG 502 1_555 G O1B GPP . A GPP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 D MG MG . A MG 502 1_555 J O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc14 D MG MG . A MG 502 1_555 J O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 E MG MG . A MG 503 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc16 E MG MG . A MG 503 1_555 J O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc17 E MG MG . A MG 503 1_555 J O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc18 E MG MG . A MG 503 1_555 J O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc19 E MG MG . A MG 503 1_555 J O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc20 B OD2 ASP 236 B ASP 319 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc21 H MG MG . B MG 501 1_555 K O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc22 H MG MG . B MG 501 1_555 K O HOH . B HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc23 H MG MG . B MG 501 1_555 K O HOH . B HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc24 H MG MG . B MG 501 1_555 K O HOH . B HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc25 H MG MG . B MG 501 1_555 K O HOH . B HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc26 H MG MG . B MG 501 1_555 K O HOH . B HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8A7R _atom_sites.fract_transf_matrix[1][1] 0.016946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 584 MG MG . D 2 MG A 1 502 585 MG MG . E 2 MG A 1 503 586 MG MG . F 3 MES A 1 504 784 MES MES . G 4 GPP A 1 505 984 GPP GPP . H 2 MG B 1 501 584 MG MG . I 5 GOL B 1 502 684 GOL GOL . J 6 HOH A 1 601 120 HOH HOH . J 6 HOH A 2 602 4 HOH HOH . J 6 HOH A 3 603 60 HOH HOH . J 6 HOH A 4 604 122 HOH HOH . J 6 HOH A 5 605 17 HOH HOH . J 6 HOH A 6 606 100 HOH HOH . J 6 HOH A 7 607 126 HOH HOH . J 6 HOH A 8 608 18 HOH HOH . J 6 HOH A 9 609 131 HOH HOH . J 6 HOH A 10 610 103 HOH HOH . J 6 HOH A 11 611 90 HOH HOH . J 6 HOH A 12 612 35 HOH HOH . J 6 HOH A 13 613 125 HOH HOH . J 6 HOH A 14 614 83 HOH HOH . J 6 HOH A 15 615 29 HOH HOH . J 6 HOH A 16 616 116 HOH HOH . J 6 HOH A 17 617 96 HOH HOH . J 6 HOH A 18 618 45 HOH HOH . J 6 HOH A 19 619 112 HOH HOH . J 6 HOH A 20 620 77 HOH HOH . J 6 HOH A 21 621 133 HOH HOH . J 6 HOH A 22 622 49 HOH HOH . J 6 HOH A 23 623 139 HOH HOH . J 6 HOH A 24 624 38 HOH HOH . J 6 HOH A 25 625 37 HOH HOH . J 6 HOH A 26 626 121 HOH HOH . J 6 HOH A 27 627 124 HOH HOH . J 6 HOH A 28 628 111 HOH HOH . J 6 HOH A 29 629 94 HOH HOH . J 6 HOH A 30 630 3 HOH HOH . J 6 HOH A 31 631 98 HOH HOH . J 6 HOH A 32 632 33 HOH HOH . J 6 HOH A 33 633 30 HOH HOH . J 6 HOH A 34 634 12 HOH HOH . J 6 HOH A 35 635 68 HOH HOH . J 6 HOH A 36 636 119 HOH HOH . J 6 HOH A 37 637 106 HOH HOH . J 6 HOH A 38 638 132 HOH HOH . J 6 HOH A 39 639 16 HOH HOH . J 6 HOH A 40 640 58 HOH HOH . J 6 HOH A 41 641 53 HOH HOH . J 6 HOH A 42 642 20 HOH HOH . J 6 HOH A 43 643 2 HOH HOH . J 6 HOH A 44 644 109 HOH HOH . J 6 HOH A 45 645 149 HOH HOH . J 6 HOH A 46 646 146 HOH HOH . J 6 HOH A 47 647 22 HOH HOH . J 6 HOH A 48 648 150 HOH HOH . J 6 HOH A 49 649 128 HOH HOH . J 6 HOH A 50 650 78 HOH HOH . J 6 HOH A 51 651 130 HOH HOH . K 6 HOH B 1 601 23 HOH HOH . K 6 HOH B 2 602 74 HOH HOH . K 6 HOH B 3 603 55 HOH HOH . K 6 HOH B 4 604 108 HOH HOH . K 6 HOH B 5 605 136 HOH HOH . K 6 HOH B 6 606 84 HOH HOH . K 6 HOH B 7 607 123 HOH HOH . K 6 HOH B 8 608 62 HOH HOH . K 6 HOH B 9 609 6 HOH HOH . K 6 HOH B 10 610 34 HOH HOH . K 6 HOH B 11 611 19 HOH HOH . K 6 HOH B 12 612 87 HOH HOH . K 6 HOH B 13 613 40 HOH HOH . K 6 HOH B 14 614 39 HOH HOH . K 6 HOH B 15 615 13 HOH HOH . K 6 HOH B 16 616 89 HOH HOH . K 6 HOH B 17 617 144 HOH HOH . K 6 HOH B 18 618 105 HOH HOH . K 6 HOH B 19 619 81 HOH HOH . K 6 HOH B 20 620 7 HOH HOH . K 6 HOH B 21 621 67 HOH HOH . K 6 HOH B 22 622 140 HOH HOH . K 6 HOH B 23 623 32 HOH HOH . K 6 HOH B 24 624 117 HOH HOH . K 6 HOH B 25 625 44 HOH HOH . K 6 HOH B 26 626 82 HOH HOH . K 6 HOH B 27 627 26 HOH HOH . K 6 HOH B 28 628 28 HOH HOH . K 6 HOH B 29 629 69 HOH HOH . K 6 HOH B 30 630 65 HOH HOH . K 6 HOH B 31 631 50 HOH HOH . K 6 HOH B 32 632 56 HOH HOH . K 6 HOH B 33 633 24 HOH HOH . K 6 HOH B 34 634 31 HOH HOH . K 6 HOH B 35 635 54 HOH HOH . K 6 HOH B 36 636 79 HOH HOH . K 6 HOH B 37 637 36 HOH HOH . K 6 HOH B 38 638 63 HOH HOH . K 6 HOH B 39 639 41 HOH HOH . K 6 HOH B 40 640 15 HOH HOH . K 6 HOH B 41 641 92 HOH HOH . K 6 HOH B 42 642 27 HOH HOH . K 6 HOH B 43 643 46 HOH HOH . K 6 HOH B 44 644 141 HOH HOH . K 6 HOH B 45 645 75 HOH HOH . K 6 HOH B 46 646 88 HOH HOH . K 6 HOH B 47 647 43 HOH HOH . K 6 HOH B 48 648 61 HOH HOH . K 6 HOH B 49 649 145 HOH HOH . K 6 HOH B 50 650 9 HOH HOH . K 6 HOH B 51 651 147 HOH HOH . K 6 HOH B 52 652 25 HOH HOH . K 6 HOH B 53 653 73 HOH HOH . K 6 HOH B 54 654 21 HOH HOH . K 6 HOH B 55 655 86 HOH HOH . K 6 HOH B 56 656 95 HOH HOH . K 6 HOH B 57 657 1 HOH HOH . K 6 HOH B 58 658 80 HOH HOH . K 6 HOH B 59 659 138 HOH HOH . K 6 HOH B 60 660 135 HOH HOH . K 6 HOH B 61 661 52 HOH HOH . K 6 HOH B 62 662 142 HOH HOH . K 6 HOH B 63 663 101 HOH HOH . K 6 HOH B 64 664 64 HOH HOH . K 6 HOH B 65 665 66 HOH HOH . K 6 HOH B 66 666 47 HOH HOH . K 6 HOH B 67 667 97 HOH HOH . K 6 HOH B 68 668 11 HOH HOH . K 6 HOH B 69 669 143 HOH HOH . K 6 HOH B 70 670 99 HOH HOH . K 6 HOH B 71 671 70 HOH HOH . K 6 HOH B 72 672 72 HOH HOH . K 6 HOH B 73 673 14 HOH HOH . K 6 HOH B 74 674 148 HOH HOH . K 6 HOH B 75 675 107 HOH HOH . K 6 HOH B 76 676 71 HOH HOH . K 6 HOH B 77 677 134 HOH HOH . K 6 HOH B 78 678 85 HOH HOH . K 6 HOH B 79 679 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -9.532 -14.435 3.106 1 50.11 ? C1 GOL 502 B 1 HETATM 2 O O1 GOL . . . I 5 -9.233 -13.781 4.337 1 48.25 ? O1 GOL 502 B 1 HETATM 3 C C2 GOL . . . I 5 -8.766 -15.734 2.972 1 49.84 ? C2 GOL 502 B 1 HETATM 4 O O2 GOL . . . I 5 -7.415 -15.457 2.608 1 48.54 ? O2 GOL 502 B 1 HETATM 5 C C3 GOL . . . I 5 -9.376 -16.697 1.973 1 52.22 ? C3 GOL 502 B 1 HETATM 6 O O3 GOL . . . I 5 -8.93 -18.037 2.177 1 50.78 ? O3 GOL 502 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #