data_8A8F # _model_server_result.job_id klOMOU--rjdZ-STZKmoAUA _model_server_result.datetime_utc '2024-10-10 04:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8A8F # _exptl.entry_id 8A8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8A8F _cell.length_a 90.23 _cell.length_b 90.23 _cell.length_c 101.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 64 A ASP 63 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A NE2 HIS 66 A HIS 65 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A OD2 ASP 92 A ASP 91 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OD2 ASP 92 A ASP 91 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 A OD1 ASN 124 A ASN 123 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 A NE2 HIS 173 A HIS 172 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 A ND1 HIS 248 A HIS 247 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 C MN MN . A MN 401 1_555 E O1 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 C MN MN . A MN 401 1_555 F O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 D MN MN . A MN 402 1_555 E O2 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 D MN MN . A MN 402 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8A8F _atom_sites.fract_transf_matrix[1][1] 0.011083 _atom_sites.fract_transf_matrix[1][2] 0.006399 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 401 407 MN MN . D 3 MN A 1 402 408 MN MN . E 4 PO4 A 1 403 409 PO4 PO4 . F 5 HOH A 1 501 83 HOH HOH . F 5 HOH A 2 502 74 HOH HOH . F 5 HOH A 3 503 62 HOH HOH . F 5 HOH A 4 504 50 HOH HOH . F 5 HOH A 5 505 54 HOH HOH . F 5 HOH A 6 506 82 HOH HOH . F 5 HOH A 7 507 111 HOH HOH . F 5 HOH A 8 508 19 HOH HOH . F 5 HOH A 9 509 119 HOH HOH . F 5 HOH A 10 510 13 HOH HOH . F 5 HOH A 11 511 22 HOH HOH . F 5 HOH A 12 512 96 HOH HOH . F 5 HOH A 13 513 56 HOH HOH . F 5 HOH A 14 514 12 HOH HOH . F 5 HOH A 15 515 36 HOH HOH . F 5 HOH A 16 516 79 HOH HOH . F 5 HOH A 17 517 116 HOH HOH . F 5 HOH A 18 518 58 HOH HOH . F 5 HOH A 19 519 7 HOH HOH . F 5 HOH A 20 520 64 HOH HOH . F 5 HOH A 21 521 84 HOH HOH . F 5 HOH A 22 522 8 HOH HOH . F 5 HOH A 23 523 49 HOH HOH . F 5 HOH A 24 524 27 HOH HOH . F 5 HOH A 25 525 15 HOH HOH . F 5 HOH A 26 526 48 HOH HOH . F 5 HOH A 27 527 101 HOH HOH . F 5 HOH A 28 528 76 HOH HOH . F 5 HOH A 29 529 98 HOH HOH . F 5 HOH A 30 530 72 HOH HOH . F 5 HOH A 31 531 60 HOH HOH . F 5 HOH A 32 532 33 HOH HOH . F 5 HOH A 33 533 97 HOH HOH . F 5 HOH A 34 534 3 HOH HOH . F 5 HOH A 35 535 17 HOH HOH . F 5 HOH A 36 536 38 HOH HOH . F 5 HOH A 37 537 10 HOH HOH . F 5 HOH A 38 538 34 HOH HOH . F 5 HOH A 39 539 37 HOH HOH . F 5 HOH A 40 540 108 HOH HOH . F 5 HOH A 41 541 40 HOH HOH . F 5 HOH A 42 542 57 HOH HOH . F 5 HOH A 43 543 87 HOH HOH . F 5 HOH A 44 544 26 HOH HOH . F 5 HOH A 45 545 21 HOH HOH . F 5 HOH A 46 546 117 HOH HOH . F 5 HOH A 47 547 47 HOH HOH . F 5 HOH A 48 548 104 HOH HOH . F 5 HOH A 49 549 32 HOH HOH . F 5 HOH A 50 550 39 HOH HOH . F 5 HOH A 51 551 23 HOH HOH . F 5 HOH A 52 552 6 HOH HOH . F 5 HOH A 53 553 107 HOH HOH . F 5 HOH A 54 554 52 HOH HOH . F 5 HOH A 55 555 2 HOH HOH . F 5 HOH A 56 556 53 HOH HOH . F 5 HOH A 57 557 65 HOH HOH . F 5 HOH A 58 558 16 HOH HOH . F 5 HOH A 59 559 113 HOH HOH . F 5 HOH A 60 560 25 HOH HOH . F 5 HOH A 61 561 18 HOH HOH . F 5 HOH A 62 562 31 HOH HOH . F 5 HOH A 63 563 11 HOH HOH . F 5 HOH A 64 564 41 HOH HOH . F 5 HOH A 65 565 81 HOH HOH . F 5 HOH A 66 566 75 HOH HOH . F 5 HOH A 67 567 66 HOH HOH . F 5 HOH A 68 568 78 HOH HOH . F 5 HOH A 69 569 1 HOH HOH . F 5 HOH A 70 570 61 HOH HOH . F 5 HOH A 71 571 5 HOH HOH . F 5 HOH A 72 572 112 HOH HOH . F 5 HOH A 73 573 35 HOH HOH . F 5 HOH A 74 574 85 HOH HOH . F 5 HOH A 75 575 46 HOH HOH . F 5 HOH A 76 576 121 HOH HOH . F 5 HOH A 77 577 9 HOH HOH . F 5 HOH A 78 578 71 HOH HOH . F 5 HOH A 79 579 4 HOH HOH . F 5 HOH A 80 580 69 HOH HOH . F 5 HOH A 81 581 24 HOH HOH . F 5 HOH A 82 582 93 HOH HOH . F 5 HOH A 83 583 28 HOH HOH . F 5 HOH A 84 584 99 HOH HOH . F 5 HOH A 85 585 106 HOH HOH . F 5 HOH A 86 586 89 HOH HOH . F 5 HOH A 87 587 14 HOH HOH . F 5 HOH A 88 588 63 HOH HOH . F 5 HOH A 89 589 77 HOH HOH . F 5 HOH A 90 590 115 HOH HOH . F 5 HOH A 91 591 30 HOH HOH . F 5 HOH A 92 592 20 HOH HOH . F 5 HOH A 93 593 110 HOH HOH . F 5 HOH A 94 594 92 HOH HOH . F 5 HOH A 95 595 42 HOH HOH . F 5 HOH A 96 596 59 HOH HOH . F 5 HOH A 97 597 91 HOH HOH . F 5 HOH A 98 598 90 HOH HOH . F 5 HOH A 99 599 45 HOH HOH . F 5 HOH A 100 600 114 HOH HOH . F 5 HOH A 101 601 43 HOH HOH . F 5 HOH A 102 602 88 HOH HOH . F 5 HOH A 103 603 105 HOH HOH . F 5 HOH A 104 604 118 HOH HOH . F 5 HOH A 105 605 102 HOH HOH . F 5 HOH A 106 606 51 HOH HOH . F 5 HOH A 107 607 55 HOH HOH . F 5 HOH A 108 608 70 HOH HOH . F 5 HOH A 109 609 80 HOH HOH . F 5 HOH A 110 610 109 HOH HOH . F 5 HOH A 111 611 120 HOH HOH . F 5 HOH A 112 612 95 HOH HOH . F 5 HOH A 113 613 103 HOH HOH . F 5 HOH A 114 614 44 HOH HOH . F 5 HOH A 115 615 68 HOH HOH . F 5 HOH A 116 616 100 HOH HOH . G 5 HOH B 1 501 29 HOH HOH . G 5 HOH B 2 502 94 HOH HOH . G 5 HOH B 3 503 67 HOH HOH . G 5 HOH B 4 504 86 HOH HOH . G 5 HOH B 5 505 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -32.215 _atom_site.Cartn_y 0.463 _atom_site.Cartn_z 20.206 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 38.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #