data_8A8K
#
_model_server_result.job_id            sm_WedhHVBVxmZC7ymxvew 
_model_server_result.datetime_utc      '2024-10-19 12:37:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":401}' 
#
_entry.id    8A8K 
#
_exptl.entry_id    8A8K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A8K 
_cell.length_a            174.054 
_cell.length_b            174.054 
_cell.length_c            183.803 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A8K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J,K,L 2 1 
C,M,N 3 1 
D,O,P 4 1 
E,Q,R,S 5 1 
F,T,U,V 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OD1 ASP 77 D ASP 57 1_555 P MN MN . D MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc2 D OD2 ASP 77 D ASP 57 1_555 P MN MN . D MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc3 E OD2 ASP 77 E ASP 57 1_555 S MN MN . E MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc4 E OD1 ASP 147 E ASP 127 1_555 S MN MN . E MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc5 F OD1 ASP 147 F ASP 127 1_555 V MN MN . F MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     8A8K 
_atom_sites.fract_transf_matrix[1][1]    0.005745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 AMP A 1 401 401 AMP AMP . 
H 3 GOL A 1 402 501 GOL GOL . 
I 2 AMP B 1 401 401 AMP AMP . 
J 3 GOL B 1 402 501 GOL GOL . 
K 3 GOL B 1 403 601 GOL GOL . 
L 3 GOL B 1 404 701 GOL GOL . 
M 2 AMP C 1 401 401 AMP AMP . 
N 3 GOL C 1 402 501 GOL GOL . 
O 2 AMP D 1 401 401 AMP AMP . 
P 4 MN D 1 402 3 MN MN . 
Q 2 AMP E 1 401 401 AMP AMP . 
R 3 GOL E 1 402 501 GOL GOL . 
S 4 MN E 1 403 1 MN MN . 
T 3 GOL F 1 501 501 GOL GOL . 
U 2 AMP F 1 502 601 AMP AMP . 
V 4 MN F 1 503 2 MN MN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . Q 2 -29.629 83.236 -18.42 1 85.88 ? P AMP 401 E 1 
HETATM 2 O O1P AMP . . . Q 2 -29.086 82.349 -19.513 1 101.41 -1 O1P AMP 401 E 1 
HETATM 3 O O2P AMP . . . Q 2 -31.121 83.371 -18.612 1 89.23 ? O2P AMP 401 E 1 
HETATM 4 O O3P AMP . . . Q 2 -28.973 84.598 -18.512 1 90.36 -1 O3P AMP 401 E 1 
HETATM 5 O O5' AMP . . . Q 2 -29.302 82.569 -16.945 1 83.26 ? O5' AMP 401 E 1 
HETATM 6 C C5' AMP . . . Q 2 -30.019 83.02 -15.831 1 87.75 ? C5' AMP 401 E 1 
HETATM 7 C C4' AMP . . . Q 2 -29.089 83.41 -14.696 1 88.43 ? C4' AMP 401 E 1 
HETATM 8 O O4' AMP . . . Q 2 -28.45 82.104 -13.99 1 86.51 ? O4' AMP 401 E 1 
HETATM 9 C C3' AMP . . . Q 2 -28.075 84.091 -15.153 1 89.74 ? C3' AMP 401 E 1 
HETATM 10 O O3' AMP . . . Q 2 -28.366 85.557 -15.083 1 92.93 ? O3' AMP 401 E 1 
HETATM 11 C C2' AMP . . . Q 2 -26.886 83.719 -14.238 1 87.1 ? C2' AMP 401 E 1 
HETATM 12 O O2' AMP . . . Q 2 -26.525 84.791 -13.481 1 87.03 ? O2' AMP 401 E 1 
HETATM 13 C C1' AMP . . . Q 2 -27.394 82.547 -13.36 1 85.98 ? C1' AMP 401 E 1 
HETATM 14 N N9 AMP . . . Q 2 -26.387 81.464 -13.226 1 79.64 ? N9 AMP 401 E 1 
HETATM 15 C C8 AMP . . . Q 2 -26.121 80.515 -14.149 1 80.62 ? C8 AMP 401 E 1 
HETATM 16 N N7 AMP . . . Q 2 -25.149 79.71 -13.666 1 80.35 ? N7 AMP 401 E 1 
HETATM 17 C C5 AMP . . . Q 2 -24.817 80.148 -12.457 1 79.69 ? C5 AMP 401 E 1 
HETATM 18 C C6 AMP . . . Q 2 -23.794 79.645 -11.432 1 75.84 ? C6 AMP 401 E 1 
HETATM 19 N N6 AMP . . . Q 2 -22.98 78.485 -11.741 1 78.4 ? N6 AMP 401 E 1 
HETATM 20 N N1 AMP . . . Q 2 -23.635 80.317 -10.185 1 76.54 ? N1 AMP 401 E 1 
HETATM 21 C C2 AMP . . . Q 2 -24.443 81.472 -9.891 1 80.89 ? C2 AMP 401 E 1 
HETATM 22 N N3 AMP . . . Q 2 -25.422 81.946 -10.872 1 84.17 ? N3 AMP 401 E 1 
HETATM 23 C C4 AMP . . . Q 2 -25.586 81.242 -12.181 1 80.79 ? C4 AMP 401 E 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#