data_8A8M # _model_server_result.job_id 3QWOtgxQa4CLigONh-oKpw _model_server_result.datetime_utc '2024-10-11 01:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 8A8M # _exptl.entry_id 8A8M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 425.228 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A8M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 189 A ASP 168 1_555 E MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc2 C O1B AP2 . A AP2 900 1_555 E MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc3 C O3B AP2 . A AP2 900 1_555 E MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc4 B OD1 ASP 201 B ASP 197 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc5 F O2A AP2 . B AP2 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C11 H17 N5 O9 P2' _chem_comp.formula_weight 425.228 _chem_comp.id AP2 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AP2 doub 13 n n PB O2B AP2 sing 14 n n PB O3B AP2 sing 15 n n PB C3A AP2 sing 16 n n O2B HOB2 AP2 sing 17 n n O3B HOB3 AP2 sing 18 n n C3A PA AP2 sing 19 n n C3A H3A1 AP2 sing 20 n n C3A H3A2 AP2 sing 21 n n PA O1A AP2 doub 22 n n PA O2A AP2 sing 23 n n PA O5' AP2 sing 24 n n O2A HOA2 AP2 sing 25 n n O5' C5' AP2 sing 26 n n C5' C4' AP2 sing 27 n n C5' "H5'1" AP2 sing 28 n n C5' "H5'2" AP2 sing 29 n n C4' O4' AP2 sing 30 n n C4' C3' AP2 sing 31 n n C4' H4' AP2 sing 32 n n O4' C1' AP2 sing 33 n n C3' O3' AP2 sing 34 n n C3' C2' AP2 sing 35 n n C3' H3' AP2 sing 36 n n O3' HO3' AP2 sing 37 n n C2' O2' AP2 sing 38 n n C2' C1' AP2 sing 39 n n C2' H2' AP2 sing 40 n n O2' HO2' AP2 sing 41 n n C1' N9 AP2 sing 42 n n C1' H1' AP2 sing 43 n n N9 C8 AP2 sing 44 n y N9 C4 AP2 sing 45 n y C8 N7 AP2 doub 46 n y C8 H8 AP2 sing 47 n n N7 C5 AP2 sing 48 n y C5 C6 AP2 sing 49 n y C5 C4 AP2 doub 50 n y C6 N6 AP2 sing 51 n n C6 N1 AP2 doub 52 n y N6 HN61 AP2 sing 53 n n N6 HN62 AP2 sing 54 n n N1 C2 AP2 sing 55 n y C2 N3 AP2 doub 56 n y C2 H2 AP2 sing 57 n n N3 C4 AP2 sing 58 n y # _atom_sites.entry_id 8A8M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AP2 A 1 900 900 AP2 AP2 . D 4 MG A 1 901 901 MG MG . E 4 MG A 1 902 902 MG MG . F 3 AP2 B 1 401 903 AP2 AP2 . G 4 MG B 1 402 904 MG MG . H 4 MG B 1 403 905 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AP2 . . . C 3 129.171 133.73 112.405 1 0 ? PB AP2 900 A 1 HETATM 2 O O1B AP2 . . . C 3 130.521 133.856 111.696 1 0 ? O1B AP2 900 A 1 HETATM 3 O O2B AP2 . . . C 3 128.527 135.087 112.723 1 0 ? O2B AP2 900 A 1 HETATM 4 O O3B AP2 . . . C 3 129.173 132.772 113.602 1 0 ? O3B AP2 900 A 1 HETATM 5 C C3A AP2 . . . C 3 128 132.981 111.159 1 0 ? C3A AP2 900 A 1 HETATM 6 P PA AP2 . . . C 3 127.534 134.093 109.82 1 0 ? PA AP2 900 A 1 HETATM 7 O O1A AP2 . . . C 3 126.951 133.358 108.633 1 0 ? O1A AP2 900 A 1 HETATM 8 O O2A AP2 . . . C 3 128.585 135.14 109.578 1 0 ? O2A AP2 900 A 1 HETATM 9 O O5' AP2 . . . C 3 126.272 134.958 110.532 1 0 ? O5' AP2 900 A 1 HETATM 10 C C5' AP2 . . . C 3 125.48 134.45 111.563 1 0 ? C5' AP2 900 A 1 HETATM 11 C C4' AP2 . . . C 3 124.002 134.439 111.21 1 0 ? C4' AP2 900 A 1 HETATM 12 O O4' AP2 . . . C 3 123.572 135.704 110.69 1 0 ? O4' AP2 900 A 1 HETATM 13 C C3' AP2 . . . C 3 123.706 133.418 110.124 1 0 ? C3' AP2 900 A 1 HETATM 14 O O3' AP2 . . . C 3 123.334 132.216 110.75 1 0 ? O3' AP2 900 A 1 HETATM 15 C C2' AP2 . . . C 3 122.512 134.05 109.405 1 0 ? C2' AP2 900 A 1 HETATM 16 O O2' AP2 . . . C 3 121.262 133.749 109.948 1 0 ? O2' AP2 900 A 1 HETATM 17 C C1' AP2 . . . C 3 122.799 135.546 109.54 1 0 ? C1' AP2 900 A 1 HETATM 18 N N9 AP2 . . . C 3 123.488 136.129 108.413 1 0 ? N9 AP2 900 A 1 HETATM 19 C C8 AP2 . . . C 3 124.751 136.667 108.395 1 0 ? C8 AP2 900 A 1 HETATM 20 N N7 AP2 . . . C 3 125.093 137.119 107.222 1 0 ? N7 AP2 900 A 1 HETATM 21 C C5 AP2 . . . C 3 124.007 136.872 106.424 1 0 ? C5 AP2 900 A 1 HETATM 22 C C6 AP2 . . . C 3 123.742 137.117 105.065 1 0 ? C6 AP2 900 A 1 HETATM 23 N N6 AP2 . . . C 3 124.628 137.703 104.252 1 0 ? N6 AP2 900 A 1 HETATM 24 N N1 AP2 . . . C 3 122.553 136.747 104.576 1 0 ? N1 AP2 900 A 1 HETATM 25 C C2 AP2 . . . C 3 121.675 136.164 105.39 1 0 ? C2 AP2 900 A 1 HETATM 26 N N3 AP2 . . . C 3 121.805 135.882 106.675 1 0 ? N3 AP2 900 A 1 HETATM 27 C C4 AP2 . . . C 3 122.994 136.257 107.147 1 0 ? C4 AP2 900 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #