data_8A9E # _model_server_result.job_id ovsuVSdhYWuQI98s74qLXg _model_server_result.datetime_utc '2024-11-16 14:50:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8A9E # _exptl.entry_id 8A9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A9E _cell.length_a 77.75 _cell.length_b 77.75 _cell.length_c 38.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 B GD GD . AAA GD 201 1_555 E N1 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc2 B GD GD . AAA GD 201 1_555 E N2 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 B GD GD . AAA GD 201 1_555 E N3 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 B GD GD . AAA GD 201 1_555 E O5 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 B GD GD . AAA GD 201 1_555 E O1 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 B GD GD . AAA GD 201 1_555 E O3 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 B GD GD . AAA GD 201 1_555 E N4 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 B GD GD . AAA GD 201 1_555 E O7 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 C GD GD . AAA GD 202 1_555 D O1 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 C GD GD . AAA GD 202 1_555 D N3 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc11 C GD GD . AAA GD 202 1_555 D N4 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc12 C GD GD . AAA GD 202 1_555 D O3 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C GD GD . AAA GD 202 1_555 D O5 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc14 C GD GD . AAA GD 202 1_555 D O7 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 C GD GD . AAA GD 202 1_555 D N2 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc16 C GD GD . AAA GD 202 1_555 D N1 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8A9E _atom_sites.fract_transf_matrix[1][1] 0.012862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD AAA 1 201 201 GD GD . C 2 GD AAA 1 202 202 GD GD . D 3 DO3 AAA 1 203 203 DO3 DO3 . E 3 DO3 AAA 1 204 204 DO3 DO3 . F 4 HOH AAA 1 301 301 HOH HOH . F 4 HOH AAA 2 302 302 HOH HOH . F 4 HOH AAA 3 303 303 HOH HOH . F 4 HOH AAA 4 304 304 HOH HOH . F 4 HOH AAA 5 305 305 HOH HOH . F 4 HOH AAA 6 306 306 HOH HOH . F 4 HOH AAA 7 307 307 HOH HOH . F 4 HOH AAA 8 308 308 HOH HOH . F 4 HOH AAA 9 309 309 HOH HOH . F 4 HOH AAA 10 310 310 HOH HOH . F 4 HOH AAA 11 311 311 HOH HOH . F 4 HOH AAA 12 312 312 HOH HOH . F 4 HOH AAA 13 313 313 HOH HOH . F 4 HOH AAA 14 314 314 HOH HOH . F 4 HOH AAA 15 315 315 HOH HOH . F 4 HOH AAA 16 316 316 HOH HOH . F 4 HOH AAA 17 317 317 HOH HOH . F 4 HOH AAA 18 318 318 HOH HOH . F 4 HOH AAA 19 319 319 HOH HOH . F 4 HOH AAA 20 320 320 HOH HOH . F 4 HOH AAA 21 321 321 HOH HOH . F 4 HOH AAA 22 322 322 HOH HOH . F 4 HOH AAA 23 323 323 HOH HOH . F 4 HOH AAA 24 324 324 HOH HOH . F 4 HOH AAA 25 325 325 HOH HOH . F 4 HOH AAA 26 326 326 HOH HOH . F 4 HOH AAA 27 327 327 HOH HOH . F 4 HOH AAA 28 328 328 HOH HOH . F 4 HOH AAA 29 329 329 HOH HOH . F 4 HOH AAA 30 330 330 HOH HOH . F 4 HOH AAA 31 331 331 HOH HOH . F 4 HOH AAA 32 332 332 HOH HOH . F 4 HOH AAA 33 333 333 HOH HOH . F 4 HOH AAA 34 334 334 HOH HOH . F 4 HOH AAA 35 335 335 HOH HOH . F 4 HOH AAA 36 336 336 HOH HOH . F 4 HOH AAA 37 337 337 HOH HOH . F 4 HOH AAA 38 338 338 HOH HOH . F 4 HOH AAA 39 339 339 HOH HOH . F 4 HOH AAA 40 340 340 HOH HOH . F 4 HOH AAA 41 341 341 HOH HOH . F 4 HOH AAA 42 342 342 HOH HOH . F 4 HOH AAA 43 343 343 HOH HOH . F 4 HOH AAA 44 344 344 HOH HOH . F 4 HOH AAA 45 345 345 HOH HOH . F 4 HOH AAA 46 346 346 HOH HOH . F 4 HOH AAA 47 347 347 HOH HOH . F 4 HOH AAA 48 348 348 HOH HOH . F 4 HOH AAA 49 349 349 HOH HOH . F 4 HOH AAA 50 350 350 HOH HOH . F 4 HOH AAA 51 351 351 HOH HOH . F 4 HOH AAA 52 352 352 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.623 _atom_site.Cartn_y 10.837 _atom_site.Cartn_z 26.698 _atom_site.occupancy 0.53 _atom_site.B_iso_or_equiv 13.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 201 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #