data_8A9E # _model_server_result.job_id Hm3kpcvLt2nNsvXdVH5iPA _model_server_result.datetime_utc '2024-11-16 14:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8A9E # _exptl.entry_id 8A9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.459 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A9E _cell.length_a 77.75 _cell.length_b 77.75 _cell.length_c 38.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 B GD GD . AAA GD 201 1_555 E N1 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc2 B GD GD . AAA GD 201 1_555 E N2 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 B GD GD . AAA GD 201 1_555 E N3 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 B GD GD . AAA GD 201 1_555 E O5 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 B GD GD . AAA GD 201 1_555 E O1 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 B GD GD . AAA GD 201 1_555 E O3 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 B GD GD . AAA GD 201 1_555 E N4 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 B GD GD . AAA GD 201 1_555 E O7 DO3 . AAA DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 C GD GD . AAA GD 202 1_555 D O1 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 C GD GD . AAA GD 202 1_555 D N3 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc11 C GD GD . AAA GD 202 1_555 D N4 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc12 C GD GD . AAA GD 202 1_555 D O3 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C GD GD . AAA GD 202 1_555 D O5 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc14 C GD GD . AAA GD 202 1_555 D O7 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 C GD GD . AAA GD 202 1_555 D N2 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc16 C GD GD . AAA GD 202 1_555 D N1 DO3 . AAA DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? # _chem_comp.formula 'C17 H32 N4 O7' _chem_comp.formula_weight 404.459 _chem_comp.id DO3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DO3 sing 83 n n N1 C8 DO3 sing 84 n n N1 C10 DO3 sing 85 n n N2 C2 DO3 sing 86 n n N2 C3 DO3 sing 87 n n N2 C12 DO3 sing 88 n n N3 C4 DO3 sing 89 n n N3 C5 DO3 sing 90 n n N3 C14 DO3 sing 91 n n N4 C6 DO3 sing 92 n n N4 C7 DO3 sing 93 n n N4 C16 DO3 sing 94 n n O1 C9 DO3 sing 95 n n O1 HO1 DO3 sing 96 n n O3 C11 DO3 sing 97 n n O3 HO3 DO3 sing 98 n n O5 C13 DO3 sing 99 n n O5 HO5 DO3 sing 100 n n O7 C15 DO3 sing 101 n n O7 HO7 DO3 sing 102 n n C1 C2 DO3 sing 103 n n C1 HC11 DO3 sing 104 n n C1 HC12 DO3 sing 105 n n C2 HC21 DO3 sing 106 n n C2 HC22 DO3 sing 107 n n C3 C4 DO3 sing 108 n n C3 HC31 DO3 sing 109 n n C3 HC32 DO3 sing 110 n n C4 HC41 DO3 sing 111 n n C4 HC42 DO3 sing 112 n n C5 C6 DO3 sing 113 n n C5 HC51 DO3 sing 114 n n C5 HC52 DO3 sing 115 n n C6 HC61 DO3 sing 116 n n C6 HC62 DO3 sing 117 n n C7 C8 DO3 sing 118 n n C7 HC71 DO3 sing 119 n n C7 HC72 DO3 sing 120 n n C8 HC81 DO3 sing 121 n n C8 HC82 DO3 sing 122 n n C9 C10 DO3 sing 123 n n C9 O2 DO3 doub 124 n n C10 H101 DO3 sing 125 n n C10 H102 DO3 sing 126 n n C11 C12 DO3 sing 127 n n C11 O4 DO3 doub 128 n n C12 H121 DO3 sing 129 n n C12 H122 DO3 sing 130 n n C13 C14 DO3 sing 131 n n C13 O6 DO3 doub 132 n n C14 H141 DO3 sing 133 n n C14 H142 DO3 sing 134 n n C15 C16 DO3 sing 135 n n C15 C17 DO3 sing 136 n n C15 HA DO3 sing 137 n n C16 H161 DO3 sing 138 n n C16 H162 DO3 sing 139 n n C17 H171 DO3 sing 140 n n C17 H172 DO3 sing 141 n n C17 H173 DO3 sing 142 n n # _atom_sites.entry_id 8A9E _atom_sites.fract_transf_matrix[1][1] 0.012862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD AAA 1 201 201 GD GD . C 2 GD AAA 1 202 202 GD GD . D 3 DO3 AAA 1 203 203 DO3 DO3 . E 3 DO3 AAA 1 204 204 DO3 DO3 . F 4 HOH AAA 1 301 301 HOH HOH . F 4 HOH AAA 2 302 302 HOH HOH . F 4 HOH AAA 3 303 303 HOH HOH . F 4 HOH AAA 4 304 304 HOH HOH . F 4 HOH AAA 5 305 305 HOH HOH . F 4 HOH AAA 6 306 306 HOH HOH . F 4 HOH AAA 7 307 307 HOH HOH . F 4 HOH AAA 8 308 308 HOH HOH . F 4 HOH AAA 9 309 309 HOH HOH . F 4 HOH AAA 10 310 310 HOH HOH . F 4 HOH AAA 11 311 311 HOH HOH . F 4 HOH AAA 12 312 312 HOH HOH . F 4 HOH AAA 13 313 313 HOH HOH . F 4 HOH AAA 14 314 314 HOH HOH . F 4 HOH AAA 15 315 315 HOH HOH . F 4 HOH AAA 16 316 316 HOH HOH . F 4 HOH AAA 17 317 317 HOH HOH . F 4 HOH AAA 18 318 318 HOH HOH . F 4 HOH AAA 19 319 319 HOH HOH . F 4 HOH AAA 20 320 320 HOH HOH . F 4 HOH AAA 21 321 321 HOH HOH . F 4 HOH AAA 22 322 322 HOH HOH . F 4 HOH AAA 23 323 323 HOH HOH . F 4 HOH AAA 24 324 324 HOH HOH . F 4 HOH AAA 25 325 325 HOH HOH . F 4 HOH AAA 26 326 326 HOH HOH . F 4 HOH AAA 27 327 327 HOH HOH . F 4 HOH AAA 28 328 328 HOH HOH . F 4 HOH AAA 29 329 329 HOH HOH . F 4 HOH AAA 30 330 330 HOH HOH . F 4 HOH AAA 31 331 331 HOH HOH . F 4 HOH AAA 32 332 332 HOH HOH . F 4 HOH AAA 33 333 333 HOH HOH . F 4 HOH AAA 34 334 334 HOH HOH . F 4 HOH AAA 35 335 335 HOH HOH . F 4 HOH AAA 36 336 336 HOH HOH . F 4 HOH AAA 37 337 337 HOH HOH . F 4 HOH AAA 38 338 338 HOH HOH . F 4 HOH AAA 39 339 339 HOH HOH . F 4 HOH AAA 40 340 340 HOH HOH . F 4 HOH AAA 41 341 341 HOH HOH . F 4 HOH AAA 42 342 342 HOH HOH . F 4 HOH AAA 43 343 343 HOH HOH . F 4 HOH AAA 44 344 344 HOH HOH . F 4 HOH AAA 45 345 345 HOH HOH . F 4 HOH AAA 46 346 346 HOH HOH . F 4 HOH AAA 47 347 347 HOH HOH . F 4 HOH AAA 48 348 348 HOH HOH . F 4 HOH AAA 49 349 349 HOH HOH . F 4 HOH AAA 50 350 350 HOH HOH . F 4 HOH AAA 51 351 351 HOH HOH . F 4 HOH AAA 52 352 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DO3 . . . E 3 35.486 9.825 27.718 0.81 22.67 ? N1 DO3 204 AAA 1 HETATM 2 N N2 DO3 . . . E 3 35.917 10.642 24.828 0.81 23.39 ? N2 DO3 204 AAA 1 HETATM 3 N N3 DO3 . . . E 3 38.43 8.99 24.92 0.81 26.99 ? N3 DO3 204 AAA 1 HETATM 4 N N4 DO3 . . . E 3 37.871 8.263 27.805 0.81 30.15 ? N4 DO3 204 AAA 1 HETATM 5 O O1 DO3 . . . E 3 36.23 12.492 27.517 0.81 25.27 ? O1 DO3 204 AAA 1 HETATM 6 O O3 DO3 . . . E 3 37.887 12.415 25 0.81 23.01 ? O3 DO3 204 AAA 1 HETATM 7 O O5 DO3 . . . E 3 40.005 10.683 26.371 0.81 25.11 ? O5 DO3 204 AAA 1 HETATM 8 O O7 DO3 . . . E 3 38.46 10.639 28.945 0.81 21.19 ? O7 DO3 204 AAA 1 HETATM 9 C C1 DO3 . . . E 3 34.392 10.015 26.742 0.81 24.7 ? C1 DO3 204 AAA 1 HETATM 10 C C2 DO3 . . . E 3 34.761 9.848 25.279 0.81 23.97 ? C2 DO3 204 AAA 1 HETATM 11 C C3 DO3 . . . E 3 36.528 9.994 23.654 0.81 26.72 ? C3 DO3 204 AAA 1 HETATM 12 C C4 DO3 . . . E 3 37.306 8.75 23.998 0.81 27.31 ? C4 DO3 204 AAA 1 HETATM 13 C C5 DO3 . . . E 3 38.783 7.681 25.504 0.81 27.41 ? C5 DO3 204 AAA 1 HETATM 14 C C6 DO3 . . . E 3 38.942 7.635 27.002 0.81 30.33 ? C6 DO3 204 AAA 1 HETATM 15 C C7 DO3 . . . E 3 36.579 7.609 27.612 0.81 29.51 ? C7 DO3 204 AAA 1 HETATM 16 C C8 DO3 . . . E 3 35.445 8.424 28.16 0.81 28.07 ? C8 DO3 204 AAA 1 HETATM 17 C C9 DO3 . . . E 3 35.414 12.223 28.408 0.81 24.66 ? C9 DO3 204 AAA 1 HETATM 18 C C10 DO3 . . . E 3 35.317 10.756 28.824 0.81 26.61 ? C10 DO3 204 AAA 1 HETATM 19 C C11 DO3 . . . E 3 36.852 12.914 24.517 0.81 23.68 ? C11 DO3 204 AAA 1 HETATM 20 C C12 DO3 . . . E 3 35.592 12.052 24.559 0.81 23.38 ? C12 DO3 204 AAA 1 HETATM 21 C C13 DO3 . . . E 3 40.434 10.491 25.186 0.81 29.16 ? C13 DO3 204 AAA 1 HETATM 22 C C14 DO3 . . . E 3 39.565 9.651 24.256 0.81 28.07 ? C14 DO3 204 AAA 1 HETATM 23 C C15 DO3 . . . E 3 38.462 9.591 29.899 0.81 24.84 ? C15 DO3 204 AAA 1 HETATM 24 C C16 DO3 . . . E 3 38.245 8.242 29.229 0.81 29.58 ? C16 DO3 204 AAA 1 HETATM 25 C C17 DO3 . . . E 3 39.734 9.608 30.721 0.81 22.38 ? C17 DO3 204 AAA 1 HETATM 26 O O2 DO3 . . . E 3 34.669 13.051 28.984 0.81 28.6 ? O2 DO3 204 AAA 1 HETATM 27 O O4 DO3 . . . E 3 36.767 14.015 23.957 0.81 25.14 ? O4 DO3 204 AAA 1 HETATM 28 O O6 DO3 . . . E 3 41.469 11.005 24.668 0.81 31.56 ? O6 DO3 204 AAA 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #