data_8A9V # _model_server_result.job_id 4XtCqwZjKULSHhPX5MzjEQ _model_server_result.datetime_utc '2024-10-20 05:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8A9V # _exptl.entry_id 8A9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 676.662 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-azanyl-ethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A9V _cell.length_a 63.051 _cell.length_b 75.085 _cell.length_c 118.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.051 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.051 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H32 N12 O9 S' _chem_comp.formula_weight 676.662 _chem_comp.id LAW _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-azanyl-ethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C24 LAW sing 193 n n N8 C21 LAW sing 194 n y N8 C20 LAW doub 195 n y C24 C21 LAW doub 196 n y C24 N10 LAW sing 197 n y C21 C22 LAW sing 198 n y C20 N7 LAW sing 199 n y O7 C18 LAW sing 200 n n C18 C19 LAW sing 201 n n C18 C17 LAW sing 202 n n N10 C23 LAW doub 203 n y O8 C19 LAW sing 204 n n C22 N7 LAW sing 205 n y C22 N9 LAW doub 206 n y N7 C17 LAW sing 207 n n C19 C16 LAW sing 208 n n C23 N9 LAW sing 209 n y C17 O6 LAW sing 210 n n O6 C16 LAW sing 211 n n C16 C15 LAW sing 212 n n C15 O5 LAW sing 213 n n O S LAW doub 214 n n N6 C11 LAW sing 215 n n C1 S LAW sing 216 n n C1 C LAW sing 217 n n C11 N5 LAW doub 218 n y C11 C8 LAW sing 219 n y O5 C14 LAW sing 220 n n N5 C10 LAW sing 221 n y S O1 LAW doub 222 n n S N1 LAW sing 223 n n C N LAW sing 224 n n N3 C8 LAW sing 225 n y N3 C7 LAW doub 226 n y C8 C9 LAW doub 227 n y C10 N4 LAW doub 228 n y C14 C13 LAW sing 229 n n C7 C12 LAW sing 230 n n C7 N2 LAW sing 231 n y C13 C12 LAW trip 232 n n C2 N1 LAW sing 233 n n C2 C3 LAW sing 234 n n C9 N4 LAW sing 235 n y C9 N2 LAW sing 236 n y O2 C3 LAW sing 237 n n O2 C4 LAW sing 238 n n N2 C4 LAW sing 239 n n C3 C6 LAW sing 240 n n C4 C5 LAW sing 241 n n C5 C6 LAW sing 242 n n C5 O3 LAW sing 243 n n C6 O4 LAW sing 244 n n N1 H1 LAW sing 245 n n C1 H2 LAW sing 246 n n C1 H3 LAW sing 247 n n C5 H4 LAW sing 248 n n C6 H5 LAW sing 249 n n C4 H6 LAW sing 250 n n O4 H7 LAW sing 251 n n C3 H8 LAW sing 252 n n O3 H9 LAW sing 253 n n C2 H10 LAW sing 254 n n C2 H11 LAW sing 255 n n N H12 LAW sing 256 n n N H13 LAW sing 257 n n C H15 LAW sing 258 n n C H16 LAW sing 259 n n C10 H17 LAW sing 260 n n C14 H18 LAW sing 261 n n C14 H19 LAW sing 262 n n C15 H20 LAW sing 263 n n C15 H21 LAW sing 264 n n C16 H22 LAW sing 265 n n C17 H23 LAW sing 266 n n C18 H24 LAW sing 267 n n C19 H25 LAW sing 268 n n C20 H26 LAW sing 269 n n C23 H27 LAW sing 270 n n N11 H28 LAW sing 271 n n N11 H29 LAW sing 272 n n N6 H30 LAW sing 273 n n N6 H31 LAW sing 274 n n O7 H32 LAW sing 275 n n O8 H33 LAW sing 276 n n # _atom_sites.entry_id 8A9V _atom_sites.fract_transf_matrix[1][1] 0.01586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 LAW A 1 302 1 LAW XXX . D 4 HOH A 1 401 45 HOH HOH . D 4 HOH A 2 402 76 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 33 HOH HOH . D 4 HOH A 5 405 10 HOH HOH . D 4 HOH A 6 406 87 HOH HOH . D 4 HOH A 7 407 6 HOH HOH . D 4 HOH A 8 408 58 HOH HOH . D 4 HOH A 9 409 36 HOH HOH . D 4 HOH A 10 410 18 HOH HOH . D 4 HOH A 11 411 52 HOH HOH . D 4 HOH A 12 412 60 HOH HOH . D 4 HOH A 13 413 81 HOH HOH . D 4 HOH A 14 414 103 HOH HOH . D 4 HOH A 15 415 1 HOH HOH . D 4 HOH A 16 416 46 HOH HOH . D 4 HOH A 17 417 102 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 12 HOH HOH . D 4 HOH A 20 420 64 HOH HOH . D 4 HOH A 21 421 19 HOH HOH . D 4 HOH A 22 422 79 HOH HOH . D 4 HOH A 23 423 65 HOH HOH . D 4 HOH A 24 424 41 HOH HOH . D 4 HOH A 25 425 13 HOH HOH . D 4 HOH A 26 426 61 HOH HOH . D 4 HOH A 27 427 66 HOH HOH . D 4 HOH A 28 428 82 HOH HOH . D 4 HOH A 29 429 26 HOH HOH . D 4 HOH A 30 430 31 HOH HOH . D 4 HOH A 31 431 15 HOH HOH . D 4 HOH A 32 432 11 HOH HOH . D 4 HOH A 33 433 16 HOH HOH . D 4 HOH A 34 434 29 HOH HOH . D 4 HOH A 35 435 22 HOH HOH . D 4 HOH A 36 436 59 HOH HOH . D 4 HOH A 37 437 2 HOH HOH . D 4 HOH A 38 438 74 HOH HOH . D 4 HOH A 39 439 24 HOH HOH . D 4 HOH A 40 440 5 HOH HOH . D 4 HOH A 41 441 27 HOH HOH . D 4 HOH A 42 442 28 HOH HOH . D 4 HOH A 43 443 51 HOH HOH . D 4 HOH A 44 444 9 HOH HOH . D 4 HOH A 45 445 95 HOH HOH . D 4 HOH A 46 446 37 HOH HOH . D 4 HOH A 47 447 4 HOH HOH . D 4 HOH A 48 448 38 HOH HOH . D 4 HOH A 49 449 32 HOH HOH . D 4 HOH A 50 450 49 HOH HOH . D 4 HOH A 51 451 57 HOH HOH . D 4 HOH A 52 452 34 HOH HOH . D 4 HOH A 53 453 63 HOH HOH . D 4 HOH A 54 454 94 HOH HOH . D 4 HOH A 55 455 14 HOH HOH . D 4 HOH A 56 456 47 HOH HOH . D 4 HOH A 57 457 55 HOH HOH . D 4 HOH A 58 458 7 HOH HOH . D 4 HOH A 59 459 21 HOH HOH . D 4 HOH A 60 460 106 HOH HOH . D 4 HOH A 61 461 43 HOH HOH . D 4 HOH A 62 462 20 HOH HOH . D 4 HOH A 63 463 39 HOH HOH . D 4 HOH A 64 464 101 HOH HOH . D 4 HOH A 65 465 68 HOH HOH . D 4 HOH A 66 466 92 HOH HOH . D 4 HOH A 67 467 105 HOH HOH . D 4 HOH A 68 468 23 HOH HOH . D 4 HOH A 69 469 50 HOH HOH . D 4 HOH A 70 470 84 HOH HOH . D 4 HOH A 71 471 40 HOH HOH . D 4 HOH A 72 472 80 HOH HOH . D 4 HOH A 73 473 67 HOH HOH . D 4 HOH A 74 474 88 HOH HOH . D 4 HOH A 75 475 62 HOH HOH . D 4 HOH A 76 476 25 HOH HOH . D 4 HOH A 77 477 72 HOH HOH . D 4 HOH A 78 478 42 HOH HOH . D 4 HOH A 79 479 86 HOH HOH . D 4 HOH A 80 480 48 HOH HOH . D 4 HOH A 81 481 108 HOH HOH . D 4 HOH A 82 482 100 HOH HOH . D 4 HOH A 83 483 89 HOH HOH . D 4 HOH A 84 484 97 HOH HOH . D 4 HOH A 85 485 93 HOH HOH . D 4 HOH A 86 486 107 HOH HOH . D 4 HOH A 87 487 54 HOH HOH . D 4 HOH A 88 488 35 HOH HOH . D 4 HOH A 89 489 83 HOH HOH . D 4 HOH A 90 490 44 HOH HOH . D 4 HOH A 91 491 56 HOH HOH . D 4 HOH A 92 492 17 HOH HOH . D 4 HOH A 93 493 91 HOH HOH . D 4 HOH A 94 494 30 HOH HOH . D 4 HOH A 95 495 77 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 73 HOH HOH . D 4 HOH A 98 498 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LAW . . . C 3 16.096 6.194 13.315 1 42.15 ? N1 LAW 302 A 1 HETATM 2 C C7 LAW . . . C 3 18.56 11.455 12.874 1 24.38 ? C7 LAW 302 A 1 HETATM 3 C C8 LAW . . . C 3 20.422 12.373 12.366 1 23.98 ? C8 LAW 302 A 1 HETATM 4 N N2 LAW . . . C 3 19.569 10.62 13.386 1 25.15 ? N2 LAW 302 A 1 HETATM 5 C C9 LAW . . . C 3 20.76 11.225 13.056 1 19.86 ? C9 LAW 302 A 1 HETATM 6 O O1 LAW . . . C 3 14.988 4.078 12.78 1 46.98 ? O1 LAW 302 A 1 HETATM 7 C C1 LAW . . . C 3 14.111 6.112 11.406 1 46.85 ? C1 LAW 302 A 1 HETATM 8 O O5 LAW . . . C 3 14.299 9.545 11.992 1 34.81 ? O5 LAW 302 A 1 HETATM 9 C C5 LAW . . . C 3 18.454 9.239 15.199 1 30.83 ? C5 LAW 302 A 1 HETATM 10 C C6 LAW . . . C 3 18.254 7.727 15.223 1 31.47 ? C6 LAW 302 A 1 HETATM 11 N N3 LAW . . . C 3 19.036 12.514 12.273 1 25.04 ? N3 LAW 302 A 1 HETATM 12 C C4 LAW . . . C 3 19.464 9.338 14.06 1 27.31 ? C4 LAW 302 A 1 HETATM 13 O O4 LAW . . . C 3 19.417 7.144 15.796 1 30.74 ? O4 LAW 302 A 1 HETATM 14 C C3 LAW . . . C 3 18.229 7.388 13.729 1 32.02 ? C3 LAW 302 A 1 HETATM 15 O O3 LAW . . . C 3 19.054 9.74 16.391 1 32.38 ? O3 LAW 302 A 1 HETATM 16 C C2 LAW . . . C 3 16.882 7.399 13.034 1 36.52 ? C2 LAW 302 A 1 HETATM 17 N N4 LAW . . . C 3 21.992 10.783 13.313 1 19.61 ? N4 LAW 302 A 1 HETATM 18 N N LAW . . . C 3 12.688 7.091 13.223 1 49.23 ? N LAW 302 A 1 HETATM 19 C C LAW . . . C 3 12.811 6.061 12.193 1 48.77 ? C LAW 302 A 1 HETATM 20 O O LAW . . . C 3 16.496 5.142 11.136 1 48.7 ? O LAW 302 A 1 HETATM 21 C C10 LAW . . . C 3 22.913 11.594 12.786 1 20.9 ? C10 LAW 302 A 1 HETATM 22 C C11 LAW . . . C 3 21.477 13.144 11.852 1 24.44 ? C11 LAW 302 A 1 HETATM 23 C C12 LAW . . . C 3 17.174 11.144 12.95 1 26.59 ? C12 LAW 302 A 1 HETATM 24 C C13 LAW . . . C 3 15.996 10.953 12.925 1 30.12 ? C13 LAW 302 A 1 HETATM 25 C C14 LAW . . . C 3 14.562 10.68 12.815 1 31.92 ? C14 LAW 302 A 1 HETATM 26 C C15 LAW . . . C 3 14.118 9.893 10.61 1 29.4 ? C15 LAW 302 A 1 HETATM 27 C C16 LAW . . . C 3 15.439 9.798 9.882 1 27.13 ? C16 LAW 302 A 1 HETATM 28 C C17 LAW . . . C 3 16.959 8.369 8.924 1 28.23 ? C17 LAW 302 A 1 HETATM 29 C C18 LAW . . . C 3 16.706 9.471 7.877 1 25.42 ? C18 LAW 302 A 1 HETATM 30 C C19 LAW . . . C 3 15.448 10.183 8.408 1 25.29 ? C19 LAW 302 A 1 HETATM 31 C C20 LAW . . . C 3 16.026 6.364 7.676 1 27.87 ? C20 LAW 302 A 1 HETATM 32 C C21 LAW . . . C 3 17.694 5.05 7.66 1 27.75 ? C21 LAW 302 A 1 HETATM 33 C C22 LAW . . . C 3 18.098 6.177 8.36 1 28.06 ? C22 LAW 302 A 1 HETATM 34 C C23 LAW . . . C 3 20.122 5.375 8.667 1 27.19 ? C23 LAW 302 A 1 HETATM 35 C C24 LAW . . . C 3 18.652 4.031 7.49 1 26.66 ? C24 LAW 302 A 1 HETATM 36 N N10 LAW . . . C 3 19.878 4.232 8.017 1 27.8 ? N10 LAW 302 A 1 HETATM 37 N N11 LAW . . . C 3 18.416 2.887 6.837 1 24.63 ? N11 LAW 302 A 1 HETATM 38 N N5 LAW . . . C 3 22.737 12.715 12.081 1 23.09 ? N5 LAW 302 A 1 HETATM 39 N N6 LAW . . . C 3 21.301 14.264 11.147 1 23.97 ? N6 LAW 302 A 1 HETATM 40 N N7 LAW . . . C 3 17.013 7.023 8.363 1 27.9 ? N7 LAW 302 A 1 HETATM 41 N N8 LAW . . . C 3 16.38 5.179 7.235 1 26.92 ? N8 LAW 302 A 1 HETATM 42 N N9 LAW . . . C 3 19.303 6.403 8.892 1 26.67 ? N9 LAW 302 A 1 HETATM 43 O O2 LAW . . . C 3 19.128 8.333 13.119 1 29.08 ? O2 LAW 302 A 1 HETATM 44 O O6 LAW . . . C 3 15.91 8.438 9.877 1 27.17 ? O6 LAW 302 A 1 HETATM 45 O O7 LAW . . . C 3 17.83 10.346 7.816 1 24.69 ? O7 LAW 302 A 1 HETATM 46 O O8 LAW . . . C 3 15.566 11.591 8.237 1 22.04 ? O8 LAW 302 A 1 HETATM 47 S S LAW . . . C 3 15.484 5.259 12.142 1 46.96 ? S LAW 302 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #