data_8AA1 # _model_server_result.job_id AMSK8Fqw1pH3025iN3Nq6A _model_server_result.datetime_utc '2024-11-22 10:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 8AA1 # _exptl.entry_id 8AA1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AA1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 FRU FRU C2 O2 . O6 HO6 . sing 2 ? 3 3 2 FRU FRU C2 O2 . O6 HO6 . sing 3 ? 3 4 3 FRU FRU C2 O2 . O6 HO6 . sing 4 ? 4 2 1 FRU FRU C2 O2 . O6 HO6 . sing 5 ? 4 3 2 FRU FRU C2 O2 . O6 HO6 . sing 6 ? 4 4 3 FRU FRU C2 O2 . O6 HO6 . sing 7 ? 4 5 4 FRU FRU C2 O2 . O6 HO6 . sing 8 ? 4 6 5 FRU FRU C2 O2 . O6 HO6 . sing 9 ? 4 7 3 FRU FRU C2 O2 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E FRU 1 D 1 FRU D 4 FRU 3 n E FRU 2 D 2 FRU D 3 FRU 3 n E FRU 3 D 3 FRU D 2 FRU 3 n E FRU 4 D 4 FRU D 1 FRU 3 n F FRU 1 L 1 FRU L 4 FRU 3 n F FRU 2 L 2 FRU L 3 FRU 3 n F FRU 3 L 3 FRU L 2 FRU 3 n F FRU 4 L 4 FRU L 1 FRU 4 n G FRU 1 C 1 FRU C 6 FRU 4 n G FRU 2 C 2 FRU C 5 FRU 4 n G FRU 3 C 3 FRU C 4 FRU 4 n G FRU 4 C 4 FRU C 3 FRU 4 n G FRU 5 C 5 FRU C 2 FRU 4 n G FRU 6 C 6 FRU C 1 FRU 4 n G FRU 7 C 7 FRU C 7 FRU 4 n H FRU 1 K 1 FRU K 6 FRU 4 n H FRU 2 K 2 FRU K 5 FRU 4 n H FRU 3 K 3 FRU K 4 FRU 4 n H FRU 4 K 4 FRU K 3 FRU 4 n H FRU 5 K 5 FRU K 2 FRU 4 n H FRU 6 K 6 FRU K 1 FRU 4 n H FRU 7 K 7 FRU K 7 FRU # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 405 B CYS 387 1_555 A SG CYS 407 B CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 C SG CYS 405 J CYS 387 1_555 C SG CYS 407 J CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 E O6 FRU . D FRU 1 1_555 E C2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 E O6 FRU . D FRU 2 1_555 E C2 FRU . D FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale3 E O6 FRU . D FRU 3 1_555 E C2 FRU . D FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 F O6 FRU . L FRU 1 1_555 F C2 FRU . L FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale5 F O6 FRU . L FRU 2 1_555 F C2 FRU . L FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale6 F O6 FRU . L FRU 3 1_555 F C2 FRU . L FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale7 G O6 FRU . C FRU 1 1_555 G C2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale8 G O6 FRU . C FRU 2 1_555 G C2 FRU . C FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale9 G O6 FRU . C FRU 3 1_555 G C2 FRU . C FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale10 G O1 FRU . C FRU 3 1_555 G C2 FRU . C FRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale11 G O6 FRU . C FRU 4 1_555 G C2 FRU . C FRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale12 G O6 FRU . C FRU 5 1_555 G C2 FRU . C FRU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale13 H O6 FRU . K FRU 1 1_555 H C2 FRU . K FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale14 H O6 FRU . K FRU 2 1_555 H C2 FRU . K FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale15 H O6 FRU . K FRU 3 1_555 H C2 FRU . K FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale16 H O1 FRU . K FRU 3 1_555 H C2 FRU . K FRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale17 H O6 FRU . K FRU 4 1_555 H C2 FRU . K FRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale18 H O6 FRU . K FRU 5 1_555 H C2 FRU . K FRU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc1 A OE1 GLU 280 B GLU 262 1_555 I MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A O TYR 291 B TYR 273 1_555 I MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A O SER 417 B SER 399 1_555 I MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 A OD1 ASN 419 B ASN 401 1_555 I MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc5 B OD1 ASP 862 A ASP 837 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 B OD1 ASP 864 A ASP 839 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc7 B OD1 ASN 866 A ASN 841 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 B O VAL 868 A VAL 843 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 B OD1 ASP 873 A ASP 848 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc10 B OD2 ASP 873 A ASP 848 1_555 J MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 C OE1 GLU 280 J GLU 262 1_555 K MG MG . J MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc12 C O TYR 291 J TYR 273 1_555 K MG MG . J MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc13 C O SER 417 J SER 399 1_555 K MG MG . J MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc14 C OD1 ASN 419 J ASN 401 1_555 K MG MG . J MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 D OD1 ASP 862 I ASP 837 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc16 D OD1 ASP 864 I ASP 839 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc17 D OD1 ASN 866 I ASN 841 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc18 D O VAL 868 I VAL 843 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc19 D OD1 ASP 873 I ASP 848 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc20 D OD2 ASP 873 I ASP 848 1_555 L MG MG . I MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AA1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MG B 1 601 601 MG MG . J 5 MG A 1 1101 1021 MG MG . K 5 MG J 1 601 601 MG MG . L 5 MG I 1 1101 1021 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x 171.124 _atom_site.Cartn_y 161.374 _atom_site.Cartn_z 188.244 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id J _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 129 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 1 #