data_8AAA # _model_server_result.job_id -GpYc0veTZ7PuztUcWAekw _model_server_result.datetime_utc '2024-10-12 01:27:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aaa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8AAA # _exptl.entry_id 8AAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.313 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AAA _cell.length_a 112.2 _cell.length_b 112.2 _cell.length_c 35.534 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 337 1_555 A SG CYS 32 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 50 A CYS 380 1_555 A SG CYS 103 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 62 A CYS 392 1_555 A SG CYS 196 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 151 A CYS 481 1_555 A SG CYS 159 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? covale ? covale1 B SG CYS 2 B CYS 2 1_555 C C25 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale2 B SG CYS 7 B CYS 7 1_555 C C19 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale3 B SG CYS 16 B CYS 16 1_555 C C16 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? covale ? covale4 B C ALA 17 B ALA 17 1_555 B N NH2 18 B NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.23 ? # _chem_comp.formula 'C12 H21 N3 O3' _chem_comp.formula_weight 255.313 _chem_comp.id 29N _chem_comp.mon_nstd_flag . _chem_comp.name "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one, bound form" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C14 29N sing 1 n n O15 C13 29N doub 2 n n C14 C13 29N sing 3 n n C13 N3 29N sing 4 n n C16 C8 29N sing 5 n n C8 C7 29N sing 6 n n N3 C2 29N sing 7 n n N3 C4 29N sing 8 n n C2 N1 29N sing 9 n n C7 N1 29N sing 10 n n C7 O9 29N doub 11 n n N1 C6 29N sing 12 n n C4 N5 29N sing 13 n n C19 C11 29N sing 14 n n N5 C6 29N sing 15 n n N5 C10 29N sing 16 n n C11 C10 29N sing 17 n n C10 O12 29N doub 18 n n C2 H1 29N sing 19 n n C2 H2 29N sing 20 n n C4 H3 29N sing 21 n n C4 H4 29N sing 22 n n C6 H5 29N sing 23 n n C6 H6 29N sing 24 n n C8 H7 29N sing 25 n n C8 H8 29N sing 26 n n C11 H9 29N sing 27 n n C11 H10 29N sing 28 n n C14 H11 29N sing 29 n n C14 H12 29N sing 30 n n C16 H13 29N sing 31 n n C16 H14 29N sing 32 n n C16 H15 29N sing 33 n n C19 H16 29N sing 34 n n C19 H17 29N sing 35 n n C19 H18 29N sing 36 n n C25 H19 29N sing 37 n n C25 H20 29N sing 38 n n C25 H21 29N sing 39 n n # _atom_sites.entry_id 8AAA _atom_sites.fract_transf_matrix[1][1] 0.008913 _atom_sites.fract_transf_matrix[1][2] 0.005146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 29N B 1 101 0 29N 001 . D 4 HOH A 1 601 79 HOH HOH . D 4 HOH A 2 602 14 HOH HOH . D 4 HOH A 3 603 72 HOH HOH . D 4 HOH A 4 604 53 HOH HOH . D 4 HOH A 5 605 99 HOH HOH . D 4 HOH A 6 606 7 HOH HOH . D 4 HOH A 7 607 1 HOH HOH . D 4 HOH A 8 608 68 HOH HOH . D 4 HOH A 9 609 64 HOH HOH . D 4 HOH A 10 610 30 HOH HOH . D 4 HOH A 11 611 31 HOH HOH . D 4 HOH A 12 612 55 HOH HOH . D 4 HOH A 13 613 85 HOH HOH . D 4 HOH A 14 614 33 HOH HOH . D 4 HOH A 15 615 84 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 76 HOH HOH . D 4 HOH A 18 618 3 HOH HOH . D 4 HOH A 19 619 66 HOH HOH . D 4 HOH A 20 620 60 HOH HOH . D 4 HOH A 21 621 10 HOH HOH . D 4 HOH A 22 622 70 HOH HOH . D 4 HOH A 23 623 42 HOH HOH . D 4 HOH A 24 624 61 HOH HOH . D 4 HOH A 25 625 44 HOH HOH . D 4 HOH A 26 626 59 HOH HOH . D 4 HOH A 27 627 112 HOH HOH . D 4 HOH A 28 628 83 HOH HOH . D 4 HOH A 29 629 25 HOH HOH . D 4 HOH A 30 630 105 HOH HOH . D 4 HOH A 31 631 73 HOH HOH . D 4 HOH A 32 632 71 HOH HOH . D 4 HOH A 33 633 19 HOH HOH . D 4 HOH A 34 634 58 HOH HOH . D 4 HOH A 35 635 32 HOH HOH . D 4 HOH A 36 636 27 HOH HOH . D 4 HOH A 37 637 75 HOH HOH . D 4 HOH A 38 638 2 HOH HOH . D 4 HOH A 39 639 67 HOH HOH . D 4 HOH A 40 640 111 HOH HOH . D 4 HOH A 41 641 6 HOH HOH . D 4 HOH A 42 642 36 HOH HOH . D 4 HOH A 43 643 93 HOH HOH . D 4 HOH A 44 644 92 HOH HOH . D 4 HOH A 45 645 49 HOH HOH . D 4 HOH A 46 646 5 HOH HOH . D 4 HOH A 47 647 28 HOH HOH . D 4 HOH A 48 648 18 HOH HOH . D 4 HOH A 49 649 24 HOH HOH . D 4 HOH A 50 650 4 HOH HOH . D 4 HOH A 51 651 69 HOH HOH . D 4 HOH A 52 652 21 HOH HOH . D 4 HOH A 53 653 115 HOH HOH . D 4 HOH A 54 654 88 HOH HOH . D 4 HOH A 55 655 91 HOH HOH . D 4 HOH A 56 656 114 HOH HOH . D 4 HOH A 57 657 37 HOH HOH . D 4 HOH A 58 658 100 HOH HOH . D 4 HOH A 59 659 87 HOH HOH . D 4 HOH A 60 660 89 HOH HOH . D 4 HOH A 61 661 109 HOH HOH . D 4 HOH A 62 662 9 HOH HOH . D 4 HOH A 63 663 74 HOH HOH . D 4 HOH A 64 664 107 HOH HOH . D 4 HOH A 65 665 11 HOH HOH . D 4 HOH A 66 666 56 HOH HOH . D 4 HOH A 67 667 41 HOH HOH . D 4 HOH A 68 668 113 HOH HOH . D 4 HOH A 69 669 34 HOH HOH . D 4 HOH A 70 670 15 HOH HOH . D 4 HOH A 71 671 26 HOH HOH . D 4 HOH A 72 672 65 HOH HOH . D 4 HOH A 73 673 35 HOH HOH . D 4 HOH A 74 674 82 HOH HOH . D 4 HOH A 75 675 13 HOH HOH . D 4 HOH A 76 676 94 HOH HOH . D 4 HOH A 77 677 8 HOH HOH . D 4 HOH A 78 678 62 HOH HOH . D 4 HOH A 79 679 90 HOH HOH . D 4 HOH A 80 680 23 HOH HOH . D 4 HOH A 81 681 39 HOH HOH . D 4 HOH A 82 682 12 HOH HOH . D 4 HOH A 83 683 50 HOH HOH . D 4 HOH A 84 684 51 HOH HOH . D 4 HOH A 85 685 57 HOH HOH . D 4 HOH A 86 686 104 HOH HOH . D 4 HOH A 87 687 54 HOH HOH . D 4 HOH A 88 688 81 HOH HOH . D 4 HOH A 89 689 77 HOH HOH . D 4 HOH A 90 690 116 HOH HOH . D 4 HOH A 91 691 110 HOH HOH . D 4 HOH A 92 692 80 HOH HOH . D 4 HOH A 93 693 106 HOH HOH . E 4 HOH B 1 201 29 HOH HOH . E 4 HOH B 2 202 20 HOH HOH . E 4 HOH B 3 203 101 HOH HOH . E 4 HOH B 4 204 78 HOH HOH . E 4 HOH B 5 205 63 HOH HOH . E 4 HOH B 6 206 102 HOH HOH . E 4 HOH B 7 207 95 HOH HOH . E 4 HOH B 8 208 96 HOH HOH . E 4 HOH B 9 209 97 HOH HOH . E 4 HOH B 10 210 98 HOH HOH . E 4 HOH B 11 211 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 29N . . . C 3 -32.978 58.869 -2.093 1 51.36 ? N1 29N 101 B 1 HETATM 2 C C2 29N . . . C 3 -33.941 58.637 -1.031 1 50.55 ? C2 29N 101 B 1 HETATM 3 N N3 29N . . . C 3 -34.018 59.84 -0.211 1 50.56 ? N3 29N 101 B 1 HETATM 4 C C4 29N . . . C 3 -34.341 61.026 -0.997 1 50.08 ? C4 29N 101 B 1 HETATM 5 N N5 29N . . . C 3 -33.401 61.126 -2.116 1 49.89 ? N5 29N 101 B 1 HETATM 6 C C6 29N . . . C 3 -33.427 59.94 -2.962 1 50.66 ? C6 29N 101 B 1 HETATM 7 C C7 29N . . . C 3 -31.691 58.235 -2.135 1 52.26 ? C7 29N 101 B 1 HETATM 8 C C8 29N . . . C 3 -30.676 58.525 -3.237 1 53.01 ? C8 29N 101 B 1 HETATM 9 O O9 29N . . . C 3 -31.46 57.439 -1.298 1 52.43 ? O9 29N 101 B 1 HETATM 10 C C10 29N . . . C 3 -32.423 62.157 -2.331 1 49.25 ? C10 29N 101 B 1 HETATM 11 C C11 29N . . . C 3 -32.314 63.363 -1.402 1 48.85 ? C11 29N 101 B 1 HETATM 12 O O12 29N . . . C 3 -31.714 62.029 -3.264 1 49.07 ? O12 29N 101 B 1 HETATM 13 C C13 29N . . . C 3 -33.694 59.874 1.192 1 50.8 ? C13 29N 101 B 1 HETATM 14 C C14 29N . . . C 3 -33.307 58.591 1.931 1 50.81 ? C14 29N 101 B 1 HETATM 15 O O15 29N . . . C 3 -33.754 60.915 1.755 1 51.19 ? O15 29N 101 B 1 HETATM 16 C C16 29N . . . C 3 -29.528 57.526 -3.138 1 53.96 ? C16 29N 101 B 1 HETATM 17 C C19 29N . . . C 3 -31.314 63.142 -0.262 1 48.44 ? C19 29N 101 B 1 HETATM 18 C C25 29N . . . C 3 -32.514 58.869 3.201 1 50.76 ? C25 29N 101 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #