data_8AAI # _model_server_result.job_id shPo5Yonjrl83C7Y2dLmMg _model_server_result.datetime_utc '2025-06-28 17:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8AAI # _exptl.entry_id 8AAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.341 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[(2~{S})-3-methyl-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)butanoyl]amino]propanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.71 _cell.angle_beta 83.462 _cell.angle_gamma 77.033 _cell.entry_id 8AAI _cell.length_a 29.114 _cell.length_b 56.13 _cell.length_c 102.867 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C16 H20 N2 O4' _chem_comp.formula_weight 304.341 _chem_comp.id LKV _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[(2~{S})-3-methyl-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)butanoyl]amino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 LKV sing 194 n n O1 C7 LKV doub 195 n n C7 C5 LKV sing 196 n n C7 O2 LKV sing 197 n n C5 N LKV sing 198 n n O3 C15 LKV doub 199 n n N C4 LKV sing 200 n n C3 C4 LKV sing 201 n n C3 N1 LKV sing 202 n n C3 C1 LKV sing 203 n n C15 N1 LKV sing 204 n n C15 C14 LKV sing 205 n n C2 C1 LKV sing 206 n n C4 O LKV doub 207 n n C C1 LKV sing 208 n n N1 C8 LKV sing 209 n n C13 C14 LKV doub 210 n y C13 C12 LKV sing 211 n y C14 C9 LKV sing 212 n y C8 C9 LKV sing 213 n n C12 C11 LKV doub 214 n y C9 C10 LKV doub 215 n y C11 C10 LKV sing 216 n y C5 H1 LKV sing 217 n n C8 H14 LKV sing 218 n n C8 H15 LKV sing 219 n n C10 H16 LKV sing 220 n n C12 H18 LKV sing 221 n n C13 H19 LKV sing 222 n n C1 H5 LKV sing 223 n n C11 H17 LKV sing 224 n n C3 H LKV sing 225 n n C2 H7 LKV sing 226 n n C2 H6 LKV sing 227 n n C2 H8 LKV sing 228 n n C H4 LKV sing 229 n n C H3 LKV sing 230 n n C H2 LKV sing 231 n n N H9 LKV sing 232 n n C6 H12 LKV sing 233 n n C6 H11 LKV sing 234 n n C6 H10 LKV sing 235 n n O2 H13 LKV sing 236 n n # _atom_sites.entry_id 8AAI _atom_sites.fract_transf_matrix[1][1] 0.034348 _atom_sites.fract_transf_matrix[1][2] -0.007909 _atom_sites.fract_transf_matrix[1][3] -0.003126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018282 _atom_sites.fract_transf_matrix[2][3] -0.001924 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LKV A 1 301 301 LKV FE5 . F 2 LKV B 1 301 301 LKV FE5 . G 2 LKV C 1 301 301 LKV FE5 . H 2 LKV D 1 301 301 LKV FE5 . I 3 HOH A 1 401 113 HOH HOH . I 3 HOH A 2 402 100 HOH HOH . I 3 HOH A 3 403 12 HOH HOH . I 3 HOH A 4 404 110 HOH HOH . I 3 HOH A 5 405 101 HOH HOH . I 3 HOH A 6 406 146 HOH HOH . I 3 HOH A 7 407 39 HOH HOH . I 3 HOH A 8 408 198 HOH HOH . I 3 HOH A 9 409 83 HOH HOH . I 3 HOH A 10 410 36 HOH HOH . I 3 HOH A 11 411 216 HOH HOH . I 3 HOH A 12 412 40 HOH HOH . I 3 HOH A 13 413 11 HOH HOH . I 3 HOH A 14 414 34 HOH HOH . I 3 HOH A 15 415 37 HOH HOH . I 3 HOH A 16 416 104 HOH HOH . I 3 HOH A 17 417 108 HOH HOH . I 3 HOH A 18 418 31 HOH HOH . I 3 HOH A 19 419 95 HOH HOH . I 3 HOH A 20 420 105 HOH HOH . I 3 HOH A 21 421 214 HOH HOH . I 3 HOH A 22 422 81 HOH HOH . I 3 HOH A 23 423 178 HOH HOH . I 3 HOH A 24 424 29 HOH HOH . I 3 HOH A 25 425 102 HOH HOH . I 3 HOH A 26 426 32 HOH HOH . I 3 HOH A 27 427 147 HOH HOH . I 3 HOH A 28 428 103 HOH HOH . I 3 HOH A 29 429 92 HOH HOH . I 3 HOH A 30 430 212 HOH HOH . I 3 HOH A 31 431 114 HOH HOH . I 3 HOH A 32 432 33 HOH HOH . I 3 HOH A 33 433 245 HOH HOH . I 3 HOH A 34 434 141 HOH HOH . I 3 HOH A 35 435 107 HOH HOH . J 3 HOH B 1 401 130 HOH HOH . J 3 HOH B 2 402 117 HOH HOH . J 3 HOH B 3 403 56 HOH HOH . J 3 HOH B 4 404 180 HOH HOH . J 3 HOH B 5 405 97 HOH HOH . J 3 HOH B 6 406 120 HOH HOH . J 3 HOH B 7 407 48 HOH HOH . J 3 HOH B 8 408 193 HOH HOH . J 3 HOH B 9 409 197 HOH HOH . J 3 HOH B 10 410 42 HOH HOH . J 3 HOH B 11 411 115 HOH HOH . J 3 HOH B 12 412 246 HOH HOH . J 3 HOH B 13 413 45 HOH HOH . J 3 HOH B 14 414 10 HOH HOH . J 3 HOH B 15 415 51 HOH HOH . J 3 HOH B 16 416 6 HOH HOH . J 3 HOH B 17 417 1 HOH HOH . J 3 HOH B 18 418 47 HOH HOH . J 3 HOH B 19 419 127 HOH HOH . J 3 HOH B 20 420 157 HOH HOH . J 3 HOH B 21 421 223 HOH HOH . J 3 HOH B 22 422 52 HOH HOH . J 3 HOH B 23 423 240 HOH HOH . J 3 HOH B 24 424 43 HOH HOH . J 3 HOH B 25 425 17 HOH HOH . J 3 HOH B 26 426 24 HOH HOH . J 3 HOH B 27 427 152 HOH HOH . J 3 HOH B 28 428 195 HOH HOH . J 3 HOH B 29 429 84 HOH HOH . J 3 HOH B 30 430 129 HOH HOH . J 3 HOH B 31 431 119 HOH HOH . J 3 HOH B 32 432 41 HOH HOH . J 3 HOH B 33 433 22 HOH HOH . J 3 HOH B 34 434 50 HOH HOH . J 3 HOH B 35 435 202 HOH HOH . J 3 HOH B 36 436 156 HOH HOH . J 3 HOH B 37 437 44 HOH HOH . J 3 HOH B 38 438 85 HOH HOH . J 3 HOH B 39 439 150 HOH HOH . J 3 HOH B 40 440 181 HOH HOH . J 3 HOH B 41 441 154 HOH HOH . J 3 HOH B 42 442 126 HOH HOH . J 3 HOH B 43 443 219 HOH HOH . J 3 HOH B 44 444 21 HOH HOH . J 3 HOH B 45 445 151 HOH HOH . J 3 HOH B 46 446 118 HOH HOH . J 3 HOH B 47 447 221 HOH HOH . J 3 HOH B 48 448 220 HOH HOH . J 3 HOH B 49 449 121 HOH HOH . J 3 HOH B 50 450 222 HOH HOH . J 3 HOH B 51 451 203 HOH HOH . J 3 HOH B 52 452 242 HOH HOH . K 3 HOH C 1 401 172 HOH HOH . K 3 HOH C 2 402 61 HOH HOH . K 3 HOH C 3 403 93 HOH HOH . K 3 HOH C 4 404 98 HOH HOH . K 3 HOH C 5 405 250 HOH HOH . K 3 HOH C 6 406 169 HOH HOH . K 3 HOH C 7 407 208 HOH HOH . K 3 HOH C 8 408 59 HOH HOH . K 3 HOH C 9 409 228 HOH HOH . K 3 HOH C 10 410 136 HOH HOH . K 3 HOH C 11 411 189 HOH HOH . K 3 HOH C 12 412 9 HOH HOH . K 3 HOH C 13 413 188 HOH HOH . K 3 HOH C 14 414 7 HOH HOH . K 3 HOH C 15 415 241 HOH HOH . K 3 HOH C 16 416 111 HOH HOH . K 3 HOH C 17 417 187 HOH HOH . K 3 HOH C 18 418 62 HOH HOH . K 3 HOH C 19 419 225 HOH HOH . K 3 HOH C 20 420 174 HOH HOH . K 3 HOH C 21 421 63 HOH HOH . K 3 HOH C 22 422 231 HOH HOH . K 3 HOH C 23 423 87 HOH HOH . K 3 HOH C 24 424 200 HOH HOH . K 3 HOH C 25 425 135 HOH HOH . K 3 HOH C 26 426 94 HOH HOH . K 3 HOH C 27 427 134 HOH HOH . K 3 HOH C 28 428 243 HOH HOH . K 3 HOH C 29 429 252 HOH HOH . K 3 HOH C 30 430 185 HOH HOH . K 3 HOH C 31 431 248 HOH HOH . K 3 HOH C 32 432 173 HOH HOH . K 3 HOH C 33 433 158 HOH HOH . K 3 HOH C 34 434 251 HOH HOH . K 3 HOH C 35 435 161 HOH HOH . K 3 HOH C 36 436 183 HOH HOH . K 3 HOH C 37 437 227 HOH HOH . K 3 HOH C 38 438 171 HOH HOH . K 3 HOH C 39 439 132 HOH HOH . K 3 HOH C 40 440 131 HOH HOH . K 3 HOH C 41 441 205 HOH HOH . K 3 HOH C 42 442 57 HOH HOH . K 3 HOH C 43 443 206 HOH HOH . K 3 HOH C 44 444 159 HOH HOH . K 3 HOH C 45 445 160 HOH HOH . K 3 HOH C 46 446 226 HOH HOH . K 3 HOH C 47 447 229 HOH HOH . K 3 HOH C 48 448 164 HOH HOH . K 3 HOH C 49 449 165 HOH HOH . K 3 HOH C 50 450 162 HOH HOH . K 3 HOH C 51 451 191 HOH HOH . K 3 HOH C 52 452 167 HOH HOH . L 3 HOH D 1 401 122 HOH HOH . L 3 HOH D 2 402 91 HOH HOH . L 3 HOH D 3 403 68 HOH HOH . L 3 HOH D 4 404 78 HOH HOH . L 3 HOH D 5 405 4 HOH HOH . L 3 HOH D 6 406 76 HOH HOH . L 3 HOH D 7 407 70 HOH HOH . L 3 HOH D 8 408 53 HOH HOH . L 3 HOH D 9 409 211 HOH HOH . L 3 HOH D 10 410 144 HOH HOH . L 3 HOH D 11 411 232 HOH HOH . L 3 HOH D 12 412 77 HOH HOH . L 3 HOH D 13 413 143 HOH HOH . L 3 HOH D 14 414 234 HOH HOH . L 3 HOH D 15 415 75 HOH HOH . L 3 HOH D 16 416 88 HOH HOH . L 3 HOH D 17 417 73 HOH HOH . L 3 HOH D 18 418 138 HOH HOH . L 3 HOH D 19 419 116 HOH HOH . L 3 HOH D 20 420 137 HOH HOH . L 3 HOH D 21 421 224 HOH HOH . L 3 HOH D 22 422 140 HOH HOH . L 3 HOH D 23 423 123 HOH HOH . L 3 HOH D 24 424 55 HOH HOH . L 3 HOH D 25 425 26 HOH HOH . L 3 HOH D 26 426 3 HOH HOH . L 3 HOH D 27 427 210 HOH HOH . L 3 HOH D 28 428 254 HOH HOH . L 3 HOH D 29 429 5 HOH HOH . L 3 HOH D 30 430 13 HOH HOH . L 3 HOH D 31 431 176 HOH HOH . L 3 HOH D 32 432 89 HOH HOH . L 3 HOH D 33 433 28 HOH HOH . L 3 HOH D 34 434 74 HOH HOH . L 3 HOH D 35 435 139 HOH HOH . L 3 HOH D 36 436 253 HOH HOH . L 3 HOH D 37 437 65 HOH HOH . L 3 HOH D 38 438 237 HOH HOH . L 3 HOH D 39 439 99 HOH HOH . L 3 HOH D 40 440 69 HOH HOH . L 3 HOH D 41 441 90 HOH HOH . L 3 HOH D 42 442 213 HOH HOH . L 3 HOH D 43 443 209 HOH HOH . L 3 HOH D 44 444 15 HOH HOH . L 3 HOH D 45 445 142 HOH HOH . L 3 HOH D 46 446 179 HOH HOH . L 3 HOH D 47 447 196 HOH HOH . L 3 HOH D 48 448 235 HOH HOH . L 3 HOH D 49 449 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LKV . . . E 2 -14.007 -2.78 -0.424 1 47.68 0 C4 LKV 301 A 1 HETATM 2 C C5 LKV . . . E 2 -16.016 -2.673 -1.82 1 52.13 0 C5 LKV 301 A 1 HETATM 3 C C7 LKV . . . E 2 -16.928 -3.88 -1.962 1 54.13 0 C7 LKV 301 A 1 HETATM 4 C C8 LKV . . . E 2 -12.324 -0.949 1.344 1 43.76 0 C8 LKV 301 A 1 HETATM 5 C C10 LKV . . . E 2 -11.111 1.002 2.622 1 42.83 0 C10 LKV 301 A 1 HETATM 6 C C12 LKV . . . E 2 -9.201 1.944 1.508 1 42.59 0 C12 LKV 301 A 1 HETATM 7 C C13 LKV . . . E 2 -9.386 1.082 0.436 1 43.07 0 C13 LKV 301 A 1 HETATM 8 C C15 LKV . . . E 2 -10.869 -0.847 -0.513 1 43.41 0 C15 LKV 301 A 1 HETATM 9 C C1 LKV . . . E 2 -11.817 -4.002 0.099 1 46.51 0 C1 LKV 301 A 1 HETATM 10 O O3 LKV . . . E 2 -10.417 -1.068 -1.62 1 42.9 0 O3 LKV 301 A 1 HETATM 11 C C14 LKV . . . E 2 -10.45 0.18 0.467 1 43.64 0 C14 LKV 301 A 1 HETATM 12 C C11 LKV . . . E 2 -10.062 1.908 2.593 1 42.79 0 C11 LKV 301 A 1 HETATM 13 C C9 LKV . . . E 2 -11.305 0.133 1.554 1 43.32 0 C9 LKV 301 A 1 HETATM 14 N N1 LKV . . . E 2 -11.914 -1.512 0.053 1 44.05 0 N1 LKV 301 A 1 HETATM 15 C C3 LKV . . . E 2 -12.474 -2.741 -0.529 1 45.72 0 C3 LKV 301 A 1 HETATM 16 C C2 LKV . . . E 2 -10.415 -4.235 -0.454 1 46.09 0 C2 LKV 301 A 1 HETATM 17 C C LKV . . . E 2 -12.672 -5.248 -0.114 1 46.98 0 C LKV 301 A 1 HETATM 18 O O LKV . . . E 2 -14.579 -2.58 0.645 1 47.78 0 O LKV 301 A 1 HETATM 19 N N LKV . . . E 2 -14.651 -3.098 -1.555 1 50.28 0 N LKV 301 A 1 HETATM 20 C C6 LKV . . . E 2 -16.073 -1.839 -3.092 1 51.92 0 C6 LKV 301 A 1 HETATM 21 O O1 LKV . . . E 2 -16.681 -4.785 -2.738 1 55.58 0 O1 LKV 301 A 1 HETATM 22 O O2 LKV . . . E 2 -17.988 -3.838 -1.184 1 54.35 0 O2 LKV 301 A 1 HETATM 23 H H1 LKV . . . E 2 -16.393 -2.084 -0.987 1 52.06 0 H1 LKV 301 A 1 HETATM 24 H H14 LKV . . . E 2 -12.302 -1.698 2.134 1 43.73 0 H14 LKV 301 A 1 HETATM 25 H H15 LKV . . . E 2 -13.332 -0.54 1.331 1 43.74 0 H15 LKV 301 A 1 HETATM 26 H H16 LKV . . . E 2 -11.769 0.96 3.487 1 42.9 0 H16 LKV 301 A 1 HETATM 27 H H18 LKV . . . E 2 -8.373 2.651 1.493 1 42.75 0 H18 LKV 301 A 1 HETATM 28 H H19 LKV . . . E 2 -8.713 1.092 -0.419 1 43.07 0 H19 LKV 301 A 1 HETATM 29 H H5 LKV . . . E 2 -11.726 -3.834 1.171 1 46.37 0 H5 LKV 301 A 1 HETATM 30 H H17 LKV . . . E 2 -9.918 2.592 3.428 1 42.75 0 H17 LKV 301 A 1 HETATM 31 H H LKV . . . E 2 -12.233 -2.748 -1.59 1 45.92 0 H LKV 301 A 1 HETATM 32 H H7 LKV . . . E 2 -10.462 -4.627 -1.469 1 46.22 0 H7 LKV 301 A 1 HETATM 33 H H6 LKV . . . E 2 -9.839 -4.962 0.116 1 46.22 0 H6 LKV 301 A 1 HETATM 34 H H8 LKV . . . E 2 -9.812 -3.333 -0.509 1 46.21 0 H8 LKV 301 A 1 HETATM 35 H H4 LKV . . . E 2 -13.101 -5.324 -1.113 1 46.85 0 H4 LKV 301 A 1 HETATM 36 H H3 LKV . . . E 2 -13.519 -5.276 0.571 1 46.84 0 H3 LKV 301 A 1 HETATM 37 H H2 LKV . . . E 2 -12.112 -6.165 0.065 1 46.84 0 H2 LKV 301 A 1 HETATM 38 H H9 LKV . . . E 2 -14.208 -3.653 -2.28 1 50.06 0 H9 LKV 301 A 1 HETATM 39 H H12 LKV . . . E 2 -15.835 -2.403 -3.994 1 51.96 0 H12 LKV 301 A 1 HETATM 40 H H11 LKV . . . E 2 -15.386 -0.995 -3.047 1 51.93 0 H11 LKV 301 A 1 HETATM 41 H H10 LKV . . . E 2 -17.07 -1.423 -3.234 1 51.92 0 H10 LKV 301 A 1 HETATM 42 H H13 LKV . . . E 2 -18.599 -4.624 -1.286 0 54.23 0 H13 LKV 301 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 172 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #