data_8AAK # _model_server_result.job_id doCCKzJa49dxqbxYsPrtsg _model_server_result.datetime_utc '2025-06-27 20:15:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8AAK # _exptl.entry_id 8AAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.384 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[(2~{S})-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)-3-phenyl-propanoyl]amino]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AAK _cell.length_a 34.66 _cell.length_b 96.91 _cell.length_c 103.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H20 N2 O4' _chem_comp.formula_weight 352.384 _chem_comp.id LL6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[(2~{S})-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)-3-phenyl-propanoyl]amino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 LL6 doub 207 n y C7 C8 LL6 sing 208 n y C6 C5 LL6 sing 209 n y C8 C9 LL6 doub 210 n y C5 C4 LL6 sing 211 n n C5 C10 LL6 doub 212 n y C4 C3 LL6 sing 213 n n O C2 LL6 doub 214 n n C13 C14 LL6 doub 215 n y C13 C12 LL6 sing 216 n y C11 C12 LL6 sing 217 n n C11 N1 LL6 sing 218 n n C14 C15 LL6 sing 219 n y C12 C17 LL6 doub 220 n y C9 C10 LL6 sing 221 n y C3 N1 LL6 sing 222 n n C3 C2 LL6 sing 223 n n N1 C18 LL6 sing 224 n n C2 N LL6 sing 225 n n C15 C16 LL6 doub 226 n y C17 C18 LL6 sing 227 n n C17 C16 LL6 sing 228 n y C18 O1 LL6 doub 229 n n O2 C19 LL6 doub 230 n n O3 C19 LL6 sing 231 n n C19 C1 LL6 sing 232 n n N C1 LL6 sing 233 n n C1 C LL6 sing 234 n n C1 H1 LL6 sing 235 n n C3 H2 LL6 sing 236 n n C4 H3 LL6 sing 237 n n C4 H4 LL6 sing 238 n n C6 H5 LL6 sing 239 n n C7 H6 LL6 sing 240 n n C8 H7 LL6 sing 241 n n C10 H8 LL6 sing 242 n n O3 H9 LL6 sing 243 n n C H10 LL6 sing 244 n n C H11 LL6 sing 245 n n C H12 LL6 sing 246 n n N H13 LL6 sing 247 n n C16 H14 LL6 sing 248 n n C15 H15 LL6 sing 249 n n C14 H16 LL6 sing 250 n n C13 H17 LL6 sing 251 n n C11 H18 LL6 sing 252 n n C11 H19 LL6 sing 253 n n C9 H20 LL6 sing 254 n n # _atom_sites.entry_id 8AAK _atom_sites.fract_transf_matrix[1][1] 0.028852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LL6 A 1 301 301 LL6 133 . D 2 LL6 B 1 301 301 LL6 133 . E 3 GOL B 1 302 401 GOL GOL . F 4 HOH A 1 401 60 HOH HOH . F 4 HOH A 2 402 43 HOH HOH . F 4 HOH A 3 403 1 HOH HOH . F 4 HOH A 4 404 45 HOH HOH . F 4 HOH A 5 405 95 HOH HOH . F 4 HOH A 6 406 24 HOH HOH . F 4 HOH A 7 407 34 HOH HOH . F 4 HOH A 8 408 108 HOH HOH . F 4 HOH A 9 409 77 HOH HOH . F 4 HOH A 10 410 52 HOH HOH . F 4 HOH A 11 411 88 HOH HOH . F 4 HOH A 12 412 49 HOH HOH . F 4 HOH A 13 413 76 HOH HOH . F 4 HOH A 14 414 87 HOH HOH . F 4 HOH A 15 415 74 HOH HOH . F 4 HOH A 16 416 104 HOH HOH . F 4 HOH A 17 417 13 HOH HOH . F 4 HOH A 18 418 84 HOH HOH . F 4 HOH A 19 419 107 HOH HOH . F 4 HOH A 20 420 103 HOH HOH . F 4 HOH A 21 421 85 HOH HOH . F 4 HOH A 22 422 82 HOH HOH . F 4 HOH A 23 423 46 HOH HOH . F 4 HOH A 24 424 42 HOH HOH . F 4 HOH A 25 425 53 HOH HOH . F 4 HOH A 26 426 23 HOH HOH . F 4 HOH A 27 427 28 HOH HOH . F 4 HOH A 28 428 40 HOH HOH . F 4 HOH A 29 429 50 HOH HOH . F 4 HOH A 30 430 71 HOH HOH . F 4 HOH A 31 431 73 HOH HOH . F 4 HOH A 32 432 30 HOH HOH . F 4 HOH A 33 433 94 HOH HOH . F 4 HOH A 34 434 25 HOH HOH . F 4 HOH A 35 435 75 HOH HOH . F 4 HOH A 36 436 93 HOH HOH . F 4 HOH A 37 437 48 HOH HOH . F 4 HOH A 38 438 21 HOH HOH . F 4 HOH A 39 439 22 HOH HOH . F 4 HOH A 40 440 26 HOH HOH . G 4 HOH B 1 401 80 HOH HOH . G 4 HOH B 2 402 67 HOH HOH . G 4 HOH B 3 403 101 HOH HOH . G 4 HOH B 4 404 62 HOH HOH . G 4 HOH B 5 405 54 HOH HOH . G 4 HOH B 6 406 55 HOH HOH . G 4 HOH B 7 407 9 HOH HOH . G 4 HOH B 8 408 2 HOH HOH . G 4 HOH B 9 409 19 HOH HOH . G 4 HOH B 10 410 3 HOH HOH . G 4 HOH B 11 411 56 HOH HOH . G 4 HOH B 12 412 97 HOH HOH . G 4 HOH B 13 413 92 HOH HOH . G 4 HOH B 14 414 112 HOH HOH . G 4 HOH B 15 415 8 HOH HOH . G 4 HOH B 16 416 110 HOH HOH . G 4 HOH B 17 417 4 HOH HOH . G 4 HOH B 18 418 91 HOH HOH . G 4 HOH B 19 419 90 HOH HOH . G 4 HOH B 20 420 12 HOH HOH . G 4 HOH B 21 421 58 HOH HOH . G 4 HOH B 22 422 96 HOH HOH . G 4 HOH B 23 423 70 HOH HOH . G 4 HOH B 24 424 89 HOH HOH . G 4 HOH B 25 425 113 HOH HOH . G 4 HOH B 26 426 109 HOH HOH . G 4 HOH B 27 427 11 HOH HOH . G 4 HOH B 28 428 68 HOH HOH . G 4 HOH B 29 429 38 HOH HOH . G 4 HOH B 30 430 35 HOH HOH . G 4 HOH B 31 431 83 HOH HOH . G 4 HOH B 32 432 106 HOH HOH . G 4 HOH B 33 433 7 HOH HOH . G 4 HOH B 34 434 63 HOH HOH . G 4 HOH B 35 435 69 HOH HOH . G 4 HOH B 36 436 116 HOH HOH . G 4 HOH B 37 437 78 HOH HOH . G 4 HOH B 38 438 32 HOH HOH . G 4 HOH B 39 439 105 HOH HOH . G 4 HOH B 40 440 100 HOH HOH . G 4 HOH B 41 441 41 HOH HOH . G 4 HOH B 42 442 115 HOH HOH . G 4 HOH B 43 443 79 HOH HOH . G 4 HOH B 44 444 81 HOH HOH . G 4 HOH B 45 445 39 HOH HOH . G 4 HOH B 46 446 59 HOH HOH . G 4 HOH B 47 447 111 HOH HOH . G 4 HOH B 48 448 57 HOH HOH . G 4 HOH B 49 449 36 HOH HOH . G 4 HOH B 50 450 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LL6 . . . D 2 -30.341 98.631 33.593 0.89 57.83 ? C1 LL6 301 B 1 HETATM 2 C C2 LL6 . . . D 2 -28.85 97.874 35.346 0.89 54.44 ? C2 LL6 301 B 1 HETATM 3 C C3 LL6 . . . D 2 -27.526 97.186 35.651 0.89 52.71 ? C3 LL6 301 B 1 HETATM 4 C C4 LL6 . . . D 2 -27.533 96.472 37.015 0.89 51.99 ? C4 LL6 301 B 1 HETATM 5 C C5 LL6 . . . D 2 -28.33 95.192 36.982 0.89 51.32 ? C5 LL6 301 B 1 HETATM 6 C C6 LL6 . . . D 2 -29.681 95.186 37.306 0.89 51.25 ? C6 LL6 301 B 1 HETATM 7 C C7 LL6 . . . D 2 -30.434 94.029 37.18 0.89 51.27 ? C7 LL6 301 B 1 HETATM 8 N N1 LL6 . . . D 2 -26.475 98.184 35.549 0.89 51.89 ? N1 LL6 301 B 1 HETATM 9 C C8 LL6 . . . D 2 -29.843 92.862 36.75 0.89 51.29 ? C8 LL6 301 B 1 HETATM 10 C C10 LL6 . . . D 2 -27.746 94.008 36.558 0.89 51.2 ? C10 LL6 301 B 1 HETATM 11 O O2 LL6 . . . D 2 -31.667 96.669 33.242 0.89 61.09 ? O2 LL6 301 B 1 HETATM 12 C C19 LL6 . . . D 2 -31.553 97.747 33.803 0.89 59.75 ? C19 LL6 301 B 1 HETATM 13 O O3 LL6 . . . D 2 -32.424 98.254 34.641 0.89 59.95 ? O3 LL6 301 B 1 HETATM 14 C C LL6 . . . D 2 -30.192 98.961 32.123 0.89 57.6 ? C LL6 301 B 1 HETATM 15 N N LL6 . . . D 2 -29.168 97.919 34.055 0.89 56.12 ? N LL6 301 B 1 HETATM 16 O O LL6 . . . D 2 -29.555 98.352 36.229 0.89 54.55 ? O LL6 301 B 1 HETATM 17 C C18 LL6 . . . D 2 -25.391 98.015 34.752 0.89 51.7 ? C18 LL6 301 B 1 HETATM 18 O O1 LL6 . . . D 2 -25.22 97.081 34.001 0.89 52.31 ? O1 LL6 301 B 1 HETATM 19 C C17 LL6 . . . D 2 -24.532 99.202 34.963 0.89 51.34 ? C17 LL6 301 B 1 HETATM 20 C C16 LL6 . . . D 2 -23.226 99.456 34.546 0.89 50.8 ? C16 LL6 301 B 1 HETATM 21 C C15 LL6 . . . D 2 -22.591 100.605 34.99 0.89 50.78 ? C15 LL6 301 B 1 HETATM 22 C C14 LL6 . . . D 2 -23.256 101.501 35.812 0.89 50.88 ? C14 LL6 301 B 1 HETATM 23 C C13 LL6 . . . D 2 -24.557 101.25 36.212 0.89 51 ? C13 LL6 301 B 1 HETATM 24 C C12 LL6 . . . D 2 -25.193 100.085 35.799 0.89 51.47 ? C12 LL6 301 B 1 HETATM 25 C C11 LL6 . . . D 2 -26.516 99.498 36.197 0.89 51.75 ? C11 LL6 301 B 1 HETATM 26 C C9 LL6 . . . D 2 -28.498 92.85 36.444 0.89 51.29 ? C9 LL6 301 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #