data_8AAP # _model_server_result.job_id STMRnA4yYQUoxYUkje-XcQ _model_server_result.datetime_utc '2025-06-28 16:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8AAP # _exptl.entry_id 8AAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 567.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[(2S)-2-(6-bromanyl-3-oxidanylidene-1H-isoindol-2-yl)-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]propanoyl]amino]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.67 _cell.angle_beta 104.39 _cell.angle_gamma 101.55 _cell.entry_id 8AAP _cell.length_a 29.433 _cell.length_b 56.822 _cell.length_c 56.933 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H24 Br F N2 O5' _chem_comp.formula_weight 567.403 _chem_comp.id LLV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[(2S)-2-(6-bromanyl-3-oxidanylidene-1H-isoindol-2-yl)-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]propanoyl]amino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 LLV sing 194 n n O C1 LLV doub 195 n n C1 C2 LLV sing 196 n n C2 C27 LLV doub 197 n y C2 C3 LLV sing 198 n y C27 C6 LLV sing 199 n y C3 C4 LLV doub 200 n y O3 C16 LLV doub 201 n n C15 C14 LLV sing 202 n n C26 C25 LLV doub 203 n y C26 C7 LLV sing 204 n y C6 C5 LLV doub 205 n y C6 C7 LLV sing 206 n n C4 C5 LLV sing 207 n y C16 O2 LLV sing 208 n n C16 C14 LLV sing 209 n n C25 C10 LLV sing 210 n y O4 C24 LLV doub 211 n n C5 F LLV sing 212 n n C14 N LLV sing 213 n n C7 C8 LLV doub 214 n y N C13 LLV sing 215 n n C24 N1 LLV sing 216 n n C24 C23 LLV sing 217 n n C12 C13 LLV sing 218 n n C12 N1 LLV sing 219 n n C12 C11 LLV sing 220 n n C10 C11 LLV sing 221 n n C10 C9 LLV doub 222 n y C13 O1 LLV doub 223 n n C8 C9 LLV sing 224 n y N1 C17 LLV sing 225 n n C22 C23 LLV doub 226 n y C22 C21 LLV sing 227 n y C23 C18 LLV sing 228 n y C21 C20 LLV doub 229 n y C17 C18 LLV sing 230 n n C18 C19 LLV doub 231 n y C20 C19 LLV sing 232 n y C20 BR LLV sing 233 n n C3 H1 LLV sing 234 n n C4 H2 LLV sing 235 n n C8 H3 LLV sing 236 n n C9 H4 LLV sing 237 n n C11 H5 LLV sing 238 n n C11 H6 LLV sing 239 n n C22 H7 LLV sing 240 n n C21 H8 LLV sing 241 n n C19 H9 LLV sing 242 n n C17 H10 LLV sing 243 n n C17 H11 LLV sing 244 n n C12 H12 LLV sing 245 n n N H13 LLV sing 246 n n C14 H14 LLV sing 247 n n O2 H15 LLV sing 248 n n C15 H16 LLV sing 249 n n C15 H17 LLV sing 250 n n C15 H18 LLV sing 251 n n C25 H19 LLV sing 252 n n C26 H20 LLV sing 253 n n C27 H21 LLV sing 254 n n C H22 LLV sing 255 n n C H23 LLV sing 256 n n C H24 LLV sing 257 n n # _atom_sites.entry_id 8AAP _atom_sites.fract_transf_matrix[1][1] 0.033975 _atom_sites.fract_transf_matrix[1][2] 0.006943 _atom_sites.fract_transf_matrix[1][3] 0.012639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017963 _atom_sites.fract_transf_matrix[2][3] 0.008006 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LLV A 1 301 301 LLV 613 . D 2 LLV B 1 301 301 LLV 613 . E 3 HOH A 1 401 44 HOH HOH . E 3 HOH A 2 402 17 HOH HOH . E 3 HOH A 3 403 36 HOH HOH . E 3 HOH A 4 404 111 HOH HOH . E 3 HOH A 5 405 76 HOH HOH . E 3 HOH A 6 406 110 HOH HOH . E 3 HOH A 7 407 28 HOH HOH . E 3 HOH A 8 408 75 HOH HOH . E 3 HOH A 9 409 96 HOH HOH . E 3 HOH A 10 410 4 HOH HOH . E 3 HOH A 11 411 73 HOH HOH . E 3 HOH A 12 412 86 HOH HOH . E 3 HOH A 13 413 37 HOH HOH . E 3 HOH A 14 414 24 HOH HOH . E 3 HOH A 15 415 18 HOH HOH . E 3 HOH A 16 416 112 HOH HOH . E 3 HOH A 17 417 14 HOH HOH . E 3 HOH A 18 418 74 HOH HOH . E 3 HOH A 19 419 88 HOH HOH . E 3 HOH A 20 420 7 HOH HOH . E 3 HOH A 21 421 68 HOH HOH . E 3 HOH A 22 422 67 HOH HOH . E 3 HOH A 23 423 35 HOH HOH . E 3 HOH A 24 424 49 HOH HOH . E 3 HOH A 25 425 50 HOH HOH . E 3 HOH A 26 426 77 HOH HOH . E 3 HOH A 27 427 70 HOH HOH . E 3 HOH A 28 428 46 HOH HOH . E 3 HOH A 29 429 95 HOH HOH . E 3 HOH A 30 430 100 HOH HOH . E 3 HOH A 31 431 72 HOH HOH . E 3 HOH A 32 432 23 HOH HOH . E 3 HOH A 33 433 40 HOH HOH . E 3 HOH A 34 434 108 HOH HOH . E 3 HOH A 35 435 103 HOH HOH . E 3 HOH A 36 436 34 HOH HOH . E 3 HOH A 37 437 45 HOH HOH . E 3 HOH A 38 438 85 HOH HOH . E 3 HOH A 39 439 65 HOH HOH . E 3 HOH A 40 440 101 HOH HOH . E 3 HOH A 41 441 54 HOH HOH . F 3 HOH B 1 401 3 HOH HOH . F 3 HOH B 2 402 97 HOH HOH . F 3 HOH B 3 403 39 HOH HOH . F 3 HOH B 4 404 13 HOH HOH . F 3 HOH B 5 405 99 HOH HOH . F 3 HOH B 6 406 80 HOH HOH . F 3 HOH B 7 407 29 HOH HOH . F 3 HOH B 8 408 55 HOH HOH . F 3 HOH B 9 409 63 HOH HOH . F 3 HOH B 10 410 84 HOH HOH . F 3 HOH B 11 411 64 HOH HOH . F 3 HOH B 12 412 87 HOH HOH . F 3 HOH B 13 413 105 HOH HOH . F 3 HOH B 14 414 69 HOH HOH . F 3 HOH B 15 415 114 HOH HOH . F 3 HOH B 16 416 47 HOH HOH . F 3 HOH B 17 417 102 HOH HOH . F 3 HOH B 18 418 1 HOH HOH . F 3 HOH B 19 419 91 HOH HOH . F 3 HOH B 20 420 56 HOH HOH . F 3 HOH B 21 421 42 HOH HOH . F 3 HOH B 22 422 61 HOH HOH . F 3 HOH B 23 423 92 HOH HOH . F 3 HOH B 24 424 106 HOH HOH . F 3 HOH B 25 425 79 HOH HOH . F 3 HOH B 26 426 52 HOH HOH . F 3 HOH B 27 427 94 HOH HOH . F 3 HOH B 28 428 38 HOH HOH . F 3 HOH B 29 429 83 HOH HOH . F 3 HOH B 30 430 89 HOH HOH . F 3 HOH B 31 431 113 HOH HOH . F 3 HOH B 32 432 51 HOH HOH . F 3 HOH B 33 433 81 HOH HOH . F 3 HOH B 34 434 107 HOH HOH . F 3 HOH B 35 435 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LLV . . . C 2 16.818 -10.016 -6.399 0.7 59.71 ? C1 LLV 301 A 1 HETATM 2 N N1 LLV . . . C 2 21.491 -1.505 -1.64 0.7 55.15 ? N1 LLV 301 A 1 HETATM 3 C C2 LLV . . . C 2 17.859 -10.051 -5.333 0.7 59.4 ? C2 LLV 301 A 1 HETATM 4 C C3 LLV . . . C 2 18.224 -11.271 -4.774 0.7 59.48 ? C3 LLV 301 A 1 HETATM 5 C C4 LLV . . . C 2 19.196 -11.335 -3.796 0.7 59.73 ? C4 LLV 301 A 1 HETATM 6 C C5 LLV . . . C 2 19.778 -10.169 -3.369 0.7 59.87 ? C5 LLV 301 A 1 HETATM 7 C C6 LLV . . . C 2 19.427 -8.921 -3.869 0.7 58.83 ? C6 LLV 301 A 1 HETATM 8 C C7 LLV . . . C 2 19.927 -7.648 -3.278 0.7 57.56 ? C7 LLV 301 A 1 HETATM 9 C C8 LLV . . . C 2 20.146 -7.532 -1.909 0.7 56.69 ? C8 LLV 301 A 1 HETATM 10 C C9 LLV . . . C 2 20.627 -6.359 -1.358 0.7 56.17 ? C9 LLV 301 A 1 HETATM 11 C C10 LLV . . . C 2 20.9 -5.258 -2.152 0.7 55.89 ? C10 LLV 301 A 1 HETATM 12 C C11 LLV . . . C 2 21.432 -3.984 -1.544 0.7 55.05 ? C11 LLV 301 A 1 HETATM 13 O O4 LLV . . . C 2 22.842 -0.942 -3.392 0.7 54.69 ? O4 LLV 301 A 1 HETATM 14 C C24 LLV . . . C 2 22.427 -0.747 -2.27 0.7 55.19 ? C24 LLV 301 A 1 HETATM 15 C C23 LLV . . . C 2 22.826 0.302 -1.31 0.7 56.19 ? C23 LLV 301 A 1 HETATM 16 C C22 LLV . . . C 2 23.77 1.316 -1.409 0.7 57.29 ? C22 LLV 301 A 1 HETATM 17 C C21 LLV . . . C 2 23.983 2.155 -0.332 0.7 58.66 ? C21 LLV 301 A 1 HETATM 18 C C20 LLV . . . C 2 23.257 1.962 0.827 0.7 60.39 ? C20 LLV 301 A 1 HETATM 19 BR BR LLV . . . C 2 23.746 2.919 2.383 0.7 64.73 ? BR LLV 301 A 1 HETATM 20 C C19 LLV . . . C 2 22.286 0.99 0.927 0.7 58.17 ? C19 LLV 301 A 1 HETATM 21 C C18 LLV . . . C 2 22.089 0.146 -0.152 0.7 56.54 ? C18 LLV 301 A 1 HETATM 22 C C17 LLV . . . C 2 21.173 -1.029 -0.292 0.7 55.64 ? C17 LLV 301 A 1 HETATM 23 C C12 LLV . . . C 2 20.924 -2.703 -2.231 0.7 54.63 ? C12 LLV 301 A 1 HETATM 24 C C13 LLV . . . C 2 19.409 -2.549 -2.135 0.7 53.66 ? C13 LLV 301 A 1 HETATM 25 N N LLV . . . C 2 18.801 -2.104 -3.239 0.7 53.17 ? N LLV 301 A 1 HETATM 26 C C14 LLV . . . C 2 17.354 -2.07 -3.344 0.7 52.95 ? C14 LLV 301 A 1 HETATM 27 C C16 LLV . . . C 2 16.75 -3.414 -3.716 0.7 53.38 ? C16 LLV 301 A 1 HETATM 28 O O3 LLV . . . C 2 17.489 -4.203 -4.463 0.7 53.17 ? O3 LLV 301 A 1 HETATM 29 O O2 LLV . . . C 2 15.623 -3.687 -3.36 0.7 53.86 ? O2 LLV 301 A 1 HETATM 30 C C15 LLV . . . C 2 16.917 -1.035 -4.361 0.7 52.79 ? C15 LLV 301 A 1 HETATM 31 O O1 LLV . . . C 2 18.807 -2.823 -1.1 0.7 53.18 ? O1 LLV 301 A 1 HETATM 32 C C25 LLV . . . C 2 20.672 -5.363 -3.517 0.7 56.4 ? C25 LLV 301 A 1 HETATM 33 C C26 LLV . . . C 2 20.193 -6.536 -4.072 0.7 56.96 ? C26 LLV 301 A 1 HETATM 34 F F LLV . . . C 2 20.742 -10.252 -2.425 0.7 60.89 ? F LLV 301 A 1 HETATM 35 C C27 LLV . . . C 2 18.47 -8.879 -4.885 0.7 59.03 ? C27 LLV 301 A 1 HETATM 36 O O LLV . . . C 2 16.008 -9.1 -6.441 0.7 59.7 ? O LLV 301 A 1 HETATM 37 C C LLV . . . C 2 16.732 -11.151 -7.371 0.7 59.94 ? C LLV 301 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 776 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #