data_8AAP # _model_server_result.job_id ey2-GgTKsP0O8np6acaf4g _model_server_result.datetime_utc '2025-06-28 17:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8AAP # _exptl.entry_id 8AAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 567.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[(2S)-2-(6-bromanyl-3-oxidanylidene-1H-isoindol-2-yl)-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]propanoyl]amino]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.67 _cell.angle_beta 104.39 _cell.angle_gamma 101.55 _cell.entry_id 8AAP _cell.length_a 29.433 _cell.length_b 56.822 _cell.length_c 56.933 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H24 Br F N2 O5' _chem_comp.formula_weight 567.403 _chem_comp.id LLV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[(2S)-2-(6-bromanyl-3-oxidanylidene-1H-isoindol-2-yl)-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]propanoyl]amino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 LLV sing 194 n n O C1 LLV doub 195 n n C1 C2 LLV sing 196 n n C2 C27 LLV doub 197 n y C2 C3 LLV sing 198 n y C27 C6 LLV sing 199 n y C3 C4 LLV doub 200 n y O3 C16 LLV doub 201 n n C15 C14 LLV sing 202 n n C26 C25 LLV doub 203 n y C26 C7 LLV sing 204 n y C6 C5 LLV doub 205 n y C6 C7 LLV sing 206 n n C4 C5 LLV sing 207 n y C16 O2 LLV sing 208 n n C16 C14 LLV sing 209 n n C25 C10 LLV sing 210 n y O4 C24 LLV doub 211 n n C5 F LLV sing 212 n n C14 N LLV sing 213 n n C7 C8 LLV doub 214 n y N C13 LLV sing 215 n n C24 N1 LLV sing 216 n n C24 C23 LLV sing 217 n n C12 C13 LLV sing 218 n n C12 N1 LLV sing 219 n n C12 C11 LLV sing 220 n n C10 C11 LLV sing 221 n n C10 C9 LLV doub 222 n y C13 O1 LLV doub 223 n n C8 C9 LLV sing 224 n y N1 C17 LLV sing 225 n n C22 C23 LLV doub 226 n y C22 C21 LLV sing 227 n y C23 C18 LLV sing 228 n y C21 C20 LLV doub 229 n y C17 C18 LLV sing 230 n n C18 C19 LLV doub 231 n y C20 C19 LLV sing 232 n y C20 BR LLV sing 233 n n C3 H1 LLV sing 234 n n C4 H2 LLV sing 235 n n C8 H3 LLV sing 236 n n C9 H4 LLV sing 237 n n C11 H5 LLV sing 238 n n C11 H6 LLV sing 239 n n C22 H7 LLV sing 240 n n C21 H8 LLV sing 241 n n C19 H9 LLV sing 242 n n C17 H10 LLV sing 243 n n C17 H11 LLV sing 244 n n C12 H12 LLV sing 245 n n N H13 LLV sing 246 n n C14 H14 LLV sing 247 n n O2 H15 LLV sing 248 n n C15 H16 LLV sing 249 n n C15 H17 LLV sing 250 n n C15 H18 LLV sing 251 n n C25 H19 LLV sing 252 n n C26 H20 LLV sing 253 n n C27 H21 LLV sing 254 n n C H22 LLV sing 255 n n C H23 LLV sing 256 n n C H24 LLV sing 257 n n # _atom_sites.entry_id 8AAP _atom_sites.fract_transf_matrix[1][1] 0.033975 _atom_sites.fract_transf_matrix[1][2] 0.006943 _atom_sites.fract_transf_matrix[1][3] 0.012639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017963 _atom_sites.fract_transf_matrix[2][3] 0.008006 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LLV A 1 301 301 LLV 613 . D 2 LLV B 1 301 301 LLV 613 . E 3 HOH A 1 401 44 HOH HOH . E 3 HOH A 2 402 17 HOH HOH . E 3 HOH A 3 403 36 HOH HOH . E 3 HOH A 4 404 111 HOH HOH . E 3 HOH A 5 405 76 HOH HOH . E 3 HOH A 6 406 110 HOH HOH . E 3 HOH A 7 407 28 HOH HOH . E 3 HOH A 8 408 75 HOH HOH . E 3 HOH A 9 409 96 HOH HOH . E 3 HOH A 10 410 4 HOH HOH . E 3 HOH A 11 411 73 HOH HOH . E 3 HOH A 12 412 86 HOH HOH . E 3 HOH A 13 413 37 HOH HOH . E 3 HOH A 14 414 24 HOH HOH . E 3 HOH A 15 415 18 HOH HOH . E 3 HOH A 16 416 112 HOH HOH . E 3 HOH A 17 417 14 HOH HOH . E 3 HOH A 18 418 74 HOH HOH . E 3 HOH A 19 419 88 HOH HOH . E 3 HOH A 20 420 7 HOH HOH . E 3 HOH A 21 421 68 HOH HOH . E 3 HOH A 22 422 67 HOH HOH . E 3 HOH A 23 423 35 HOH HOH . E 3 HOH A 24 424 49 HOH HOH . E 3 HOH A 25 425 50 HOH HOH . E 3 HOH A 26 426 77 HOH HOH . E 3 HOH A 27 427 70 HOH HOH . E 3 HOH A 28 428 46 HOH HOH . E 3 HOH A 29 429 95 HOH HOH . E 3 HOH A 30 430 100 HOH HOH . E 3 HOH A 31 431 72 HOH HOH . E 3 HOH A 32 432 23 HOH HOH . E 3 HOH A 33 433 40 HOH HOH . E 3 HOH A 34 434 108 HOH HOH . E 3 HOH A 35 435 103 HOH HOH . E 3 HOH A 36 436 34 HOH HOH . E 3 HOH A 37 437 45 HOH HOH . E 3 HOH A 38 438 85 HOH HOH . E 3 HOH A 39 439 65 HOH HOH . E 3 HOH A 40 440 101 HOH HOH . E 3 HOH A 41 441 54 HOH HOH . F 3 HOH B 1 401 3 HOH HOH . F 3 HOH B 2 402 97 HOH HOH . F 3 HOH B 3 403 39 HOH HOH . F 3 HOH B 4 404 13 HOH HOH . F 3 HOH B 5 405 99 HOH HOH . F 3 HOH B 6 406 80 HOH HOH . F 3 HOH B 7 407 29 HOH HOH . F 3 HOH B 8 408 55 HOH HOH . F 3 HOH B 9 409 63 HOH HOH . F 3 HOH B 10 410 84 HOH HOH . F 3 HOH B 11 411 64 HOH HOH . F 3 HOH B 12 412 87 HOH HOH . F 3 HOH B 13 413 105 HOH HOH . F 3 HOH B 14 414 69 HOH HOH . F 3 HOH B 15 415 114 HOH HOH . F 3 HOH B 16 416 47 HOH HOH . F 3 HOH B 17 417 102 HOH HOH . F 3 HOH B 18 418 1 HOH HOH . F 3 HOH B 19 419 91 HOH HOH . F 3 HOH B 20 420 56 HOH HOH . F 3 HOH B 21 421 42 HOH HOH . F 3 HOH B 22 422 61 HOH HOH . F 3 HOH B 23 423 92 HOH HOH . F 3 HOH B 24 424 106 HOH HOH . F 3 HOH B 25 425 79 HOH HOH . F 3 HOH B 26 426 52 HOH HOH . F 3 HOH B 27 427 94 HOH HOH . F 3 HOH B 28 428 38 HOH HOH . F 3 HOH B 29 429 83 HOH HOH . F 3 HOH B 30 430 89 HOH HOH . F 3 HOH B 31 431 113 HOH HOH . F 3 HOH B 32 432 51 HOH HOH . F 3 HOH B 33 433 81 HOH HOH . F 3 HOH B 34 434 107 HOH HOH . F 3 HOH B 35 435 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LLV . . . D 2 16.989 31.268 -37.651 0.87 56.73 ? C1 LLV 301 B 1 HETATM 2 N N1 LLV . . . D 2 21.12 22.418 -42.233 0.87 54.15 ? N1 LLV 301 B 1 HETATM 3 C C2 LLV . . . D 2 18.169 31.237 -38.564 0.87 56.79 ? C2 LLV 301 B 1 HETATM 4 C C3 LLV . . . D 2 18.957 32.374 -38.737 0.87 57.23 ? C3 LLV 301 B 1 HETATM 5 C C4 LLV . . . D 2 20.099 32.329 -39.514 0.87 57.6 ? C4 LLV 301 B 1 HETATM 6 C C5 LLV . . . D 2 20.433 31.147 -40.126 0.87 57.84 ? C5 LLV 301 B 1 HETATM 7 C C6 LLV . . . D 2 19.674 29.988 -39.999 0.87 56.21 ? C6 LLV 301 B 1 HETATM 8 C C7 LLV . . . D 2 20.063 28.686 -40.605 0.87 54.75 ? C7 LLV 301 B 1 HETATM 9 C C8 LLV . . . D 2 20.335 28.572 -41.966 0.87 54.32 ? C8 LLV 301 B 1 HETATM 10 C C9 LLV . . . D 2 20.683 27.355 -42.526 0.87 54.14 ? C9 LLV 301 B 1 HETATM 11 C C10 LLV . . . D 2 20.786 26.212 -41.744 0.87 53.83 ? C10 LLV 301 B 1 HETATM 12 C C11 LLV . . . D 2 21.225 24.899 -42.345 0.87 53.62 ? C11 LLV 301 B 1 HETATM 13 O O4 LLV . . . D 2 22.514 21.828 -40.528 0.87 54.17 ? O4 LLV 301 B 1 HETATM 14 C C24 LLV . . . D 2 22.094 21.671 -41.652 0.87 54.66 ? C24 LLV 301 B 1 HETATM 15 C C23 LLV . . . D 2 22.462 20.631 -42.637 0.87 56.2 ? C23 LLV 301 B 1 HETATM 16 C C22 LLV . . . D 2 23.448 19.652 -42.6 0.87 57.39 ? C22 LLV 301 B 1 HETATM 17 C C21 LLV . . . D 2 23.618 18.817 -43.687 0.87 59.53 ? C21 LLV 301 B 1 HETATM 18 C C20 LLV . . . D 2 22.812 18.982 -44.799 0.87 62.1 ? C20 LLV 301 B 1 HETATM 19 BR BR LLV . . . D 2 23.179 17.963 -46.354 0.87 68.18 ? BR LLV 301 B 1 HETATM 20 C C19 LLV . . . D 2 21.816 19.935 -44.846 0.87 58.93 ? C19 LLV 301 B 1 HETATM 21 C C18 LLV . . . D 2 21.652 20.767 -43.749 0.87 56.62 ? C18 LLV 301 B 1 HETATM 22 C C17 LLV . . . D 2 20.703 21.906 -43.542 0.87 55.17 ? C17 LLV 301 B 1 HETATM 23 C C12 LLV . . . D 2 20.638 23.655 -41.646 0.87 53.47 ? C12 LLV 301 B 1 HETATM 24 C C13 LLV . . . D 2 19.115 23.638 -41.697 0.87 53.24 ? C13 LLV 301 B 1 HETATM 25 N N LLV . . . D 2 18.493 23.208 -40.597 0.87 53.82 ? N LLV 301 B 1 HETATM 26 C C14 LLV . . . D 2 17.047 23.279 -40.482 0.87 54.3 ? C14 LLV 301 B 1 HETATM 27 C C16 LLV . . . D 2 16.525 24.666 -40.155 0.87 55.11 ? C16 LLV 301 B 1 HETATM 28 O O3 LLV . . . D 2 17.343 25.478 -39.523 0.87 55.37 ? O3 LLV 301 B 1 HETATM 29 O O2 LLV . . . D 2 15.386 24.948 -40.444 0.87 55.55 ? O2 LLV 301 B 1 HETATM 30 C C15 LLV . . . D 2 16.546 22.305 -39.443 0.87 54.41 ? C15 LLV 301 B 1 HETATM 31 O O1 LLV . . . D 2 18.519 24.027 -42.692 0.87 53.21 ? O1 LLV 301 B 1 HETATM 32 C C25 LLV . . . D 2 20.513 26.322 -40.389 0.87 53.6 ? C25 LLV 301 B 1 HETATM 33 C C26 LLV . . . D 2 20.153 27.533 -39.83 0.87 54.02 ? C26 LLV 301 B 1 HETATM 34 F F LLV . . . D 2 21.564 31.118 -40.877 0.87 59.09 ? F LLV 301 B 1 HETATM 35 C C27 LLV . . . D 2 18.526 30.051 -39.206 0.87 56.18 ? C27 LLV 301 B 1 HETATM 36 O O LLV . . . D 2 16.253 30.303 -37.567 0.87 56.34 ? O LLV 301 B 1 HETATM 37 C C LLV . . . D 2 16.728 32.496 -36.832 0.87 56.91 ? C LLV 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #