data_8AAZ # _model_server_result.job_id pcaMjdfWRA0LpdLzaxf3nw _model_server_result.datetime_utc '2024-10-19 16:30:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8AAZ # _exptl.entry_id 8AAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AAZ _cell.length_a 78.389 _cell.length_b 78.389 _cell.length_c 38.114 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8AAZ _atom_sites.fract_transf_matrix[1][1] 0.012757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 201 201 ATP ATP . C 2 ATP A 1 202 202 ATP ATP . D 2 ATP A 1 203 203 ATP ATP . E 3 HOH A 1 301 96 HOH HOH . E 3 HOH A 2 302 228 HOH HOH . E 3 HOH A 3 303 123 HOH HOH . E 3 HOH A 4 304 207 HOH HOH . E 3 HOH A 5 305 159 HOH HOH . E 3 HOH A 6 306 52 HOH HOH . E 3 HOH A 7 307 6 HOH HOH . E 3 HOH A 8 308 117 HOH HOH . E 3 HOH A 9 309 83 HOH HOH . E 3 HOH A 10 310 282 HOH HOH . E 3 HOH A 11 311 63 HOH HOH . E 3 HOH A 12 312 66 HOH HOH . E 3 HOH A 13 313 106 HOH HOH . E 3 HOH A 14 314 67 HOH HOH . E 3 HOH A 15 315 108 HOH HOH . E 3 HOH A 16 316 154 HOH HOH . E 3 HOH A 17 317 51 HOH HOH . E 3 HOH A 18 318 38 HOH HOH . E 3 HOH A 19 319 39 HOH HOH . E 3 HOH A 20 320 45 HOH HOH . E 3 HOH A 21 321 69 HOH HOH . E 3 HOH A 22 322 97 HOH HOH . E 3 HOH A 23 323 169 HOH HOH . E 3 HOH A 24 324 50 HOH HOH . E 3 HOH A 25 325 48 HOH HOH . E 3 HOH A 26 326 281 HOH HOH . E 3 HOH A 27 327 7 HOH HOH . E 3 HOH A 28 328 37 HOH HOH . E 3 HOH A 29 329 27 HOH HOH . E 3 HOH A 30 330 98 HOH HOH . E 3 HOH A 31 331 79 HOH HOH . E 3 HOH A 32 332 42 HOH HOH . E 3 HOH A 33 333 80 HOH HOH . E 3 HOH A 34 334 16 HOH HOH . E 3 HOH A 35 335 22 HOH HOH . E 3 HOH A 36 336 61 HOH HOH . E 3 HOH A 37 337 8 HOH HOH . E 3 HOH A 38 338 49 HOH HOH . E 3 HOH A 39 339 43 HOH HOH . E 3 HOH A 40 340 33 HOH HOH . E 3 HOH A 41 341 84 HOH HOH . E 3 HOH A 42 342 34 HOH HOH . E 3 HOH A 43 343 60 HOH HOH . E 3 HOH A 44 344 72 HOH HOH . E 3 HOH A 45 345 112 HOH HOH . E 3 HOH A 46 346 11 HOH HOH . E 3 HOH A 47 347 31 HOH HOH . E 3 HOH A 48 348 9 HOH HOH . E 3 HOH A 49 349 88 HOH HOH . E 3 HOH A 50 350 54 HOH HOH . E 3 HOH A 51 351 1 HOH HOH . E 3 HOH A 52 352 12 HOH HOH . E 3 HOH A 53 353 53 HOH HOH . E 3 HOH A 54 354 41 HOH HOH . E 3 HOH A 55 355 4 HOH HOH . E 3 HOH A 56 356 155 HOH HOH . E 3 HOH A 57 357 13 HOH HOH . E 3 HOH A 58 358 140 HOH HOH . E 3 HOH A 59 359 44 HOH HOH . E 3 HOH A 60 360 71 HOH HOH . E 3 HOH A 61 361 65 HOH HOH . E 3 HOH A 62 362 25 HOH HOH . E 3 HOH A 63 363 68 HOH HOH . E 3 HOH A 64 364 89 HOH HOH . E 3 HOH A 65 365 30 HOH HOH . E 3 HOH A 66 366 32 HOH HOH . E 3 HOH A 67 367 113 HOH HOH . E 3 HOH A 68 368 185 HOH HOH . E 3 HOH A 69 369 200 HOH HOH . E 3 HOH A 70 370 40 HOH HOH . E 3 HOH A 71 371 24 HOH HOH . E 3 HOH A 72 372 116 HOH HOH . E 3 HOH A 73 373 46 HOH HOH . E 3 HOH A 74 374 76 HOH HOH . E 3 HOH A 75 375 110 HOH HOH . E 3 HOH A 76 376 152 HOH HOH . E 3 HOH A 77 377 70 HOH HOH . E 3 HOH A 78 378 115 HOH HOH . E 3 HOH A 79 379 125 HOH HOH . E 3 HOH A 80 380 74 HOH HOH . E 3 HOH A 81 381 118 HOH HOH . E 3 HOH A 82 382 173 HOH HOH . E 3 HOH A 83 383 14 HOH HOH . E 3 HOH A 84 384 121 HOH HOH . E 3 HOH A 85 385 18 HOH HOH . E 3 HOH A 86 386 55 HOH HOH . E 3 HOH A 87 387 165 HOH HOH . E 3 HOH A 88 388 19 HOH HOH . E 3 HOH A 89 389 64 HOH HOH . E 3 HOH A 90 390 90 HOH HOH . E 3 HOH A 91 391 104 HOH HOH . E 3 HOH A 92 392 196 HOH HOH . E 3 HOH A 93 393 180 HOH HOH . E 3 HOH A 94 394 105 HOH HOH . E 3 HOH A 95 395 114 HOH HOH . E 3 HOH A 96 396 102 HOH HOH . E 3 HOH A 97 397 107 HOH HOH . E 3 HOH A 98 398 82 HOH HOH . E 3 HOH A 99 399 28 HOH HOH . E 3 HOH A 100 400 10 HOH HOH . E 3 HOH A 101 401 109 HOH HOH . E 3 HOH A 102 402 143 HOH HOH . E 3 HOH A 103 403 23 HOH HOH . E 3 HOH A 104 404 175 HOH HOH . E 3 HOH A 105 405 26 HOH HOH . E 3 HOH A 106 406 199 HOH HOH . E 3 HOH A 107 407 58 HOH HOH . E 3 HOH A 108 408 263 HOH HOH . E 3 HOH A 109 409 17 HOH HOH . E 3 HOH A 110 410 128 HOH HOH . E 3 HOH A 111 411 20 HOH HOH . E 3 HOH A 112 412 35 HOH HOH . E 3 HOH A 113 413 170 HOH HOH . E 3 HOH A 114 414 216 HOH HOH . E 3 HOH A 115 415 127 HOH HOH . E 3 HOH A 116 416 186 HOH HOH . E 3 HOH A 117 417 47 HOH HOH . E 3 HOH A 118 418 75 HOH HOH . E 3 HOH A 119 419 158 HOH HOH . E 3 HOH A 120 420 29 HOH HOH . E 3 HOH A 121 421 101 HOH HOH . E 3 HOH A 122 422 92 HOH HOH . E 3 HOH A 123 423 275 HOH HOH . E 3 HOH A 124 424 177 HOH HOH . E 3 HOH A 125 425 59 HOH HOH . E 3 HOH A 126 426 93 HOH HOH . E 3 HOH A 127 427 56 HOH HOH . E 3 HOH A 128 428 234 HOH HOH . E 3 HOH A 129 429 94 HOH HOH . E 3 HOH A 130 430 172 HOH HOH . E 3 HOH A 131 431 36 HOH HOH . E 3 HOH A 132 432 81 HOH HOH . E 3 HOH A 133 433 21 HOH HOH . E 3 HOH A 134 434 274 HOH HOH . E 3 HOH A 135 435 226 HOH HOH . E 3 HOH A 136 436 241 HOH HOH . E 3 HOH A 137 437 279 HOH HOH . E 3 HOH A 138 438 148 HOH HOH . E 3 HOH A 139 439 190 HOH HOH . E 3 HOH A 140 440 146 HOH HOH . E 3 HOH A 141 441 130 HOH HOH . E 3 HOH A 142 442 91 HOH HOH . E 3 HOH A 143 443 131 HOH HOH . E 3 HOH A 144 444 230 HOH HOH . E 3 HOH A 145 445 256 HOH HOH . E 3 HOH A 146 446 134 HOH HOH . E 3 HOH A 147 447 133 HOH HOH . E 3 HOH A 148 448 138 HOH HOH . E 3 HOH A 149 449 139 HOH HOH . E 3 HOH A 150 450 137 HOH HOH . E 3 HOH A 151 451 136 HOH HOH . E 3 HOH A 152 452 244 HOH HOH . E 3 HOH A 153 453 245 HOH HOH . E 3 HOH A 154 454 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 -10.18 -9.216 -16.147 0.79 64.53 ? PG ATP 203 A 1 HETATM 2 O O1G ATP . . . D 2 -10.963 -8.039 -15.675 0.79 65.47 ? O1G ATP 203 A 1 HETATM 3 O O2G ATP . . . D 2 -9.021 -8.858 -17.1 0.79 64.85 ? O2G ATP 203 A 1 HETATM 4 O O3G ATP . . . D 2 -11.042 -10.304 -16.805 0.79 65.08 ? O3G ATP 203 A 1 HETATM 5 P PB ATP . . . D 2 -8.483 -11.162 -14.636 0.79 60.52 ? PB ATP 203 A 1 HETATM 6 O O1B ATP . . . D 2 -9.108 -12.456 -14.968 0.79 60.23 ? O1B ATP 203 A 1 HETATM 7 O O2B ATP . . . D 2 -7.179 -10.835 -15.361 0.79 60.42 ? O2B ATP 203 A 1 HETATM 8 O O3B ATP . . . D 2 -9.472 -9.954 -14.914 0.79 62.86 ? O3B ATP 203 A 1 HETATM 9 P PA ATP . . . D 2 -6.959 -11.28 -12.097 0.79 60.68 ? PA ATP 203 A 1 HETATM 10 O O1A ATP . . . D 2 -5.951 -10.212 -12.244 0.79 60.58 ? O1A ATP 203 A 1 HETATM 11 O O2A ATP . . . D 2 -6.43 -12.684 -12.396 0.79 59.94 ? O2A ATP 203 A 1 HETATM 12 O O3A ATP . . . D 2 -8.198 -11.03 -13.075 0.79 60.35 ? O3A ATP 203 A 1 HETATM 13 O O5' ATP . . . D 2 -7.593 -11.295 -10.651 0.79 63.36 ? O5' ATP 203 A 1 HETATM 14 C C5' ATP . . . D 2 -7.812 -10.073 -9.916 0.79 66.06 ? C5' ATP 203 A 1 HETATM 15 C C4' ATP . . . D 2 -6.725 -9.867 -8.891 0.79 68.71 ? C4' ATP 203 A 1 HETATM 16 O O4' ATP . . . D 2 -6.049 -11.12 -8.731 0.79 70.04 ? O4' ATP 203 A 1 HETATM 17 C C3' ATP . . . D 2 -5.619 -8.979 -9.442 0.79 69.85 ? C3' ATP 203 A 1 HETATM 18 O O3' ATP . . . D 2 -5.857 -7.683 -8.9 0.79 69.9 ? O3' ATP 203 A 1 HETATM 19 C C2' ATP . . . D 2 -4.359 -9.51 -8.744 0.79 70.68 ? C2' ATP 203 A 1 HETATM 20 O O2' ATP . . . D 2 -4.123 -8.642 -7.64 0.79 70.88 ? O2' ATP 203 A 1 HETATM 21 C C1' ATP . . . D 2 -4.833 -10.815 -8.096 0.79 71.02 ? C1' ATP 203 A 1 HETATM 22 N N9 ATP . . . D 2 -3.916 -11.914 -8.383 0.79 72.03 ? N9 ATP 203 A 1 HETATM 23 C C8 ATP . . . D 2 -4.228 -13.145 -8.9 0.79 72.52 ? C8 ATP 203 A 1 HETATM 24 N N7 ATP . . . D 2 -3.196 -13.939 -9.053 0.79 72.71 ? N7 ATP 203 A 1 HETATM 25 C C5 ATP . . . D 2 -2.127 -13.178 -8.603 0.79 72.48 ? C5 ATP 203 A 1 HETATM 26 C C6 ATP . . . D 2 -0.747 -13.442 -8.502 0.79 72.22 ? C6 ATP 203 A 1 HETATM 27 N N6 ATP . . . D 2 -0.182 -14.598 -8.865 0.79 72.25 ? N6 ATP 203 A 1 HETATM 28 N N1 ATP . . . D 2 0.047 -12.464 -8.01 0.79 72.01 ? N1 ATP 203 A 1 HETATM 29 C C2 ATP . . . D 2 -0.51 -11.306 -7.648 0.79 72.03 ? C2 ATP 203 A 1 HETATM 30 N N3 ATP . . . D 2 -1.795 -10.944 -7.698 0.79 72.18 ? N3 ATP 203 A 1 HETATM 31 C C4 ATP . . . D 2 -2.556 -11.928 -8.187 0.79 72.28 ? C4 ATP 203 A 1 HETATM 32 H "H5'1" ATP . . . D 2 -8.67 -10.121 -9.464 0.79 79.27 ? "H5'1" ATP 203 A 1 HETATM 33 H "H5'2" ATP . . . D 2 -7.813 -9.324 -10.533 0.79 79.27 ? "H5'2" ATP 203 A 1 HETATM 34 H H4' ATP . . . D 2 -7.081 -9.548 -8.047 0.79 82.46 ? H4' ATP 203 A 1 HETATM 35 H H3' ATP . . . D 2 -5.555 -9.043 -10.407 0.79 83.82 ? H3' ATP 203 A 1 HETATM 36 H HO3' ATP . . . D 2 -5.886 -7.143 -9.555 0.79 83.89 ? HO3' ATP 203 A 1 HETATM 37 H H2' ATP . . . D 2 -3.636 -9.652 -9.374 0.79 84.82 ? H2' ATP 203 A 1 HETATM 38 H HO2' ATP . . . D 2 -3.377 -8.263 -7.78 0.79 85.05 ? HO2' ATP 203 A 1 HETATM 39 H H1' ATP . . . D 2 -4.969 -10.708 -7.142 0.79 85.23 ? H1' ATP 203 A 1 HETATM 40 H H8 ATP . . . D 2 -5.096 -13.395 -9.123 0.79 87.02 ? H8 ATP 203 A 1 HETATM 41 H HN61 ATP . . . D 2 -0.67 -15.291 -9.006 0.79 86.7 ? HN61 ATP 203 A 1 HETATM 42 H HN62 ATP . . . D 2 0.672 -14.646 -8.962 0.79 86.7 ? HN62 ATP 203 A 1 HETATM 43 H H2 ATP . . . D 2 0.076 -10.664 -7.317 0.79 86.44 ? H2 ATP 203 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #