data_8AB8 # _model_server_result.job_id EiuFrfycqAnyFlt5OstlkQ _model_server_result.datetime_utc '2024-11-28 14:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ab8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":401}' # _entry.id 8AB8 # _exptl.entry_id 8AB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 19 HA N N ? 19 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 441 n n FE NB HEC sing 442 n n FE NC HEC sing 443 n n FE ND HEC sing 444 n n CHA C1A HEC doub 445 n n CHA C4D HEC sing 446 n n CHA HHA HEC sing 447 n n CHB C4A HEC doub 448 n n CHB C1B HEC sing 449 n n CHB HHB HEC sing 450 n n CHC C4B HEC doub 451 n n CHC C1C HEC sing 452 n n CHC HHC HEC sing 453 n n CHD C4C HEC doub 454 n n CHD C1D HEC sing 455 n n CHD HHD HEC sing 456 n n NA C1A HEC sing 457 n y NA C4A HEC sing 458 n y C1A C2A HEC sing 459 n y C2A C3A HEC doub 460 n y C2A CAA HEC sing 461 n n C3A C4A HEC sing 462 n y C3A CMA HEC sing 463 n n CMA HMA1 HEC sing 464 n n CMA HMA2 HEC sing 465 n n CMA HMA3 HEC sing 466 n n CAA CBA HEC sing 467 n n CAA HAA1 HEC sing 468 n n CAA HAA2 HEC sing 469 n n CBA CGA HEC sing 470 n n CBA HBA1 HEC sing 471 n n CBA HBA2 HEC sing 472 n n CGA O1A HEC doub 473 n n CGA O2A HEC sing 474 n n O2A H2A HEC sing 475 n n NB C1B HEC sing 476 n y NB C4B HEC sing 477 n y C1B C2B HEC doub 478 n y C2B C3B HEC sing 479 n y C2B CMB HEC sing 480 n n C3B C4B HEC sing 481 n y C3B CAB HEC doub 482 e n CMB HMB1 HEC sing 483 n n CMB HMB2 HEC sing 484 n n CMB HMB3 HEC sing 485 n n CAB CBB HEC sing 486 n n CAB HAB HEC sing 487 n n CBB HBB1 HEC sing 488 n n CBB HBB2 HEC sing 489 n n CBB HBB3 HEC sing 490 n n NC C1C HEC sing 491 n y NC C4C HEC sing 492 n y C1C C2C HEC doub 493 n y C2C C3C HEC sing 494 n y C2C CMC HEC sing 495 n n C3C C4C HEC sing 496 n y C3C CAC HEC doub 497 e n CMC HMC1 HEC sing 498 n n CMC HMC2 HEC sing 499 n n CMC HMC3 HEC sing 500 n n CAC CBC HEC sing 501 n n CAC HAC HEC sing 502 n n CBC HBC1 HEC sing 503 n n CBC HBC2 HEC sing 504 n n CBC HBC3 HEC sing 505 n n ND C1D HEC sing 506 n y ND C4D HEC sing 507 n y C1D C2D HEC doub 508 n y C2D C3D HEC sing 509 n y C2D CMD HEC sing 510 n n C3D C4D HEC doub 511 n y C3D CAD HEC sing 512 n n CMD HMD1 HEC sing 513 n n CMD HMD2 HEC sing 514 n n CMD HMD3 HEC sing 515 n n CAD CBD HEC sing 516 n n CAD HAD1 HEC sing 517 n n CAD HAD2 HEC sing 518 n n CBD CGD HEC sing 519 n n CBD HBD1 HEC sing 520 n n CBD HBD2 HEC sing 521 n n CGD O1D HEC doub 522 n n CGD O2D HEC sing 523 n n O2D H2D HEC sing 524 n n # _atom_sites.entry_id 8AB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 DCQ C 1 507 904 DCQ DCQ . BA 17 FES P 1 301 301 FES FES . CA 15 LMT P 1 302 502 LMT LMT . DA 13 PTY P 1 303 504 PTY PTY . EA 14 CDL A 1 3001 3001 CDL CDL . FA 14 CDL A 1 3002 3101 CDL CDL . GA 18 XP4 A 1 3003 101 XP4 XP4 . HA 19 HEC D 1 401 401 HEC HEC . IA 14 CDL H 1 701 701 CDL CDL . JA 14 CDL H 1 702 101 CDL CDL . KA 12 PC1 I 1 201 201 PC1 PC1 . LA 15 LMT J 1 101 102 LMT LMT . MA 11 HEM N 1 501 501 HEM HEM . NA 11 HEM N 1 502 502 HEM HEM . OA 12 PC1 N 1 503 601 PC1 PC1 . PA 13 PTY N 1 504 801 PTY PTY . QA 14 CDL N 1 505 901 CDL CDL . RA 15 LMT N 1 506 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 18 XP4 L 1 3003 101 XP4 XP4 . WA 19 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 701 701 CDL CDL . YA 14 CDL S 1 702 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . HA 19 144.618 124.313 96.144 1 37.84 ? FE HEC 401 D 1 HETATM 2 C CHA HEC . . . HA 19 142.116 125.304 98.228 1 38.68 ? CHA HEC 401 D 1 HETATM 3 C CHB HEC . . . HA 19 146.408 123.117 98.792 1 36.46 ? CHB HEC 401 D 1 HETATM 4 C CHC HEC . . . HA 19 146.903 122.888 94.04 1 37.74 ? CHC HEC 401 D 1 HETATM 5 C CHD HEC . . . HA 19 143.045 125.82 93.437 1 37.07 ? CHD HEC 401 D 1 HETATM 6 N NA HEC . . . HA 19 144.301 124.203 98.199 1 37.86 ? NA HEC 401 D 1 HETATM 7 C C1A HEC . . . HA 19 143.239 124.626 98.884 1 38.58 ? C1A HEC 401 D 1 HETATM 8 C C2A HEC . . . HA 19 143.294 124.356 100.328 1 36.66 ? C2A HEC 401 D 1 HETATM 9 C C3A HEC . . . HA 19 144.582 123.704 100.484 1 36.84 ? C3A HEC 401 D 1 HETATM 10 C C4A HEC . . . HA 19 145.091 123.644 99.107 1 37.5 ? C4A HEC 401 D 1 HETATM 11 C CMA HEC . . . HA 19 145.25 123.212 101.721 1 36.25 ? CMA HEC 401 D 1 HETATM 12 C CAA HEC . . . HA 19 142.396 124.72 101.425 1 35.6 ? CAA HEC 401 D 1 HETATM 13 C CBA HEC . . . HA 19 141.085 124.023 101.333 1 40.09 ? CBA HEC 401 D 1 HETATM 14 C CGA HEC . . . HA 19 140.411 124.619 102.537 1 42.09 ? CGA HEC 401 D 1 HETATM 15 O O1A HEC . . . HA 19 140.004 125.806 102.469 1 43.45 ? O1A HEC 401 D 1 HETATM 16 O O2A HEC . . . HA 19 140.318 123.924 103.575 1 41.68 ? O2A HEC 401 D 1 HETATM 17 N NB HEC . . . HA 19 146.348 123.204 96.378 1 37.01 ? NB HEC 401 D 1 HETATM 18 C C1B HEC . . . HA 19 146.933 122.814 97.493 1 37.73 ? C1B HEC 401 D 1 HETATM 19 C C2B HEC . . . HA 19 148.153 122.022 97.383 1 39.59 ? C2B HEC 401 D 1 HETATM 20 C C3B HEC . . . HA 19 148.233 121.977 95.931 1 39.25 ? C3B HEC 401 D 1 HETATM 21 C C4B HEC . . . HA 19 147.11 122.713 95.446 1 38.19 ? C4B HEC 401 D 1 HETATM 22 C CMB HEC . . . HA 19 148.995 121.481 98.503 1 41.06 ? CMB HEC 401 D 1 HETATM 23 C CAB HEC . . . HA 19 149.112 121.326 94.985 1 40.27 ? CAB HEC 401 D 1 HETATM 24 C CBB HEC . . . HA 19 150.302 120.544 95.414 1 42.94 ? CBB HEC 401 D 1 HETATM 25 N NC HEC . . . HA 19 144.946 124.363 94.088 1 39.97 ? NC HEC 401 D 1 HETATM 26 C C1C HEC . . . HA 19 145.935 123.755 93.423 1 40.09 ? C1C HEC 401 D 1 HETATM 27 C C2C HEC . . . HA 19 145.922 123.976 91.967 1 41.23 ? C2C HEC 401 D 1 HETATM 28 C C3C HEC . . . HA 19 144.743 124.832 91.836 1 41.68 ? C3C HEC 401 D 1 HETATM 29 C C4C HEC . . . HA 19 144.24 125.034 93.171 1 40.04 ? C4C HEC 401 D 1 HETATM 30 C CMC HEC . . . HA 19 146.885 123.465 90.949 1 43.03 ? CMC HEC 401 D 1 HETATM 31 C CAC HEC . . . HA 19 144.112 125.43 90.667 1 41.47 ? CAC HEC 401 D 1 HETATM 32 C CBC HEC . . . HA 19 144.671 125.215 89.302 1 43.79 ? CBC HEC 401 D 1 HETATM 33 N ND HEC . . . HA 19 142.868 125.395 95.87 1 37.17 ? ND HEC 401 D 1 HETATM 34 C C1D HEC . . . HA 19 142.397 125.934 94.737 1 37.67 ? C1D HEC 401 D 1 HETATM 35 C C2D HEC . . . HA 19 141.126 126.631 94.89 1 37.72 ? C2D HEC 401 D 1 HETATM 36 C C3D HEC . . . HA 19 140.857 126.497 96.313 1 37.53 ? C3D HEC 401 D 1 HETATM 37 C C4D HEC . . . HA 19 141.993 125.72 96.82 1 38.08 ? C4D HEC 401 D 1 HETATM 38 C CMD HEC . . . HA 19 140.314 127.344 93.868 1 38.93 ? CMD HEC 401 D 1 HETATM 39 C CAD HEC . . . HA 19 139.709 127.038 97.058 1 39.67 ? CAD HEC 401 D 1 HETATM 40 C CBD HEC . . . HA 19 138.716 125.924 97.108 1 42.14 ? CBD HEC 401 D 1 HETATM 41 C CGD HEC . . . HA 19 137.49 126.368 97.842 1 45.31 ? CGD HEC 401 D 1 HETATM 42 O O1D HEC . . . HA 19 136.388 125.933 97.451 1 50.54 ? O1D HEC 401 D 1 HETATM 43 O O2D HEC . . . HA 19 137.607 127.133 98.82 1 48.93 ? O2D HEC 401 D 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #