data_8AB8 # _model_server_result.job_id b-BSiFscASDa29KEKOoNHg _model_server_result.datetime_utc '2024-11-28 14:35:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ab8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":401}' # _entry.id 8AB8 # _exptl.entry_id 8AB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 19 HA N N ? 19 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 441 n n FE NB HEC sing 442 n n FE NC HEC sing 443 n n FE ND HEC sing 444 n n CHA C1A HEC doub 445 n n CHA C4D HEC sing 446 n n CHA HHA HEC sing 447 n n CHB C4A HEC doub 448 n n CHB C1B HEC sing 449 n n CHB HHB HEC sing 450 n n CHC C4B HEC doub 451 n n CHC C1C HEC sing 452 n n CHC HHC HEC sing 453 n n CHD C4C HEC doub 454 n n CHD C1D HEC sing 455 n n CHD HHD HEC sing 456 n n NA C1A HEC sing 457 n y NA C4A HEC sing 458 n y C1A C2A HEC sing 459 n y C2A C3A HEC doub 460 n y C2A CAA HEC sing 461 n n C3A C4A HEC sing 462 n y C3A CMA HEC sing 463 n n CMA HMA1 HEC sing 464 n n CMA HMA2 HEC sing 465 n n CMA HMA3 HEC sing 466 n n CAA CBA HEC sing 467 n n CAA HAA1 HEC sing 468 n n CAA HAA2 HEC sing 469 n n CBA CGA HEC sing 470 n n CBA HBA1 HEC sing 471 n n CBA HBA2 HEC sing 472 n n CGA O1A HEC doub 473 n n CGA O2A HEC sing 474 n n O2A H2A HEC sing 475 n n NB C1B HEC sing 476 n y NB C4B HEC sing 477 n y C1B C2B HEC doub 478 n y C2B C3B HEC sing 479 n y C2B CMB HEC sing 480 n n C3B C4B HEC sing 481 n y C3B CAB HEC doub 482 e n CMB HMB1 HEC sing 483 n n CMB HMB2 HEC sing 484 n n CMB HMB3 HEC sing 485 n n CAB CBB HEC sing 486 n n CAB HAB HEC sing 487 n n CBB HBB1 HEC sing 488 n n CBB HBB2 HEC sing 489 n n CBB HBB3 HEC sing 490 n n NC C1C HEC sing 491 n y NC C4C HEC sing 492 n y C1C C2C HEC doub 493 n y C2C C3C HEC sing 494 n y C2C CMC HEC sing 495 n n C3C C4C HEC sing 496 n y C3C CAC HEC doub 497 e n CMC HMC1 HEC sing 498 n n CMC HMC2 HEC sing 499 n n CMC HMC3 HEC sing 500 n n CAC CBC HEC sing 501 n n CAC HAC HEC sing 502 n n CBC HBC1 HEC sing 503 n n CBC HBC2 HEC sing 504 n n CBC HBC3 HEC sing 505 n n ND C1D HEC sing 506 n y ND C4D HEC sing 507 n y C1D C2D HEC doub 508 n y C2D C3D HEC sing 509 n y C2D CMD HEC sing 510 n n C3D C4D HEC doub 511 n y C3D CAD HEC sing 512 n n CMD HMD1 HEC sing 513 n n CMD HMD2 HEC sing 514 n n CMD HMD3 HEC sing 515 n n CAD CBD HEC sing 516 n n CAD HAD1 HEC sing 517 n n CAD HAD2 HEC sing 518 n n CBD CGD HEC sing 519 n n CBD HBD1 HEC sing 520 n n CBD HBD2 HEC sing 521 n n CGD O1D HEC doub 522 n n CGD O2D HEC sing 523 n n O2D H2D HEC sing 524 n n # _atom_sites.entry_id 8AB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 DCQ C 1 507 904 DCQ DCQ . BA 17 FES P 1 301 301 FES FES . CA 15 LMT P 1 302 502 LMT LMT . DA 13 PTY P 1 303 504 PTY PTY . EA 14 CDL A 1 3001 3001 CDL CDL . FA 14 CDL A 1 3002 3101 CDL CDL . GA 18 XP4 A 1 3003 101 XP4 XP4 . HA 19 HEC D 1 401 401 HEC HEC . IA 14 CDL H 1 701 701 CDL CDL . JA 14 CDL H 1 702 101 CDL CDL . KA 12 PC1 I 1 201 201 PC1 PC1 . LA 15 LMT J 1 101 102 LMT LMT . MA 11 HEM N 1 501 501 HEM HEM . NA 11 HEM N 1 502 502 HEM HEM . OA 12 PC1 N 1 503 601 PC1 PC1 . PA 13 PTY N 1 504 801 PTY PTY . QA 14 CDL N 1 505 901 CDL CDL . RA 15 LMT N 1 506 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 18 XP4 L 1 3003 101 XP4 XP4 . WA 19 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 701 701 CDL CDL . YA 14 CDL S 1 702 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . WA 19 157.923 176.689 95.603 1 37.4 ? FE HEC 401 O 1 HETATM 2 C CHA HEC . . . WA 19 160.391 175.711 97.696 1 38.61 ? CHA HEC 401 O 1 HETATM 3 C CHB HEC . . . WA 19 156.161 177.934 98.219 1 37.36 ? CHB HEC 401 O 1 HETATM 4 C CHC HEC . . . WA 19 155.651 178.116 93.464 1 36.74 ? CHC HEC 401 O 1 HETATM 5 C CHD HEC . . . WA 19 159.49 175.12 92.954 1 38.55 ? CHD HEC 401 O 1 HETATM 6 N NA HEC . . . WA 19 158.228 176.816 97.655 1 37.51 ? NA HEC 401 O 1 HETATM 7 C C1A HEC . . . WA 19 159.277 176.393 98.338 1 37.36 ? C1A HEC 401 O 1 HETATM 8 C C2A HEC . . . WA 19 159.239 176.666 99.775 1 36.03 ? C2A HEC 401 O 1 HETATM 9 C C3A HEC . . . WA 19 157.967 177.331 99.941 1 37.23 ? C3A HEC 401 O 1 HETATM 10 C C4A HEC . . . WA 19 157.452 177.389 98.563 1 37.55 ? C4A HEC 401 O 1 HETATM 11 C CMA HEC . . . WA 19 157.36 177.843 101.193 1 37.23 ? CMA HEC 401 O 1 HETATM 12 C CAA HEC . . . WA 19 160.171 176.284 100.845 1 37.22 ? CAA HEC 401 O 1 HETATM 13 C CBA HEC . . . WA 19 161.448 177.06 100.845 1 39.84 ? CBA HEC 401 O 1 HETATM 14 C CGA HEC . . . WA 19 162.089 176.495 102.087 1 40.3 ? CGA HEC 401 O 1 HETATM 15 O O1A HEC . . . WA 19 162.472 175.3 102.077 1 41.99 ? O1A HEC 401 O 1 HETATM 16 O O2A HEC . . . WA 19 162.187 177.212 103.099 1 39.89 ? O2A HEC 401 O 1 HETATM 17 N NB HEC . . . WA 19 156.21 177.838 95.806 1 37.37 ? NB HEC 401 O 1 HETATM 18 C C1B HEC . . . WA 19 155.635 178.242 96.917 1 37.95 ? C1B HEC 401 O 1 HETATM 19 C C2B HEC . . . WA 19 154.422 179.043 96.812 1 38.62 ? C2B HEC 401 O 1 HETATM 20 C C3B HEC . . . WA 19 154.343 179.09 95.353 1 39.76 ? C3B HEC 401 O 1 HETATM 21 C C4B HEC . . . WA 19 155.449 178.331 94.867 1 37.62 ? C4B HEC 401 O 1 HETATM 22 C CMB HEC . . . WA 19 153.623 179.593 97.954 1 39.28 ? CMB HEC 401 O 1 HETATM 23 C CAB HEC . . . WA 19 153.466 179.711 94.376 1 40.9 ? CAB HEC 401 O 1 HETATM 24 C CBB HEC . . . WA 19 152.29 180.529 94.759 1 42.82 ? CBB HEC 401 O 1 HETATM 25 N NC HEC . . . WA 19 157.601 176.609 93.55 1 38.54 ? NC HEC 401 O 1 HETATM 26 C C1C HEC . . . WA 19 156.617 177.21 92.873 1 39.45 ? C1C HEC 401 O 1 HETATM 27 C C2C HEC . . . WA 19 156.623 176.953 91.434 1 39.17 ? C2C HEC 401 O 1 HETATM 28 C C3C HEC . . . WA 19 157.799 176.1 91.326 1 40.66 ? C3C HEC 401 O 1 HETATM 29 C C4C HEC . . . WA 19 158.301 175.925 92.664 1 38.49 ? C4C HEC 401 O 1 HETATM 30 C CMC HEC . . . WA 19 155.67 177.473 90.418 1 40.4 ? CMC HEC 401 O 1 HETATM 31 C CAC HEC . . . WA 19 158.435 175.476 90.161 1 42.04 ? CAC HEC 401 O 1 HETATM 32 C CBC HEC . . . WA 19 157.882 175.641 88.776 1 45.1 ? CBC HEC 401 O 1 HETATM 33 N ND HEC . . . WA 19 159.671 175.585 95.362 1 39.19 ? ND HEC 401 O 1 HETATM 34 C C1D HEC . . . WA 19 160.148 175.017 94.244 1 39.01 ? C1D HEC 401 O 1 HETATM 35 C C2D HEC . . . WA 19 161.418 174.316 94.416 1 39.53 ? C2D HEC 401 O 1 HETATM 36 C C3D HEC . . . WA 19 161.671 174.473 95.836 1 40.44 ? C3D HEC 401 O 1 HETATM 37 C C4D HEC . . . WA 19 160.536 175.271 96.314 1 39.35 ? C4D HEC 401 O 1 HETATM 38 C CMD HEC . . . WA 19 162.259 173.584 93.435 1 39.63 ? CMD HEC 401 O 1 HETATM 39 C CAD HEC . . . WA 19 162.827 173.954 96.589 1 43.01 ? CAD HEC 401 O 1 HETATM 40 C CBD HEC . . . WA 19 163.806 175.094 96.674 1 46.76 ? CBD HEC 401 O 1 HETATM 41 C CGD HEC . . . WA 19 165.048 174.617 97.377 1 49.89 ? CGD HEC 401 O 1 HETATM 42 O O1D HEC . . . WA 19 166.157 175.047 96.99 1 55.5 ? O1D HEC 401 O 1 HETATM 43 O O2D HEC . . . WA 19 164.936 173.802 98.324 1 52.29 ? O2D HEC 401 O 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #