data_8AB8
#
_model_server_result.job_id            -Bueg7APHGcCYNqE04bviQ 
_model_server_result.datetime_utc      '2024-11-28 14:49:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ab8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":501}' 
#
_entry.id    8AB8 
#
_exptl.entry_id    8AB8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AB8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 U N N 
? 11 V N N 
? 11 MA N N 
? 11 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 525 n n 
CHA C4D HEM doub 526 n n 
CHA HHA HEM sing 527 n n 
CHB C4A HEM sing 528 n n 
CHB C1B HEM doub 529 n n 
CHB HHB HEM sing 530 n n 
CHC C4B HEM sing 531 n n 
CHC C1C HEM doub 532 n n 
CHC HHC HEM sing 533 n n 
CHD C4C HEM doub 534 n n 
CHD C1D HEM sing 535 n n 
CHD HHD HEM sing 536 n n 
C1A C2A HEM doub 537 n y 
C1A NA HEM sing 538 n y 
C2A C3A HEM sing 539 n y 
C2A CAA HEM sing 540 n n 
C3A C4A HEM doub 541 n y 
C3A CMA HEM sing 542 n n 
C4A NA HEM sing 543 n y 
CMA HMA HEM sing 544 n n 
CMA HMAA HEM sing 545 n n 
CMA HMAB HEM sing 546 n n 
CAA CBA HEM sing 547 n n 
CAA HAA HEM sing 548 n n 
CAA HAAA HEM sing 549 n n 
CBA CGA HEM sing 550 n n 
CBA HBA HEM sing 551 n n 
CBA HBAA HEM sing 552 n n 
CGA O1A HEM doub 553 n n 
CGA O2A HEM sing 554 n n 
C1B C2B HEM sing 555 n n 
C1B NB HEM sing 556 n n 
C2B C3B HEM doub 557 n n 
C2B CMB HEM sing 558 n n 
C3B C4B HEM sing 559 n n 
C3B CAB HEM sing 560 n n 
C4B NB HEM doub 561 n n 
CMB HMB HEM sing 562 n n 
CMB HMBA HEM sing 563 n n 
CMB HMBB HEM sing 564 n n 
CAB CBB HEM doub 565 n n 
CAB HAB HEM sing 566 n n 
CBB HBB HEM sing 567 n n 
CBB HBBA HEM sing 568 n n 
C1C C2C HEM sing 569 n y 
C1C NC HEM sing 570 n y 
C2C C3C HEM doub 571 n y 
C2C CMC HEM sing 572 n n 
C3C C4C HEM sing 573 n y 
C3C CAC HEM sing 574 n n 
C4C NC HEM sing 575 n y 
CMC HMC HEM sing 576 n n 
CMC HMCA HEM sing 577 n n 
CMC HMCB HEM sing 578 n n 
CAC CBC HEM doub 579 n n 
CAC HAC HEM sing 580 n n 
CBC HBC HEM sing 581 n n 
CBC HBCA HEM sing 582 n n 
C1D C2D HEM sing 583 n n 
C1D ND HEM doub 584 n n 
C2D C3D HEM doub 585 n n 
C2D CMD HEM sing 586 n n 
C3D C4D HEM sing 587 n n 
C3D CAD HEM sing 588 n n 
C4D ND HEM sing 589 n n 
CMD HMD HEM sing 590 n n 
CMD HMDA HEM sing 591 n n 
CMD HMDB HEM sing 592 n n 
CAD CBD HEM sing 593 n n 
CAD HAD HEM sing 594 n n 
CAD HADA HEM sing 595 n n 
CBD CGD HEM sing 596 n n 
CBD HBD HEM sing 597 n n 
CBD HBDA HEM sing 598 n n 
CGD O1D HEM doub 599 n n 
CGD O2D HEM sing 600 n n 
O2A H2A HEM sing 601 n n 
O2D H2D HEM sing 602 n n 
FE NA HEM sing 603 n n 
FE NB HEM sing 604 n n 
FE NC HEM sing 605 n n 
FE ND HEM sing 606 n n 
#
_atom_sites.entry_id                     8AB8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 HEM C 1 501 501 HEM HEM . 
V 11 HEM C 1 502 502 HEM HEM . 
W 12 PC1 C 1 503 601 PC1 PC1 . 
X 13 PTY C 1 504 801 PTY PTY . 
Y 14 CDL C 1 505 901 CDL CDL . 
Z 15 LMT C 1 506 903 LMT LMT . 
AA 16 DCQ C 1 507 904 DCQ DCQ . 
BA 17 FES P 1 301 301 FES FES . 
CA 15 LMT P 1 302 502 LMT LMT . 
DA 13 PTY P 1 303 504 PTY PTY . 
EA 14 CDL A 1 3001 3001 CDL CDL . 
FA 14 CDL A 1 3002 3101 CDL CDL . 
GA 18 XP4 A 1 3003 101 XP4 XP4 . 
HA 19 HEC D 1 401 401 HEC HEC . 
IA 14 CDL H 1 701 701 CDL CDL . 
JA 14 CDL H 1 702 101 CDL CDL . 
KA 12 PC1 I 1 201 201 PC1 PC1 . 
LA 15 LMT J 1 101 102 LMT LMT . 
MA 11 HEM N 1 501 501 HEM HEM . 
NA 11 HEM N 1 502 502 HEM HEM . 
OA 12 PC1 N 1 503 601 PC1 PC1 . 
PA 13 PTY N 1 504 801 PTY PTY . 
QA 14 CDL N 1 505 901 CDL CDL . 
RA 15 LMT N 1 506 903 LMT LMT . 
SA 13 PTY E 1 401 401 PTY PTY . 
TA 14 CDL L 1 3001 3001 CDL CDL . 
UA 14 CDL L 1 3002 3101 CDL CDL . 
VA 18 XP4 L 1 3003 101 XP4 XP4 . 
WA 19 HEC O 1 401 401 HEC HEC . 
XA 14 CDL S 1 701 701 CDL CDL . 
YA 14 CDL S 1 702 101 CDL CDL . 
ZA 12 PC1 T 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . U 11 147.859 139.66 122.836 1 26.68 ? CHA HEM 501 C 1 
HETATM 2 C CHB HEM . . . U 11 146.141 138.42 127.247 1 28.85 ? CHB HEM 501 C 1 
HETATM 3 C CHC HEM . . . U 11 149.081 141.705 129.273 1 30.7 ? CHC HEM 501 C 1 
HETATM 4 C CHD HEM . . . U 11 150.448 143.2 124.923 1 28.23 ? CHD HEM 501 C 1 
HETATM 5 C C1A HEM . . . U 11 147.219 139.042 123.888 1 27.48 ? C1A HEM 501 C 1 
HETATM 6 C C2A HEM . . . U 11 146.292 137.973 123.715 1 29.57 ? C2A HEM 501 C 1 
HETATM 7 C C3A HEM . . . U 11 145.811 137.628 124.928 1 28.69 ? C3A HEM 501 C 1 
HETATM 8 C C4A HEM . . . U 11 146.396 138.482 125.884 1 28.58 ? C4A HEM 501 C 1 
HETATM 9 C CMA HEM . . . U 11 144.828 136.526 125.203 1 27.86 ? CMA HEM 501 C 1 
HETATM 10 C CAA HEM . . . U 11 145.926 137.253 122.439 1 31.56 ? CAA HEM 501 C 1 
HETATM 11 C CBA HEM . . . U 11 147.133 136.323 122.201 1 35.46 ? CBA HEM 501 C 1 
HETATM 12 C CGA HEM . . . U 11 147.232 135.582 120.892 1 36.48 ? CGA HEM 501 C 1 
HETATM 13 O O1A HEM . . . U 11 148.128 135.854 120.047 1 36.81 ? O1A HEM 501 C 1 
HETATM 14 O O2A HEM . . . U 11 146.432 134.636 120.699 1 37.71 ? O2A HEM 501 C 1 
HETATM 15 C C1B HEM . . . U 11 146.825 139.208 128.175 1 29.45 ? C1B HEM 501 C 1 
HETATM 16 C C2B HEM . . . U 11 146.645 139.08 129.586 1 29.67 ? C2B HEM 501 C 1 
HETATM 17 C C3B HEM . . . U 11 147.504 139.994 130.145 1 30.54 ? C3B HEM 501 C 1 
HETATM 18 C C4B HEM . . . U 11 148.161 140.691 129.047 1 29.87 ? C4B HEM 501 C 1 
HETATM 19 C CMB HEM . . . U 11 145.724 138.108 130.287 1 27.53 ? CMB HEM 501 C 1 
HETATM 20 C CAB HEM . . . U 11 147.762 140.363 131.541 1 32.48 ? CAB HEM 501 C 1 
HETATM 21 C CBB HEM . . . U 11 146.846 140.14 132.469 1 34.61 ? CBB HEM 501 C 1 
HETATM 22 C C1C HEM . . . U 11 149.668 142.434 128.247 1 29.93 ? C1C HEM 501 C 1 
HETATM 23 C C2C HEM . . . U 11 150.468 143.576 128.445 1 32 ? C2C HEM 501 C 1 
HETATM 24 C C3C HEM . . . U 11 150.872 144.006 127.221 1 31.83 ? C3C HEM 501 C 1 
HETATM 25 C C4C HEM . . . U 11 150.275 143.127 126.262 1 28.98 ? C4C HEM 501 C 1 
HETATM 26 C CMC HEM . . . U 11 150.863 144.245 129.752 1 30.94 ? CMC HEM 501 C 1 
HETATM 27 C CAC HEM . . . U 11 151.703 145.218 127.08 1 34.96 ? CAC HEM 501 C 1 
HETATM 28 C CBC HEM . . . U 11 151.517 145.805 125.924 1 38.6 ? CBC HEM 501 C 1 
HETATM 29 C C1D HEM . . . U 11 149.846 142.312 124.036 1 27.35 ? C1D HEM 501 C 1 
HETATM 30 C C2D HEM . . . U 11 150.086 142.434 122.577 1 28.65 ? C2D HEM 501 C 1 
HETATM 31 C C3D HEM . . . U 11 149.355 141.452 121.997 1 29.15 ? C3D HEM 501 C 1 
HETATM 32 C C4D HEM . . . U 11 148.671 140.748 123.094 1 27.78 ? C4D HEM 501 C 1 
HETATM 33 C CMD HEM . . . U 11 150.967 143.446 121.861 1 27.28 ? CMD HEM 501 C 1 
HETATM 34 C CAD HEM . . . U 11 149.218 141.165 120.519 1 31.18 ? CAD HEM 501 C 1 
HETATM 35 C CBD HEM . . . U 11 150.312 140.303 119.917 1 33.84 ? CBD HEM 501 C 1 
HETATM 36 C CGD HEM . . . U 11 149.868 138.87 120.081 1 35.57 ? CGD HEM 501 C 1 
HETATM 37 O O1D HEM . . . U 11 148.729 138.426 119.78 1 35.93 ? O1D HEM 501 C 1 
HETATM 38 O O2D HEM . . . U 11 150.685 138.093 120.574 1 37.79 ? O2D HEM 501 C 1 
HETATM 39 N NA HEM . . . U 11 147.242 139.338 125.236 1 27.51 ? NA HEM 501 C 1 
HETATM 40 N NB HEM . . . U 11 147.731 140.16 127.909 1 28.14 ? NB HEM 501 C 1 
HETATM 41 N NC HEM . . . U 11 149.564 142.176 126.933 1 28.46 ? NC HEM 501 C 1 
HETATM 42 N ND HEM . . . U 11 149 141.293 124.3 1 27.7 ? ND HEM 501 C 1 
HETATM 43 FE FE HEM . . . U 11 148.373 140.748 126.004 1 26.03 ? FE HEM 501 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    77 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#