data_8AB8
#
_model_server_result.job_id            mESFlwfGVH1rtHYIfC2XXQ 
_model_server_result.datetime_utc      '2024-11-28 14:51:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ab8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":502}' 
#
_entry.id    8AB8 
#
_exptl.entry_id    8AB8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AB8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 U N N 
? 11 V N N 
? 11 MA N N 
? 11 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 525 n n 
CHA C4D HEM doub 526 n n 
CHA HHA HEM sing 527 n n 
CHB C4A HEM sing 528 n n 
CHB C1B HEM doub 529 n n 
CHB HHB HEM sing 530 n n 
CHC C4B HEM sing 531 n n 
CHC C1C HEM doub 532 n n 
CHC HHC HEM sing 533 n n 
CHD C4C HEM doub 534 n n 
CHD C1D HEM sing 535 n n 
CHD HHD HEM sing 536 n n 
C1A C2A HEM doub 537 n y 
C1A NA HEM sing 538 n y 
C2A C3A HEM sing 539 n y 
C2A CAA HEM sing 540 n n 
C3A C4A HEM doub 541 n y 
C3A CMA HEM sing 542 n n 
C4A NA HEM sing 543 n y 
CMA HMA HEM sing 544 n n 
CMA HMAA HEM sing 545 n n 
CMA HMAB HEM sing 546 n n 
CAA CBA HEM sing 547 n n 
CAA HAA HEM sing 548 n n 
CAA HAAA HEM sing 549 n n 
CBA CGA HEM sing 550 n n 
CBA HBA HEM sing 551 n n 
CBA HBAA HEM sing 552 n n 
CGA O1A HEM doub 553 n n 
CGA O2A HEM sing 554 n n 
C1B C2B HEM sing 555 n n 
C1B NB HEM sing 556 n n 
C2B C3B HEM doub 557 n n 
C2B CMB HEM sing 558 n n 
C3B C4B HEM sing 559 n n 
C3B CAB HEM sing 560 n n 
C4B NB HEM doub 561 n n 
CMB HMB HEM sing 562 n n 
CMB HMBA HEM sing 563 n n 
CMB HMBB HEM sing 564 n n 
CAB CBB HEM doub 565 n n 
CAB HAB HEM sing 566 n n 
CBB HBB HEM sing 567 n n 
CBB HBBA HEM sing 568 n n 
C1C C2C HEM sing 569 n y 
C1C NC HEM sing 570 n y 
C2C C3C HEM doub 571 n y 
C2C CMC HEM sing 572 n n 
C3C C4C HEM sing 573 n y 
C3C CAC HEM sing 574 n n 
C4C NC HEM sing 575 n y 
CMC HMC HEM sing 576 n n 
CMC HMCA HEM sing 577 n n 
CMC HMCB HEM sing 578 n n 
CAC CBC HEM doub 579 n n 
CAC HAC HEM sing 580 n n 
CBC HBC HEM sing 581 n n 
CBC HBCA HEM sing 582 n n 
C1D C2D HEM sing 583 n n 
C1D ND HEM doub 584 n n 
C2D C3D HEM doub 585 n n 
C2D CMD HEM sing 586 n n 
C3D C4D HEM sing 587 n n 
C3D CAD HEM sing 588 n n 
C4D ND HEM sing 589 n n 
CMD HMD HEM sing 590 n n 
CMD HMDA HEM sing 591 n n 
CMD HMDB HEM sing 592 n n 
CAD CBD HEM sing 593 n n 
CAD HAD HEM sing 594 n n 
CAD HADA HEM sing 595 n n 
CBD CGD HEM sing 596 n n 
CBD HBD HEM sing 597 n n 
CBD HBDA HEM sing 598 n n 
CGD O1D HEM doub 599 n n 
CGD O2D HEM sing 600 n n 
O2A H2A HEM sing 601 n n 
O2D H2D HEM sing 602 n n 
FE NA HEM sing 603 n n 
FE NB HEM sing 604 n n 
FE NC HEM sing 605 n n 
FE ND HEM sing 606 n n 
#
_atom_sites.entry_id                     8AB8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 HEM C 1 501 501 HEM HEM . 
V 11 HEM C 1 502 502 HEM HEM . 
W 12 PC1 C 1 503 601 PC1 PC1 . 
X 13 PTY C 1 504 801 PTY PTY . 
Y 14 CDL C 1 505 901 CDL CDL . 
Z 15 LMT C 1 506 903 LMT LMT . 
AA 16 DCQ C 1 507 904 DCQ DCQ . 
BA 17 FES P 1 301 301 FES FES . 
CA 15 LMT P 1 302 502 LMT LMT . 
DA 13 PTY P 1 303 504 PTY PTY . 
EA 14 CDL A 1 3001 3001 CDL CDL . 
FA 14 CDL A 1 3002 3101 CDL CDL . 
GA 18 XP4 A 1 3003 101 XP4 XP4 . 
HA 19 HEC D 1 401 401 HEC HEC . 
IA 14 CDL H 1 701 701 CDL CDL . 
JA 14 CDL H 1 702 101 CDL CDL . 
KA 12 PC1 I 1 201 201 PC1 PC1 . 
LA 15 LMT J 1 101 102 LMT LMT . 
MA 11 HEM N 1 501 501 HEM HEM . 
NA 11 HEM N 1 502 502 HEM HEM . 
OA 12 PC1 N 1 503 601 PC1 PC1 . 
PA 13 PTY N 1 504 801 PTY PTY . 
QA 14 CDL N 1 505 901 CDL CDL . 
RA 15 LMT N 1 506 903 LMT LMT . 
SA 13 PTY E 1 401 401 PTY PTY . 
TA 14 CDL L 1 3001 3001 CDL CDL . 
UA 14 CDL L 1 3002 3101 CDL CDL . 
VA 18 XP4 L 1 3003 101 XP4 XP4 . 
WA 19 HEC O 1 401 401 HEC HEC . 
XA 14 CDL S 1 701 701 CDL CDL . 
YA 14 CDL S 1 702 101 CDL CDL . 
ZA 12 PC1 T 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . V 11 144.237 135.748 148.621 1 27.19 ? CHA HEM 502 C 1 
HETATM 2 C CHB HEM . . . V 11 146.759 137.016 144.642 1 25.71 ? CHB HEM 502 C 1 
HETATM 3 C CHC HEM . . . V 11 142.615 137.311 142.082 1 27.04 ? CHC HEM 502 C 1 
HETATM 4 C CHD HEM . . . V 11 140.082 136.643 146.254 1 27.33 ? CHD HEM 502 C 1 
HETATM 5 C C1A HEM . . . V 11 145.27 135.981 147.719 1 27.22 ? C1A HEM 502 C 1 
HETATM 6 C C2A HEM . . . V 11 146.659 135.88 148.019 1 27.43 ? C2A HEM 502 C 1 
HETATM 7 C C3A HEM . . . V 11 147.382 136.235 146.916 1 26.86 ? C3A HEM 502 C 1 
HETATM 8 C C4A HEM . . . V 11 146.432 136.586 145.919 1 26.99 ? C4A HEM 502 C 1 
HETATM 9 C CMA HEM . . . V 11 148.895 136.251 146.745 1 25.94 ? CMA HEM 502 C 1 
HETATM 10 C CAA HEM . . . V 11 147.224 135.422 149.338 1 29.53 ? CAA HEM 502 C 1 
HETATM 11 C CBA HEM . . . V 11 147.673 133.945 149.206 1 35.6 ? CBA HEM 502 C 1 
HETATM 12 C CGA HEM . . . V 11 146.577 132.982 148.784 1 37.41 ? CGA HEM 502 C 1 
HETATM 13 O O1A HEM . . . V 11 146.63 132.351 147.694 1 38.32 ? O1A HEM 502 C 1 
HETATM 14 O O2A HEM . . . V 11 145.586 132.776 149.534 1 39.45 ? O2A HEM 502 C 1 
HETATM 15 C C1B HEM . . . V 11 145.814 137.238 143.629 1 25.84 ? C1B HEM 502 C 1 
HETATM 16 C C2B HEM . . . V 11 146.195 137.613 142.303 1 26.74 ? C2B HEM 502 C 1 
HETATM 17 C C3B HEM . . . V 11 145.023 137.704 141.585 1 26.86 ? C3B HEM 502 C 1 
HETATM 18 C C4B HEM . . . V 11 143.941 137.383 142.504 1 26.65 ? C4B HEM 502 C 1 
HETATM 19 C CMB HEM . . . V 11 147.623 137.847 141.838 1 25.49 ? CMB HEM 502 C 1 
HETATM 20 C CAB HEM . . . V 11 144.77 138.023 140.179 1 30.2 ? CAB HEM 502 C 1 
HETATM 21 C CBB HEM . . . V 11 145.593 138.809 139.496 1 31.26 ? CBB HEM 502 C 1 
HETATM 22 C C1C HEM . . . V 11 141.578 137.051 142.981 1 27.51 ? C1C HEM 502 C 1 
HETATM 23 C C2C HEM . . . V 11 140.221 136.9 142.664 1 27.06 ? C2C HEM 502 C 1 
HETATM 24 C C3C HEM . . . V 11 139.558 136.714 143.877 1 27.75 ? C3C HEM 502 C 1 
HETATM 25 C C4C HEM . . . V 11 140.487 136.754 144.938 1 27.38 ? C4C HEM 502 C 1 
HETATM 26 C CMC HEM . . . V 11 139.619 136.934 141.28 1 26.24 ? CMC HEM 502 C 1 
HETATM 27 C CAC HEM . . . V 11 138.113 136.562 144.144 1 28.5 ? CAC HEM 502 C 1 
HETATM 28 C CBC HEM . . . V 11 137.099 136.513 143.289 1 31.12 ? CBC HEM 502 C 1 
HETATM 29 C C1D HEM . . . V 11 141.064 136.387 147.193 1 27.99 ? C1D HEM 502 C 1 
HETATM 30 C C2D HEM . . . V 11 140.667 136.081 148.573 1 27.67 ? C2D HEM 502 C 1 
HETATM 31 C C3D HEM . . . V 11 141.821 135.827 149.206 1 28.45 ? C3D HEM 502 C 1 
HETATM 32 C C4D HEM . . . V 11 142.912 135.969 148.229 1 26.88 ? C4D HEM 502 C 1 
HETATM 33 C CMD HEM . . . V 11 139.268 136.056 149.181 1 27.13 ? CMD HEM 502 C 1 
HETATM 34 C CAD HEM . . . V 11 141.941 135.46 150.663 1 31.42 ? CAD HEM 502 C 1 
HETATM 35 C CBD HEM . . . V 11 141.854 133.938 150.714 1 36.21 ? CBD HEM 502 C 1 
HETATM 36 C CGD HEM . . . V 11 142.412 133.402 151.997 1 43.19 ? CGD HEM 502 C 1 
HETATM 37 O O1D HEM . . . V 11 141.598 132.865 152.754 1 43.43 ? O1D HEM 502 C 1 
HETATM 38 O O2D HEM . . . V 11 143.654 133.439 152.28 1 50.63 ? O2D HEM 502 C 1 
HETATM 39 N NA HEM . . . V 11 145.148 136.436 146.412 1 27.12 ? NA HEM 502 C 1 
HETATM 40 N NB HEM . . . V 11 144.484 137.107 143.702 1 26.31 ? NB HEM 502 C 1 
HETATM 41 N NC HEM . . . V 11 141.7 136.931 144.346 1 26.41 ? NC HEM 502 C 1 
HETATM 42 N ND HEM . . . V 11 142.408 136.306 147.027 1 26.74 ? ND HEM 502 C 1 
HETATM 43 FE FE HEM . . . V 11 143.404 136.592 145.449 1 26.94 ? FE HEM 502 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#