data_8AB8 # _model_server_result.job_id TWqIxVXOaNyiz0Dolaua3A _model_server_result.datetime_utc '2024-11-28 14:56:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ab8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":504}' # _entry.id 8AB8 # _exptl.entry_id 8AB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 DA N N ? 13 PA N N ? 13 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 976 n n C1 C6 PTY sing 977 n n C1 HC11 PTY sing 978 n n C1 HC12 PTY sing 979 n n C2 C3 PTY sing 980 n n C2 N1 PTY sing 981 n n C2 HC21 PTY sing 982 n n C2 HC22 PTY sing 983 n n C3 O11 PTY sing 984 n n C3 HC31 PTY sing 985 n n C3 HC32 PTY sing 986 n n O4 C30 PTY sing 987 n n C5 C6 PTY sing 988 n n C5 O14 PTY sing 989 n n C5 HC51 PTY sing 990 n n C5 HC52 PTY sing 991 n n C6 O7 PTY sing 992 n n C6 HC6 PTY sing 993 n n O7 C8 PTY sing 994 n n C8 O10 PTY doub 995 n n C8 C11 PTY sing 996 n n C11 C12 PTY sing 997 n n C11 H111 PTY sing 998 n n C11 H112 PTY sing 999 n n C12 C13 PTY sing 1000 n n C12 H121 PTY sing 1001 n n C12 H122 PTY sing 1002 n n C13 C14 PTY sing 1003 n n C13 H131 PTY sing 1004 n n C13 H132 PTY sing 1005 n n C14 C15 PTY sing 1006 n n C14 H141 PTY sing 1007 n n C14 H142 PTY sing 1008 n n C15 C16 PTY sing 1009 n n C15 H151 PTY sing 1010 n n C15 H152 PTY sing 1011 n n C16 C17 PTY sing 1012 n n C16 H161 PTY sing 1013 n n C16 H162 PTY sing 1014 n n C17 C18 PTY sing 1015 n n C17 H171 PTY sing 1016 n n C17 H172 PTY sing 1017 n n C18 C19 PTY sing 1018 n n C18 H181 PTY sing 1019 n n C18 H182 PTY sing 1020 n n C19 C20 PTY sing 1021 n n C19 H191 PTY sing 1022 n n C19 H192 PTY sing 1023 n n C20 C21 PTY sing 1024 n n C20 H201 PTY sing 1025 n n C20 H202 PTY sing 1026 n n C21 C22 PTY sing 1027 n n C21 H211 PTY sing 1028 n n C21 H212 PTY sing 1029 n n C22 C23 PTY sing 1030 n n C22 H221 PTY sing 1031 n n C22 H222 PTY sing 1032 n n C23 C24 PTY sing 1033 n n C23 H231 PTY sing 1034 n n C23 H232 PTY sing 1035 n n C24 C25 PTY sing 1036 n n C24 H241 PTY sing 1037 n n C24 H242 PTY sing 1038 n n C25 C26 PTY sing 1039 n n C25 H251 PTY sing 1040 n n C25 H252 PTY sing 1041 n n C26 C27 PTY sing 1042 n n C26 H261 PTY sing 1043 n n C26 H262 PTY sing 1044 n n C27 C28 PTY sing 1045 n n C27 H271 PTY sing 1046 n n C27 H272 PTY sing 1047 n n C28 C29 PTY sing 1048 n n C28 H281 PTY sing 1049 n n C28 H282 PTY sing 1050 n n C29 H291 PTY sing 1051 n n C29 H292 PTY sing 1052 n n C29 H293 PTY sing 1053 n n C30 C31 PTY sing 1054 n n C30 O30 PTY doub 1055 n n C31 C32 PTY sing 1056 n n C31 H311 PTY sing 1057 n n C31 H312 PTY sing 1058 n n C32 C33 PTY sing 1059 n n C32 H321 PTY sing 1060 n n C32 H322 PTY sing 1061 n n C33 C34 PTY sing 1062 n n C33 H331 PTY sing 1063 n n C33 H332 PTY sing 1064 n n C34 C35 PTY sing 1065 n n C34 H341 PTY sing 1066 n n C34 H342 PTY sing 1067 n n C35 C36 PTY sing 1068 n n C35 H351 PTY sing 1069 n n C35 H352 PTY sing 1070 n n C36 C37 PTY sing 1071 n n C36 H361 PTY sing 1072 n n C36 H362 PTY sing 1073 n n C37 C38 PTY sing 1074 n n C37 H371 PTY sing 1075 n n C37 H372 PTY sing 1076 n n C38 C39 PTY sing 1077 n n C38 H381 PTY sing 1078 n n C38 H382 PTY sing 1079 n n C39 C40 PTY sing 1080 n n C39 H391 PTY sing 1081 n n C39 H392 PTY sing 1082 n n C40 C41 PTY sing 1083 n n C40 H401 PTY sing 1084 n n C40 H402 PTY sing 1085 n n C41 C42 PTY sing 1086 n n C41 H411 PTY sing 1087 n n C41 H412 PTY sing 1088 n n C42 C43 PTY sing 1089 n n C42 H421 PTY sing 1090 n n C42 H422 PTY sing 1091 n n C43 C44 PTY sing 1092 n n C43 H431 PTY sing 1093 n n C43 H432 PTY sing 1094 n n C44 H441 PTY sing 1095 n n C44 H442 PTY sing 1096 n n C44 H443 PTY sing 1097 n n P1 O11 PTY sing 1098 n n P1 O12 PTY sing 1099 n n P1 O13 PTY doub 1100 n n P1 O14 PTY sing 1101 n n O12 H12O PTY sing 1102 n n N1 HN11 PTY sing 1103 n n N1 HN12 PTY sing 1104 n n # _atom_sites.entry_id 8AB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 DCQ C 1 507 904 DCQ DCQ . BA 17 FES P 1 301 301 FES FES . CA 15 LMT P 1 302 502 LMT LMT . DA 13 PTY P 1 303 504 PTY PTY . EA 14 CDL A 1 3001 3001 CDL CDL . FA 14 CDL A 1 3002 3101 CDL CDL . GA 18 XP4 A 1 3003 101 XP4 XP4 . HA 19 HEC D 1 401 401 HEC HEC . IA 14 CDL H 1 701 701 CDL CDL . JA 14 CDL H 1 702 101 CDL CDL . KA 12 PC1 I 1 201 201 PC1 PC1 . LA 15 LMT J 1 101 102 LMT LMT . MA 11 HEM N 1 501 501 HEM HEM . NA 11 HEM N 1 502 502 HEM HEM . OA 12 PC1 N 1 503 601 PC1 PC1 . PA 13 PTY N 1 504 801 PTY PTY . QA 14 CDL N 1 505 901 CDL CDL . RA 15 LMT N 1 506 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 18 XP4 L 1 3003 101 XP4 XP4 . WA 19 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 701 701 CDL CDL . YA 14 CDL S 1 702 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . PA 13 134.655 169.96 148.738 1 76.4 ? C1 PTY 504 N 1 HETATM 2 C C2 PTY . . . PA 13 131.666 171.492 155.07 1 48.36 ? C2 PTY 504 N 1 HETATM 3 C C3 PTY . . . PA 13 132.817 172.155 154.367 1 48.1 ? C3 PTY 504 N 1 HETATM 4 O O4 PTY . . . PA 13 136.058 170.203 148.521 1 85.82 ? O4 PTY 504 N 1 HETATM 5 C C5 PTY . . . PA 13 133.798 170.57 151.01 1 60.02 ? C5 PTY 504 N 1 HETATM 6 C C6 PTY . . . PA 13 134.158 171.064 149.632 1 68.36 ? C6 PTY 504 N 1 HETATM 7 O O7 PTY . . . PA 13 133.092 171.803 148.95 1 68.44 ? O7 PTY 504 N 1 HETATM 8 C C8 PTY . . . PA 13 133.401 172.575 147.88 1 73.6 ? C8 PTY 504 N 1 HETATM 9 O O10 PTY . . . PA 13 133.986 173.62 147.968 1 73.91 ? O10 PTY 504 N 1 HETATM 10 C C11 PTY . . . PA 13 132.94 172.056 146.548 1 78.05 ? C11 PTY 504 N 1 HETATM 11 C C12 PTY . . . PA 13 133.263 172.977 145.404 1 84.33 ? C12 PTY 504 N 1 HETATM 12 C C13 PTY . . . PA 13 134.121 172.322 144.335 1 87.9 ? C13 PTY 504 N 1 HETATM 13 C C14 PTY . . . PA 13 135.373 171.638 144.833 1 88.98 ? C14 PTY 504 N 1 HETATM 14 C C15 PTY . . . PA 13 136.553 171.726 143.872 1 93.22 ? C15 PTY 504 N 1 HETATM 15 C C16 PTY . . . PA 13 136.623 170.668 142.779 1 92.82 ? C16 PTY 504 N 1 HETATM 16 C C17 PTY . . . PA 13 136.879 171.198 141.37 1 93.26 ? C17 PTY 504 N 1 HETATM 17 C C18 PTY . . . PA 13 138.316 171.558 141.048 1 92.37 ? C18 PTY 504 N 1 HETATM 18 C C19 PTY . . . PA 13 139.1 170.465 140.359 1 95.7 ? C19 PTY 504 N 1 HETATM 19 C C20 PTY . . . PA 13 139.861 170.912 139.133 1 94.82 ? C20 PTY 504 N 1 HETATM 20 C C30 PTY . . . PA 13 136.833 169.145 148.717 1 96.74 ? C30 PTY 504 N 1 HETATM 21 C C31 PTY . . . PA 13 138.132 169.264 147.994 1 101.05 ? C31 PTY 504 N 1 HETATM 22 O O30 PTY . . . PA 13 136.502 168.21 149.399 1 104.09 ? O30 PTY 504 N 1 HETATM 23 C C32 PTY . . . PA 13 138.881 170.506 148.354 1 114.4 ? C32 PTY 504 N 1 HETATM 24 C C33 PTY . . . PA 13 139.706 171.032 147.196 1 118.2 ? C33 PTY 504 N 1 HETATM 25 C C34 PTY . . . PA 13 139.522 170.262 145.904 1 116.95 ? C34 PTY 504 N 1 HETATM 26 C C35 PTY . . . PA 13 140.761 169.546 145.387 1 115.73 ? C35 PTY 504 N 1 HETATM 27 C C36 PTY . . . PA 13 141.946 169.46 146.331 1 118.66 ? C36 PTY 504 N 1 HETATM 28 C C37 PTY . . . PA 13 143.254 169.762 145.651 1 121.34 ? C37 PTY 504 N 1 HETATM 29 C C38 PTY . . . PA 13 144.463 169.446 146.483 1 131.63 ? C38 PTY 504 N 1 HETATM 30 C C39 PTY . . . PA 13 145.588 168.767 145.746 1 135.29 ? C39 PTY 504 N 1 HETATM 31 C C40 PTY . . . PA 13 145.65 169.02 144.256 1 130.89 ? C40 PTY 504 N 1 HETATM 32 C C41 PTY . . . PA 13 146.031 167.781 143.496 1 130.71 ? C41 PTY 504 N 1 HETATM 33 C C42 PTY . . . PA 13 146.317 167.953 142.024 1 124.8 ? C42 PTY 504 N 1 HETATM 34 C C43 PTY . . . PA 13 146.737 166.612 141.473 1 122.41 ? C43 PTY 504 N 1 HETATM 35 C C44 PTY . . . PA 13 145.831 165.979 140.45 1 117.85 ? C44 PTY 504 N 1 HETATM 36 P P1 PTY . . . PA 13 135.04 171.164 153.262 1 53.01 ? P1 PTY 504 N 1 HETATM 37 O O11 PTY . . . PA 13 133.984 171.283 154.471 1 52.7 ? O11 PTY 504 N 1 HETATM 38 O O12 PTY . . . PA 13 136.159 172.13 153.526 1 54.17 ? O12 PTY 504 N 1 HETATM 39 O O13 PTY . . . PA 13 135.317 169.721 152.961 1 58.37 ? O13 PTY 504 N 1 HETATM 40 O O14 PTY . . . PA 13 134.249 171.599 151.934 1 59.36 ? O14 PTY 504 N 1 HETATM 41 N N1 PTY . . . PA 13 131.417 170.196 154.437 1 52.61 ? N1 PTY 504 N 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #