data_8AB8 # _model_server_result.job_id wRVeWbkaDJkopopi5Ry7Og _model_server_result.datetime_utc '2024-11-28 14:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ab8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":507}' # _entry.id 8AB8 # _exptl.entry_id 8AB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 322.439 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id AA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 HA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 MA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 DCQ doub 338 n n C2 C3 DCQ sing 339 n n C2 C1 DCQ sing 340 n n C3 O3 DCQ sing 341 n n C3 C4 DCQ doub 342 n n O3 C3M DCQ sing 343 n n C4 O4 DCQ sing 344 n n C4 C5 DCQ sing 345 n n O4 C4M DCQ sing 346 n n C5 O5 DCQ doub 347 n n C5 C6 DCQ sing 348 n n C1 C1M DCQ sing 349 n n C1 C6 DCQ doub 350 n n C6 C7 DCQ sing 351 n n C7 C8 DCQ sing 352 n n C8 C9 DCQ sing 353 n n C9 C10 DCQ sing 354 n n C10 C11 DCQ sing 355 n n C11 C12 DCQ sing 356 n n C12 C13 DCQ sing 357 n n C13 C14 DCQ sing 358 n n C14 C15 DCQ sing 359 n n C15 C16 DCQ sing 360 n n C3M H3M DCQ sing 361 n n C3M H3MA DCQ sing 362 n n C3M H3MB DCQ sing 363 n n C4M H4M DCQ sing 364 n n C4M H4MA DCQ sing 365 n n C4M H4MB DCQ sing 366 n n C1M H1M DCQ sing 367 n n C1M H1MA DCQ sing 368 n n C1M H1MB DCQ sing 369 n n C7 H7 DCQ sing 370 n n C7 H7A DCQ sing 371 n n C8 H8 DCQ sing 372 n n C8 H8A DCQ sing 373 n n C9 H9 DCQ sing 374 n n C9 H9A DCQ sing 375 n n C10 H10 DCQ sing 376 n n C10 H10A DCQ sing 377 n n C11 H11 DCQ sing 378 n n C11 H11A DCQ sing 379 n n C12 H12 DCQ sing 380 n n C12 H12A DCQ sing 381 n n C13 H13 DCQ sing 382 n n C13 H13A DCQ sing 383 n n C14 H14 DCQ sing 384 n n C14 H14A DCQ sing 385 n n C15 H15 DCQ sing 386 n n C15 H15A DCQ sing 387 n n C16 H16 DCQ sing 388 n n C16 H16A DCQ sing 389 n n C16 H16B DCQ sing 390 n n # _atom_sites.entry_id 8AB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 DCQ C 1 507 904 DCQ DCQ . BA 17 FES P 1 301 301 FES FES . CA 15 LMT P 1 302 502 LMT LMT . DA 13 PTY P 1 303 504 PTY PTY . EA 14 CDL A 1 3001 3001 CDL CDL . FA 14 CDL A 1 3002 3101 CDL CDL . GA 18 XP4 A 1 3003 101 XP4 XP4 . HA 19 HEC D 1 401 401 HEC HEC . IA 14 CDL H 1 701 701 CDL CDL . JA 14 CDL H 1 702 101 CDL CDL . KA 12 PC1 I 1 201 201 PC1 PC1 . LA 15 LMT J 1 101 102 LMT LMT . MA 11 HEM N 1 501 501 HEM HEM . NA 11 HEM N 1 502 502 HEM HEM . OA 12 PC1 N 1 503 601 PC1 PC1 . PA 13 PTY N 1 504 801 PTY PTY . QA 14 CDL N 1 505 901 CDL CDL . RA 15 LMT N 1 506 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 18 XP4 L 1 3003 101 XP4 XP4 . WA 19 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 701 701 CDL CDL . YA 14 CDL S 1 702 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . AA 16 127.63 135.626 121.426 1 114.48 ? O2 DCQ 507 C 1 HETATM 2 C C2 DCQ . . . AA 16 128.737 135.53 121.917 1 119.06 ? C2 DCQ 507 C 1 HETATM 3 C C3 DCQ . . . AA 16 129.81 134.974 121.113 1 121.16 ? C3 DCQ 507 C 1 HETATM 4 O O3 DCQ . . . AA 16 129.346 134.28 120.056 1 126.78 ? O3 DCQ 507 C 1 HETATM 5 C C3M DCQ . . . AA 16 129.456 134.633 118.78 1 134.2 ? C3M DCQ 507 C 1 HETATM 6 C C4 DCQ . . . AA 16 131.099 134.858 121.6 1 118.7 ? C4 DCQ 507 C 1 HETATM 7 O O4 DCQ . . . AA 16 132.066 134.547 120.841 1 114.53 ? O4 DCQ 507 C 1 HETATM 8 C C4M DCQ . . . AA 16 132.686 136.012 120.259 1 104.72 ? C4M DCQ 507 C 1 HETATM 9 C C5 DCQ . . . AA 16 131.376 135.305 122.981 1 116.56 ? C5 DCQ 507 C 1 HETATM 10 O O5 DCQ . . . AA 16 132.441 135.275 123.487 1 114.11 ? O5 DCQ 507 C 1 HETATM 11 C C1 DCQ . . . AA 16 129.093 136.01 123.262 1 120.78 ? C1 DCQ 507 C 1 HETATM 12 C C1M DCQ . . . AA 16 128.09 136.667 124.113 1 127.7 ? C1M DCQ 507 C 1 HETATM 13 C C6 DCQ . . . AA 16 130.246 135.793 123.75 1 116.68 ? C6 DCQ 507 C 1 HETATM 14 C C7 DCQ . . . AA 16 130.264 135.91 125.13 1 114.91 ? C7 DCQ 507 C 1 HETATM 15 C C8 DCQ . . . AA 16 131.004 136.847 126.043 1 119.96 ? C8 DCQ 507 C 1 HETATM 16 C C9 DCQ . . . AA 16 132.255 136.33 126.842 1 122.91 ? C9 DCQ 507 C 1 HETATM 17 C C10 DCQ . . . AA 16 133.207 137.567 127.031 1 130.08 ? C10 DCQ 507 C 1 HETATM 18 C C11 DCQ . . . AA 16 132.508 138.864 127.567 1 130.75 ? C11 DCQ 507 C 1 HETATM 19 C C12 DCQ . . . AA 16 132.133 138.768 129.058 1 139.4 ? C12 DCQ 507 C 1 HETATM 20 C C13 DCQ . . . AA 16 132.305 140.131 129.73 1 148.76 ? C13 DCQ 507 C 1 HETATM 21 C C14 DCQ . . . AA 16 132.002 140.018 131.251 1 152.78 ? C14 DCQ 507 C 1 HETATM 22 C C15 DCQ . . . AA 16 130.521 139.676 131.523 1 159.34 ? C15 DCQ 507 C 1 HETATM 23 C C16 DCQ . . . AA 16 130.107 140.188 132.885 1 162.64 ? C16 DCQ 507 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 107 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #