data_8ABB # _model_server_result.job_id toveJJUGUx2pFNOGJVve6Q _model_server_result.datetime_utc '2024-11-04 23:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":3002}' # _entry.id 8ABB # _exptl.entry_id 8ABB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 OA N N ? 14 QA N N ? 14 TA N N ? 14 UA N N ? 14 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 14 CDL N 1 504 701 CDL CDL . PA 13 PTY N 1 505 801 PTY PTY . QA 14 CDL N 1 506 901 CDL CDL . RA 15 LMT N 1 507 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 17 XP4 L 1 3003 101 XP4 XP4 . WA 18 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 101 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . EA 14 170.743 146.459 160.304 1 120.05 ? C1 CDL 3002 A 1 HETATM 2 O O1 CDL . . . EA 14 170.749 147.498 161.279 1 129.34 ? O1 CDL 3002 A 1 HETATM 3 C CA2 CDL . . . EA 14 169.496 145.619 160.443 1 105.52 ? CA2 CDL 3002 A 1 HETATM 4 O OA2 CDL . . . EA 14 169.312 145.061 159.128 1 88.45 ? OA2 CDL 3002 A 1 HETATM 5 P PA1 CDL . . . EA 14 169.2 143.476 158.907 1 74.07 ? PA1 CDL 3002 A 1 HETATM 6 O OA3 CDL . . . EA 14 169.746 142.544 159.949 1 74.74 ? OA3 CDL 3002 A 1 HETATM 7 O OA4 CDL . . . EA 14 167.792 143.318 158.4 1 73.6 ? OA4 CDL 3002 A 1 HETATM 8 O OA5 CDL . . . EA 14 170.339 143.325 157.794 1 76.76 ? OA5 CDL 3002 A 1 HETATM 9 C CA3 CDL . . . EA 14 170.361 144.26 156.691 1 82.76 ? CA3 CDL 3002 A 1 HETATM 10 C CA4 CDL . . . EA 14 170.409 143.403 155.445 1 91.27 ? CA4 CDL 3002 A 1 HETATM 11 O OA6 CDL . . . EA 14 171.805 143.056 155.178 1 91.68 ? OA6 CDL 3002 A 1 HETATM 12 C CA5 CDL . . . EA 14 172.554 143.802 154.35 1 95.46 ? CA5 CDL 3002 A 1 HETATM 13 O OA7 CDL . . . EA 14 172.729 144.99 154.495 1 103.58 ? OA7 CDL 3002 A 1 HETATM 14 C C11 CDL . . . EA 14 173.094 142.892 153.281 1 92.5 ? C11 CDL 3002 A 1 HETATM 15 C C12 CDL . . . EA 14 174.488 143.178 152.823 1 97.39 ? C12 CDL 3002 A 1 HETATM 16 C C13 CDL . . . EA 14 174.551 144.239 151.73 1 105.95 ? C13 CDL 3002 A 1 HETATM 17 C C14 CDL . . . EA 14 174.272 143.746 150.328 1 111.13 ? C14 CDL 3002 A 1 HETATM 18 C C15 CDL . . . EA 14 175.164 144.369 149.278 1 116.81 ? C15 CDL 3002 A 1 HETATM 19 C C16 CDL . . . EA 14 174.608 144.35 147.862 1 107.38 ? C16 CDL 3002 A 1 HETATM 20 C CA6 CDL . . . EA 14 169.625 143.941 154.261 1 109.58 ? CA6 CDL 3002 A 1 HETATM 21 O OA8 CDL . . . EA 14 168.219 143.644 154.454 1 128.7 ? OA8 CDL 3002 A 1 HETATM 22 C CA7 CDL . . . EA 14 167.561 143.009 153.478 1 134.6 ? CA7 CDL 3002 A 1 HETATM 23 O OA9 CDL . . . EA 14 168.104 142.338 152.633 1 140.42 ? OA9 CDL 3002 A 1 HETATM 24 C C31 CDL . . . EA 14 166.066 143.247 153.582 1 129.8 ? C31 CDL 3002 A 1 HETATM 25 C C32 CDL . . . EA 14 165.204 142.087 153.154 1 130.21 ? C32 CDL 3002 A 1 HETATM 26 C C33 CDL . . . EA 14 163.973 142.535 152.369 1 123.89 ? C33 CDL 3002 A 1 HETATM 27 C C34 CDL . . . EA 14 162.82 141.533 152.306 1 122.31 ? C34 CDL 3002 A 1 HETATM 28 C C35 CDL . . . EA 14 161.663 141.906 151.362 1 119.96 ? C35 CDL 3002 A 1 HETATM 29 C C36 CDL . . . EA 14 161.18 140.789 150.443 1 114.95 ? C36 CDL 3002 A 1 HETATM 30 C C37 CDL . . . EA 14 161.227 141.107 148.955 1 108.73 ? C37 CDL 3002 A 1 HETATM 31 C CB2 CDL . . . EA 14 172.007 145.648 160.432 1 129.48 ? CB2 CDL 3002 A 1 HETATM 32 O OB2 CDL . . . EA 14 172.874 146.013 159.349 1 138.29 ? OB2 CDL 3002 A 1 HETATM 33 P PB2 CDL . . . EA 14 174.198 145.142 159.108 1 144.18 ? PB2 CDL 3002 A 1 HETATM 34 O OB3 CDL . . . EA 14 175.164 145.428 160.225 1 145.13 ? OB3 CDL 3002 A 1 HETATM 35 O OB4 CDL . . . EA 14 173.719 143.738 158.849 1 144.86 ? OB4 CDL 3002 A 1 HETATM 36 O OB5 CDL . . . EA 14 174.764 145.795 157.761 1 144.3 ? OB5 CDL 3002 A 1 HETATM 37 C CB3 CDL . . . EA 14 174.493 147.197 157.517 1 146.31 ? CB3 CDL 3002 A 1 HETATM 38 C CB4 CDL . . . EA 14 175.373 147.643 156.379 1 139.01 ? CB4 CDL 3002 A 1 HETATM 39 O OB6 CDL . . . EA 14 175.995 146.493 155.741 1 127.02 ? OB6 CDL 3002 A 1 HETATM 40 C CB5 CDL . . . EA 14 176.461 146.666 154.493 1 127.6 ? CB5 CDL 3002 A 1 HETATM 41 O OB7 CDL . . . EA 14 175.923 147.423 153.722 1 138.37 ? OB7 CDL 3002 A 1 HETATM 42 C C51 CDL . . . EA 14 177.703 145.876 154.172 1 114.28 ? C51 CDL 3002 A 1 HETATM 43 C C52 CDL . . . EA 14 177.912 145.641 152.696 1 109.81 ? C52 CDL 3002 A 1 HETATM 44 C C53 CDL . . . EA 14 178.636 146.783 151.999 1 120.35 ? C53 CDL 3002 A 1 HETATM 45 C C54 CDL . . . EA 14 179.365 146.381 150.695 1 139.07 ? C54 CDL 3002 A 1 HETATM 46 C C55 CDL . . . EA 14 178.795 146.939 149.383 1 157.28 ? C55 CDL 3002 A 1 HETATM 47 C C56 CDL . . . EA 14 179.481 146.474 148.086 1 163.69 ? C56 CDL 3002 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #