data_8ABB
#
_model_server_result.job_id            PTMZ3iq9YyjgXe6a7VdL3w 
_model_server_result.datetime_utc      '2024-11-04 23:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8abb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":3002}' 
#
_entry.id    8ABB 
#
_exptl.entry_id    8ABB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ABB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ABB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 Y N N 
? 14 DA N N 
? 14 EA N N 
? 14 HA N N 
? 14 IA N N 
? 14 OA N N 
? 14 QA N N 
? 14 TA N N 
? 14 UA N N 
? 14 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     8ABB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 HEM C 1 501 501 HEM HEM . 
V 11 HEM C 1 502 502 HEM HEM . 
W 12 PC1 C 1 503 601 PC1 PC1 . 
X 13 PTY C 1 504 801 PTY PTY . 
Y 14 CDL C 1 505 901 CDL CDL . 
Z 15 LMT C 1 506 903 LMT LMT . 
AA 16 FES P 1 301 301 FES FES . 
BA 15 LMT P 1 302 502 LMT LMT . 
CA 13 PTY P 1 303 504 PTY PTY . 
DA 14 CDL A 1 3001 3001 CDL CDL . 
EA 14 CDL A 1 3002 3101 CDL CDL . 
FA 17 XP4 A 1 3003 101 XP4 XP4 . 
GA 18 HEC D 1 401 401 HEC HEC . 
HA 14 CDL H 1 701 701 CDL CDL . 
IA 14 CDL H 1 702 101 CDL CDL . 
JA 12 PC1 I 1 201 201 PC1 PC1 . 
KA 15 LMT J 1 101 102 LMT LMT . 
LA 11 HEM N 1 501 501 HEM HEM . 
MA 11 HEM N 1 502 502 HEM HEM . 
NA 12 PC1 N 1 503 601 PC1 PC1 . 
OA 14 CDL N 1 504 701 CDL CDL . 
PA 13 PTY N 1 505 801 PTY PTY . 
QA 14 CDL N 1 506 901 CDL CDL . 
RA 15 LMT N 1 507 903 LMT LMT . 
SA 13 PTY E 1 401 401 PTY PTY . 
TA 14 CDL L 1 3001 3001 CDL CDL . 
UA 14 CDL L 1 3002 3101 CDL CDL . 
VA 17 XP4 L 1 3003 101 XP4 XP4 . 
WA 18 HEC O 1 401 401 HEC HEC . 
XA 14 CDL S 1 101 101 CDL CDL . 
YA 12 PC1 T 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . UA 14 128.801 153.474 160.037 1 118.24 ? C1 CDL 3002 L 1 
HETATM 2 O O1 CDL . . . UA 14 128.795 152.389 160.964 1 127.99 ? O1 CDL 3002 L 1 
HETATM 3 C CA2 CDL . . . UA 14 130.019 154.343 160.242 1 101.33 ? CA2 CDL 3002 L 1 
HETATM 4 O OA2 CDL . . . UA 14 130.299 154.888 158.935 1 86.19 ? OA2 CDL 3002 L 1 
HETATM 5 P PA1 CDL . . . UA 14 130.358 156.472 158.683 1 73.52 ? PA1 CDL 3002 L 1 
HETATM 6 O OA3 CDL . . . UA 14 129.727 157.396 159.685 1 76.86 ? OA3 CDL 3002 L 1 
HETATM 7 O OA4 CDL . . . UA 14 131.752 156.712 158.172 1 76.59 ? OA4 CDL 3002 L 1 
HETATM 8 O OA5 CDL . . . UA 14 129.259 156.582 157.529 1 76.01 ? OA5 CDL 3002 L 1 
HETATM 9 C CA3 CDL . . . UA 14 129.264 155.614 156.458 1 75.38 ? CA3 CDL 3002 L 1 
HETATM 10 C CA4 CDL . . . UA 14 129.188 156.467 155.213 1 86.94 ? CA4 CDL 3002 L 1 
HETATM 11 O OA6 CDL . . . UA 14 127.795 156.837 154.945 1 87.02 ? OA6 CDL 3002 L 1 
HETATM 12 C CA5 CDL . . . UA 14 127.018 156.073 154.16 1 95.01 ? CA5 CDL 3002 L 1 
HETATM 13 O OA7 CDL . . . UA 14 126.802 154.898 154.339 1 106.51 ? OA7 CDL 3002 L 1 
HETATM 14 C C11 CDL . . . UA 14 126.461 156.924 153.071 1 93.63 ? C11 CDL 3002 L 1 
HETATM 15 C C12 CDL . . . UA 14 125.046 156.611 152.723 1 93.15 ? C12 CDL 3002 L 1 
HETATM 16 C C13 CDL . . . UA 14 124.914 155.707 151.497 1 102.43 ? C13 CDL 3002 L 1 
HETATM 17 C C14 CDL . . . UA 14 125.838 156.003 150.322 1 109.63 ? C14 CDL 3002 L 1 
HETATM 18 C C15 CDL . . . UA 14 125.139 156.196 148.976 1 118.4 ? C15 CDL 3002 L 1 
HETATM 19 C C16 CDL . . . UA 14 124.397 154.987 148.419 1 106.57 ? C16 CDL 3002 L 1 
HETATM 20 C CA6 CDL . . . UA 14 129.97 155.925 154.033 1 103.11 ? CA6 CDL 3002 L 1 
HETATM 21 O OA8 CDL . . . UA 14 131.383 156.147 154.271 1 116.42 ? OA8 CDL 3002 L 1 
HETATM 22 C CA7 CDL . . . UA 14 132.123 156.645 153.275 1 123.69 ? CA7 CDL 3002 L 1 
HETATM 23 O OA9 CDL . . . UA 14 131.659 156.997 152.215 1 128.32 ? OA9 CDL 3002 L 1 
HETATM 24 C C31 CDL . . . UA 14 133.596 156.704 153.656 1 122.17 ? C31 CDL 3002 L 1 
HETATM 25 C C32 CDL . . . UA 14 134.382 157.827 153.014 1 123.83 ? C32 CDL 3002 L 1 
HETATM 26 C C33 CDL . . . UA 14 135.596 157.308 152.237 1 117.86 ? C33 CDL 3002 L 1 
HETATM 27 C C34 CDL . . . UA 14 136.773 158.269 152.107 1 109.94 ? C34 CDL 3002 L 1 
HETATM 28 C C35 CDL . . . UA 14 137.916 157.783 151.204 1 104.86 ? C35 CDL 3002 L 1 
HETATM 29 C C36 CDL . . . UA 14 138.692 158.876 150.48 1 103.06 ? C36 CDL 3002 L 1 
HETATM 30 C C37 CDL . . . UA 14 138.688 158.781 148.958 1 95.46 ? C37 CDL 3002 L 1 
HETATM 31 C CB2 CDL . . . UA 14 127.519 154.255 160.172 1 122.88 ? CB2 CDL 3002 L 1 
HETATM 32 O OB2 CDL . . . UA 14 126.652 153.937 159.067 1 122.41 ? OB2 CDL 3002 L 1 
HETATM 33 P PB2 CDL . . . UA 14 125.323 154.814 158.891 1 121.13 ? PB2 CDL 3002 L 1 
HETATM 34 O OB3 CDL . . . UA 14 124.434 154.614 160.09 1 128.15 ? OB3 CDL 3002 L 1 
HETATM 35 O OB4 CDL . . . UA 14 125.799 156.192 158.529 1 128.49 ? OB4 CDL 3002 L 1 
HETATM 36 O OB5 CDL . . . UA 14 124.613 154.164 157.614 1 126.27 ? OB5 CDL 3002 L 1 
HETATM 37 C CB3 CDL . . . UA 14 124.304 152.75 157.634 1 134.9 ? CB3 CDL 3002 L 1 
HETATM 38 C CB4 CDL . . . UA 14 124.126 152.339 156.198 1 131.46 ? CB4 CDL 3002 L 1 
HETATM 39 O OB6 CDL . . . UA 14 123.464 153.455 155.542 1 127.18 ? OB6 CDL 3002 L 1 
HETATM 40 C CB5 CDL . . . UA 14 123.055 153.26 154.28 1 131.11 ? CB5 CDL 3002 L 1 
HETATM 41 O OB7 CDL . . . UA 14 123.6 152.438 153.586 1 146.52 ? OB7 CDL 3002 L 1 
HETATM 42 C C51 CDL . . . UA 14 121.882 154.104 153.855 1 117.34 ? C51 CDL 3002 L 1 
HETATM 43 C C52 CDL . . . UA 14 121.66 154.145 152.357 1 114.41 ? C52 CDL 3002 L 1 
HETATM 44 C C53 CDL . . . UA 14 120.872 152.952 151.822 1 125.43 ? C53 CDL 3002 L 1 
HETATM 45 C C54 CDL . . . UA 14 120.141 153.187 150.49 1 144.81 ? C54 CDL 3002 L 1 
HETATM 46 C C55 CDL . . . UA 14 121.005 153.121 149.23 1 163.25 ? C55 CDL 3002 L 1 
HETATM 47 C C56 CDL . . . UA 14 120.269 153.553 147.882 1 160.02 ? C56 CDL 3002 L 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#