data_8ABB # _model_server_result.job_id 8k3gv-QEFtHetmOU1TtBXw _model_server_result.datetime_utc '2024-11-04 23:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":401}' # _entry.id 8ABB # _exptl.entry_id 8ABB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 GA N N ? 18 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 14 CDL N 1 504 701 CDL CDL . PA 13 PTY N 1 505 801 PTY PTY . QA 14 CDL N 1 506 901 CDL CDL . RA 15 LMT N 1 507 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 17 XP4 L 1 3003 101 XP4 XP4 . WA 18 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 101 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . GA 18 143.4 123.284 95.167 1 38.42 ? FE HEC 401 D 1 HETATM 2 C CHA HEC . . . GA 18 140.874 124.262 97.22 1 41.35 ? CHA HEC 401 D 1 HETATM 3 C CHB HEC . . . GA 18 145.178 122.129 97.805 1 41.51 ? CHB HEC 401 D 1 HETATM 4 C CHC HEC . . . GA 18 145.664 121.882 93.037 1 45.92 ? CHC HEC 401 D 1 HETATM 5 C CHD HEC . . . GA 18 141.862 124.826 92.516 1 43.55 ? CHD HEC 401 D 1 HETATM 6 N NA HEC . . . GA 18 143.067 123.173 97.176 1 38.79 ? NA HEC 401 D 1 HETATM 7 C C1A HEC . . . GA 18 142.002 123.581 97.843 1 39.52 ? C1A HEC 401 D 1 HETATM 8 C C2A HEC . . . GA 18 142.07 123.337 99.293 1 41.14 ? C2A HEC 401 D 1 HETATM 9 C C3A HEC . . . GA 18 143.341 122.698 99.441 1 39.83 ? C3A HEC 401 D 1 HETATM 10 C C4A HEC . . . GA 18 143.844 122.621 98.073 1 40.02 ? C4A HEC 401 D 1 HETATM 11 C CMA HEC . . . GA 18 143.996 122.235 100.687 1 37.56 ? CMA HEC 401 D 1 HETATM 12 C CAA HEC . . . GA 18 141.233 123.653 100.457 1 44.26 ? CAA HEC 401 D 1 HETATM 13 C CBA HEC . . . GA 18 139.849 123.157 100.24 1 53.25 ? CBA HEC 401 D 1 HETATM 14 C CGA HEC . . . GA 18 139.167 123.752 101.449 1 59.85 ? CGA HEC 401 D 1 HETATM 15 O O1A HEC . . . GA 18 138.747 124.94 101.39 1 62.47 ? O1A HEC 401 D 1 HETATM 16 O O2A HEC . . . GA 18 139.059 123.051 102.49 1 59.14 ? O2A HEC 401 D 1 HETATM 17 N NB HEC . . . GA 18 145.125 122.231 95.404 1 43.57 ? NB HEC 401 D 1 HETATM 18 C C1B HEC . . . GA 18 145.719 121.855 96.512 1 45.52 ? C1B HEC 401 D 1 HETATM 19 C C2B HEC . . . GA 18 146.924 121.051 96.388 1 47.42 ? C2B HEC 401 D 1 HETATM 20 C C3B HEC . . . GA 18 146.995 121.016 94.951 1 47.97 ? C3B HEC 401 D 1 HETATM 21 C C4B HEC . . . GA 18 145.862 121.722 94.464 1 47.49 ? C4B HEC 401 D 1 HETATM 22 C CMB HEC . . . GA 18 147.779 120.484 97.469 1 50.31 ? CMB HEC 401 D 1 HETATM 23 C CAB HEC . . . GA 18 147.862 120.342 94.041 1 47.41 ? CAB HEC 401 D 1 HETATM 24 C CBB HEC . . . GA 18 148.994 119.55 94.551 1 48.33 ? CBB HEC 401 D 1 HETATM 25 N NC HEC . . . GA 18 143.718 123.333 93.14 1 42.14 ? NC HEC 401 D 1 HETATM 26 C C1C HEC . . . GA 18 144.694 122.762 92.445 1 44.17 ? C1C HEC 401 D 1 HETATM 27 C C2C HEC . . . GA 18 144.671 123 91.002 1 46.16 ? C2C HEC 401 D 1 HETATM 28 C C3C HEC . . . GA 18 143.495 123.828 90.912 1 47.76 ? C3C HEC 401 D 1 HETATM 29 C C4C HEC . . . GA 18 143.031 124.013 92.252 1 43.97 ? C4C HEC 401 D 1 HETATM 30 C CMC HEC . . . GA 18 145.587 122.518 89.922 1 50.75 ? CMC HEC 401 D 1 HETATM 31 C CAC HEC . . . GA 18 142.868 124.439 89.742 1 54.6 ? CAC HEC 401 D 1 HETATM 32 C CBC HEC . . . GA 18 143.46 124.23 88.379 1 63.17 ? CBC HEC 401 D 1 HETATM 33 N ND HEC . . . GA 18 141.658 124.363 94.902 1 44.79 ? ND HEC 401 D 1 HETATM 34 C C1D HEC . . . GA 18 141.196 124.945 93.791 1 45.42 ? C1D HEC 401 D 1 HETATM 35 C C2D HEC . . . GA 18 139.94 125.686 93.931 1 45.43 ? C2D HEC 401 D 1 HETATM 36 C C3D HEC . . . GA 18 139.648 125.519 95.33 1 47.19 ? C3D HEC 401 D 1 HETATM 37 C C4D HEC . . . GA 18 140.778 124.711 95.831 1 46.3 ? C4D HEC 401 D 1 HETATM 38 C CMD HEC . . . GA 18 139.129 126.429 92.934 1 49.83 ? CMD HEC 401 D 1 HETATM 39 C CAD HEC . . . GA 18 138.481 126.051 96.075 1 51.59 ? CAD HEC 401 D 1 HETATM 40 C CBD HEC . . . GA 18 137.458 124.939 96.016 1 61.14 ? CBD HEC 401 D 1 HETATM 41 C CGD HEC . . . GA 18 136.18 125.408 96.671 1 68.85 ? CGD HEC 401 D 1 HETATM 42 O O1D HEC . . . GA 18 135.095 124.929 96.25 1 71.37 ? O1D HEC 401 D 1 HETATM 43 O O2D HEC . . . GA 18 136.252 126.258 97.605 1 68.36 ? O2D HEC 401 D 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #