data_8ABB # _model_server_result.job_id 2cSvnfszNbthHBzg32kDlQ _model_server_result.datetime_utc '2024-11-04 23:33:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":501}' # _entry.id 8ABB # _exptl.entry_id 8ABB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ABB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 14 CDL N 1 504 701 CDL CDL . PA 13 PTY N 1 505 801 PTY PTY . QA 14 CDL N 1 506 901 CDL CDL . RA 15 LMT N 1 507 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 17 XP4 L 1 3003 101 XP4 XP4 . WA 18 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 101 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . U 11 146.611 138.498 121.791 1 31.55 ? CHA HEM 501 C 1 HETATM 2 C CHB HEM . . . U 11 144.849 137.304 126.147 1 34.05 ? CHB HEM 501 C 1 HETATM 3 C CHC HEM . . . U 11 147.779 140.565 128.142 1 33.49 ? CHC HEM 501 C 1 HETATM 4 C CHD HEM . . . U 11 149.201 141.972 123.827 1 32.77 ? CHD HEM 501 C 1 HETATM 5 C C1A HEM . . . U 11 145.966 137.877 122.831 1 34.4 ? C1A HEM 501 C 1 HETATM 6 C C2A HEM . . . U 11 145.039 136.808 122.646 1 36.12 ? C2A HEM 501 C 1 HETATM 7 C C3A HEM . . . U 11 144.555 136.488 123.857 1 35.07 ? C3A HEM 501 C 1 HETATM 8 C C4A HEM . . . U 11 145.13 137.342 124.804 1 34.9 ? C4A HEM 501 C 1 HETATM 9 C CMA HEM . . . U 11 143.549 135.433 124.12 1 35.65 ? CMA HEM 501 C 1 HETATM 10 C CAA HEM . . . U 11 144.67 136.082 121.381 1 37.89 ? CAA HEM 501 C 1 HETATM 11 C CBA HEM . . . U 11 145.926 135.242 121.136 1 45.59 ? CBA HEM 501 C 1 HETATM 12 C CGA HEM . . . U 11 145.979 134.462 119.842 1 55.22 ? CGA HEM 501 C 1 HETATM 13 O O1A HEM . . . U 11 146.872 134.716 118.995 1 54.56 ? O1A HEM 501 C 1 HETATM 14 O O2A HEM . . . U 11 145.167 133.506 119.634 1 56.46 ? O2A HEM 501 C 1 HETATM 15 C C1B HEM . . . U 11 145.537 138.091 127.066 1 33.69 ? C1B HEM 501 C 1 HETATM 16 C C2B HEM . . . U 11 145.328 137.969 128.477 1 33.5 ? C2B HEM 501 C 1 HETATM 17 C C3B HEM . . . U 11 146.178 138.906 129.018 1 34.19 ? C3B HEM 501 C 1 HETATM 18 C C4B HEM . . . U 11 146.858 139.579 127.909 1 33.07 ? C4B HEM 501 C 1 HETATM 19 C CMB HEM . . . U 11 144.374 137.03 129.186 1 31.23 ? CMB HEM 501 C 1 HETATM 20 C CAB HEM . . . U 11 146.438 139.291 130.397 1 33.26 ? CAB HEM 501 C 1 HETATM 21 C CBB HEM . . . U 11 145.55 139.004 131.31 1 37.07 ? CBB HEM 501 C 1 HETATM 22 C C1C HEM . . . U 11 148.385 141.252 127.121 1 34.87 ? C1C HEM 501 C 1 HETATM 23 C C2C HEM . . . U 11 149.222 142.371 127.317 1 37.43 ? C2C HEM 501 C 1 HETATM 24 C C3C HEM . . . U 11 149.647 142.781 126.103 1 37.55 ? C3C HEM 501 C 1 HETATM 25 C C4C HEM . . . U 11 149.023 141.898 125.154 1 33.21 ? C4C HEM 501 C 1 HETATM 26 C CMC HEM . . . U 11 149.64 143.063 128.602 1 36.57 ? CMC HEM 501 C 1 HETATM 27 C CAC HEM . . . U 11 150.513 143.986 126.02 1 42.33 ? CAC HEM 501 C 1 HETATM 28 C CBC HEM . . . U 11 150.345 144.615 124.902 1 53.27 ? CBC HEM 501 C 1 HETATM 29 C C1D HEM . . . U 11 148.576 141.092 122.958 1 33.05 ? C1D HEM 501 C 1 HETATM 30 C C2D HEM . . . U 11 148.819 141.225 121.506 1 33.82 ? C2D HEM 501 C 1 HETATM 31 C C3D HEM . . . U 11 148.071 140.249 120.934 1 32.71 ? C3D HEM 501 C 1 HETATM 32 C C4D HEM . . . U 11 147.406 139.563 122.039 1 30.3 ? C4D HEM 501 C 1 HETATM 33 C CMD HEM . . . U 11 149.726 142.27 120.852 1 32.81 ? CMD HEM 501 C 1 HETATM 34 C CAD HEM . . . U 11 147.895 139.96 119.48 1 35.18 ? CAD HEM 501 C 1 HETATM 35 C CBD HEM . . . U 11 149.024 139.15 118.933 1 46.56 ? CBD HEM 501 C 1 HETATM 36 C CGD HEM . . . U 11 148.556 137.721 119.051 1 56.9 ? CGD HEM 501 C 1 HETATM 37 O O1D HEM . . . U 11 147.427 137.27 118.693 1 52.92 ? O1D HEM 501 C 1 HETATM 38 O O2D HEM . . . U 11 149.389 136.943 119.536 1 64.5 ? O2D HEM 501 C 1 HETATM 39 N NA HEM . . . U 11 145.965 138.193 124.163 1 33.14 ? NA HEM 501 C 1 HETATM 40 N NB HEM . . . U 11 146.449 139.026 126.789 1 31.74 ? NB HEM 501 C 1 HETATM 41 N NC HEM . . . U 11 148.282 140.98 125.82 1 33.01 ? NC HEM 501 C 1 HETATM 42 N ND HEM . . . U 11 147.724 140.087 123.223 1 31.62 ? ND HEM 501 C 1 HETATM 43 FE FE HEM . . . U 11 147.108 139.557 124.906 1 31.24 ? FE HEM 501 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #