data_8ABB # _model_server_result.job_id 5JDQ7SZUUtmvMqOwJGGZrA _model_server_result.datetime_utc '2024-11-04 23:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":505}' # _entry.id 8ABB # _exptl.entry_id 8ABB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 CA N N ? 13 PA N N ? 13 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 14 CDL N 1 504 701 CDL CDL . PA 13 PTY N 1 505 801 PTY PTY . QA 14 CDL N 1 506 901 CDL CDL . RA 15 LMT N 1 507 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 17 XP4 L 1 3003 101 XP4 XP4 . WA 18 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 101 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . PA 13 133.564 168.773 147.494 1 92.69 ? C1 PTY 505 N 1 HETATM 2 C C2 PTY . . . PA 13 130.624 169.95 153.925 1 87.48 ? C2 PTY 505 N 1 HETATM 3 C C3 PTY . . . PA 13 131.715 170.717 153.216 1 87.83 ? C3 PTY 505 N 1 HETATM 4 O O4 PTY . . . PA 13 134.981 168.947 147.324 1 108.24 ? O4 PTY 505 N 1 HETATM 5 C C5 PTY . . . PA 13 132.653 169.408 149.694 1 81.38 ? C5 PTY 505 N 1 HETATM 6 C C6 PTY . . . PA 13 133.107 169.916 148.353 1 84.68 ? C6 PTY 505 N 1 HETATM 7 O O7 PTY . . . PA 13 132.127 170.763 147.66 1 91.64 ? O7 PTY 505 N 1 HETATM 8 C C8 PTY . . . PA 13 132.482 171.463 146.55 1 95.07 ? C8 PTY 505 N 1 HETATM 9 O O10 PTY . . . PA 13 133.121 172.479 146.572 1 99.67 ? O10 PTY 505 N 1 HETATM 10 C C11 PTY . . . PA 13 131.968 170.931 145.246 1 91.91 ? C11 PTY 505 N 1 HETATM 11 C C12 PTY . . . PA 13 132.453 171.703 144.062 1 92.38 ? C12 PTY 505 N 1 HETATM 12 C C13 PTY . . . PA 13 133.233 170.85 143.087 1 98.24 ? C13 PTY 505 N 1 HETATM 13 C C14 PTY . . . PA 13 134.53 170.301 143.619 1 109.83 ? C14 PTY 505 N 1 HETATM 14 C C15 PTY . . . PA 13 135.67 170.358 142.624 1 119.18 ? C15 PTY 505 N 1 HETATM 15 C C16 PTY . . . PA 13 135.657 169.309 141.538 1 123.96 ? C16 PTY 505 N 1 HETATM 16 C C17 PTY . . . PA 13 135.981 169.823 140.124 1 125.88 ? C17 PTY 505 N 1 HETATM 17 C C18 PTY . . . PA 13 137.451 170.169 139.812 1 128.9 ? C18 PTY 505 N 1 HETATM 18 C C19 PTY . . . PA 13 138.23 169.199 138.901 1 125.89 ? C19 PTY 505 N 1 HETATM 19 C C20 PTY . . . PA 13 138.476 169.692 137.492 1 127.02 ? C20 PTY 505 N 1 HETATM 20 C C30 PTY . . . PA 13 135.714 167.862 147.525 1 121.13 ? C30 PTY 505 N 1 HETATM 21 C C31 PTY . . . PA 13 137.022 167.953 146.812 1 122.13 ? C31 PTY 505 N 1 HETATM 22 O O30 PTY . . . PA 13 135.356 166.945 148.213 1 131.13 ? O30 PTY 505 N 1 HETATM 23 C C32 PTY . . . PA 13 137.777 169.198 147.171 1 136.4 ? C32 PTY 505 N 1 HETATM 24 C C33 PTY . . . PA 13 138.633 169.717 146.026 1 135.03 ? C33 PTY 505 N 1 HETATM 25 C C34 PTY . . . PA 13 138.443 168.982 144.715 1 129.39 ? C34 PTY 505 N 1 HETATM 26 C C35 PTY . . . PA 13 139.681 168.27 144.222 1 125.48 ? C35 PTY 505 N 1 HETATM 27 C C36 PTY . . . PA 13 140.834 168.233 145.199 1 132.01 ? C36 PTY 505 N 1 HETATM 28 C C37 PTY . . . PA 13 142.139 168.528 144.535 1 153.38 ? C37 PTY 505 N 1 HETATM 29 C C38 PTY . . . PA 13 143.332 168.187 145.381 1 174.95 ? C38 PTY 505 N 1 HETATM 30 C C39 PTY . . . PA 13 144.429 167.501 144.608 1 173.12 ? C39 PTY 505 N 1 HETATM 31 C C40 PTY . . . PA 13 144.407 167.742 143.114 1 155.33 ? C40 PTY 505 N 1 HETATM 32 C C41 PTY . . . PA 13 144.826 166.514 142.363 1 156.86 ? C41 PTY 505 N 1 HETATM 33 C C42 PTY . . . PA 13 145.138 166.679 140.9 1 150.05 ? C42 PTY 505 N 1 HETATM 34 C C43 PTY . . . PA 13 145.542 165.317 140.375 1 145.62 ? C43 PTY 505 N 1 HETATM 35 C C44 PTY . . . PA 13 144.647 164.668 139.348 1 124.41 ? C44 PTY 505 N 1 HETATM 36 P P1 PTY . . . PA 13 133.913 169.83 151.969 1 78.08 ? P1 PTY 505 N 1 HETATM 37 O O11 PTY . . . PA 13 132.932 169.911 153.241 1 86.13 ? O11 PTY 505 N 1 HETATM 38 O O12 PTY . . . PA 13 135.055 170.753 152.264 1 72.11 ? O12 PTY 505 N 1 HETATM 39 O O13 PTY . . . PA 13 134.141 168.383 151.632 1 84.23 ? O13 PTY 505 N 1 HETATM 40 O O14 PTY . . . PA 13 133.079 170.365 150.704 1 86.72 ? O14 PTY 505 N 1 HETATM 41 N N1 PTY . . . PA 13 130.37 168.64 153.316 1 86.91 ? N1 PTY 505 N 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #