data_8ABB # _model_server_result.job_id woQPZm_s3W2r4uji9cx2pg _model_server_result.datetime_utc '2024-11-04 23:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":505}' # _entry.id 8ABB # _exptl.entry_id 8ABB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 OA N N ? 14 QA N N ? 14 TA N N ? 14 UA N N ? 14 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 WA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 14 CDL N 1 504 701 CDL CDL . PA 13 PTY N 1 505 801 PTY PTY . QA 14 CDL N 1 506 901 CDL CDL . RA 15 LMT N 1 507 903 LMT LMT . SA 13 PTY E 1 401 401 PTY PTY . TA 14 CDL L 1 3001 3001 CDL CDL . UA 14 CDL L 1 3002 3101 CDL CDL . VA 17 XP4 L 1 3003 101 XP4 XP4 . WA 18 HEC O 1 401 401 HEC HEC . XA 14 CDL S 1 101 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . Y 14 134.275 143.257 158.306 1 156.27 ? C1 CDL 505 C 1 HETATM 2 O O1 CDL . . . Y 14 135.325 142.334 157.994 1 134.72 ? O1 CDL 505 C 1 HETATM 3 C CA2 CDL . . . Y 14 133.025 142.942 157.517 1 148.05 ? CA2 CDL 505 C 1 HETATM 4 O OA2 CDL . . . Y 14 133.178 141.626 156.934 1 144.99 ? OA2 CDL 505 C 1 HETATM 5 P PA1 CDL . . . Y 14 132.536 141.266 155.505 1 137.34 ? PA1 CDL 505 C 1 HETATM 6 O OA3 CDL . . . Y 14 133.304 142.065 154.487 1 144.2 ? OA3 CDL 505 C 1 HETATM 7 O OA4 CDL . . . Y 14 132.491 139.768 155.391 1 123.64 ? OA4 CDL 505 C 1 HETATM 8 O OA5 CDL . . . Y 14 131.016 141.781 155.617 1 128.5 ? OA5 CDL 505 C 1 HETATM 9 C CA3 CDL . . . Y 14 130.64 143.053 155.015 1 114.37 ? CA3 CDL 505 C 1 HETATM 10 C CA4 CDL . . . Y 14 130.053 142.821 153.641 1 99.3 ? CA4 CDL 505 C 1 HETATM 11 O OA6 CDL . . . Y 14 130.396 144.006 152.852 1 84.48 ? OA6 CDL 505 C 1 HETATM 12 C CA5 CDL . . . Y 14 131.129 143.884 151.722 1 84.08 ? CA5 CDL 505 C 1 HETATM 13 O OA7 CDL . . . Y 14 132.324 143.733 151.724 1 91.22 ? OA7 CDL 505 C 1 HETATM 14 C C11 CDL . . . Y 14 130.374 144.007 150.424 1 81.45 ? C11 CDL 505 C 1 HETATM 15 C C12 CDL . . . Y 14 131.272 144.176 149.235 1 85.01 ? C12 CDL 505 C 1 HETATM 16 C C13 CDL . . . Y 14 130.617 144.944 148.091 1 106.87 ? C13 CDL 505 C 1 HETATM 17 C C14 CDL . . . Y 14 129.877 144.089 147.055 1 128.82 ? C14 CDL 505 C 1 HETATM 18 C C15 CDL . . . Y 14 129.036 144.863 146.03 1 137.51 ? C15 CDL 505 C 1 HETATM 19 C C16 CDL . . . Y 14 129.473 144.692 144.59 1 140.02 ? C16 CDL 505 C 1 HETATM 20 C CA6 CDL . . . Y 14 128.571 142.503 153.718 1 100.88 ? CA6 CDL 505 C 1 HETATM 21 O OA8 CDL . . . Y 14 128.002 142.447 152.394 1 97.85 ? OA8 CDL 505 C 1 HETATM 22 C CA7 CDL . . . Y 14 127.274 141.382 152.079 1 99.11 ? CA7 CDL 505 C 1 HETATM 23 O OA9 CDL . . . Y 14 127.237 140.382 152.76 1 100.65 ? OA9 CDL 505 C 1 HETATM 24 C C31 CDL . . . Y 14 126.509 141.65 150.802 1 97.64 ? C31 CDL 505 C 1 HETATM 25 C C32 CDL . . . Y 14 127.089 141.03 149.555 1 92.44 ? C32 CDL 505 C 1 HETATM 26 C C33 CDL . . . Y 14 127.113 141.972 148.341 1 101.35 ? C33 CDL 505 C 1 HETATM 27 C C34 CDL . . . Y 14 125.787 142.062 147.573 1 123.22 ? C34 CDL 505 C 1 HETATM 28 C C35 CDL . . . Y 14 125.861 142.313 146.05 1 140.33 ? C35 CDL 505 C 1 HETATM 29 C C36 CDL . . . Y 14 124.5 142.416 145.329 1 151.6 ? C36 CDL 505 C 1 HETATM 30 C C37 CDL . . . Y 14 124.553 142.525 143.804 1 149.48 ? C37 CDL 505 C 1 HETATM 31 C CB2 CDL . . . Y 14 134.731 144.681 158.095 1 183.69 ? CB2 CDL 505 C 1 HETATM 32 O OB2 CDL . . . Y 14 133.573 145.539 157.828 1 203.3 ? OB2 CDL 505 C 1 HETATM 33 P PB2 CDL . . . Y 14 133.767 146.885 156.977 1 208.16 ? PB2 CDL 505 C 1 HETATM 34 O OB3 CDL . . . Y 14 133.224 147.969 157.867 1 207.8 ? OB3 CDL 505 C 1 HETATM 35 O OB4 CDL . . . Y 14 135.229 146.883 156.59 1 204.2 ? OB4 CDL 505 C 1 HETATM 36 O OB5 CDL . . . Y 14 132.764 146.626 155.742 1 187.01 ? OB5 CDL 505 C 1 HETATM 37 C CB3 CDL . . . Y 14 131.801 147.651 155.31 1 156.21 ? CB3 CDL 505 C 1 HETATM 38 C CB4 CDL . . . Y 14 131.487 147.496 153.829 1 152.61 ? CB4 CDL 505 C 1 HETATM 39 O OB6 CDL . . . Y 14 132.601 147.548 152.852 1 130.93 ? OB6 CDL 505 C 1 HETATM 40 C CB5 CDL . . . Y 14 133.171 148.705 152.421 1 120.77 ? CB5 CDL 505 C 1 HETATM 41 O OB7 CDL . . . Y 14 133.425 149.6 153.185 1 127.92 ? OB7 CDL 505 C 1 HETATM 42 C C51 CDL . . . Y 14 133.525 148.724 150.925 1 117.82 ? C51 CDL 505 C 1 HETATM 43 C C52 CDL . . . Y 14 134.707 149.602 150.52 1 96.65 ? C52 CDL 505 C 1 HETATM 44 C CB6 CDL . . . Y 14 130.189 148.16 153.381 1 164.15 ? CB6 CDL 505 C 1 HETATM 45 O OB8 CDL . . . Y 14 129.06 147.451 153.962 1 168.58 ? OB8 CDL 505 C 1 HETATM 46 C CB7 CDL . . . Y 14 128.067 146.997 153.169 1 163.97 ? CB7 CDL 505 C 1 HETATM 47 O OB9 CDL . . . Y 14 128.13 146.877 151.965 1 148.39 ? OB9 CDL 505 C 1 HETATM 48 C C71 CDL . . . Y 14 126.837 146.607 153.965 1 155.6 ? C71 CDL 505 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #