data_8ABE # _model_server_result.job_id wwjJph6_ceyIG11kShOZ1g _model_server_result.datetime_utc '2024-11-04 22:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":201}' # _entry.id 8ABE # _exptl.entry_id 8ABE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 JA N N ? 12 MA N N ? 12 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 8ABE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEM N 1 501 501 HEM HEM . LA 11 HEM N 1 502 502 HEM HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 13 PTY N 1 504 801 PTY PTY . OA 14 CDL N 1 505 901 CDL CDL . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 18 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . YA 12 130.383 174 151.539 1 53.42 ? O12 PC1 201 T 1 HETATM 2 P P PC1 . . . YA 12 129.887 172.591 151.447 1 49.09 ? P PC1 201 T 1 HETATM 3 O O14 PC1 . . . YA 12 130.53 171.499 152.249 1 50.79 ? O14 PC1 201 T 1 HETATM 4 O O13 PC1 . . . YA 12 128.326 172.601 151.818 1 50.89 ? O13 PC1 201 T 1 HETATM 5 C C11 PC1 . . . YA 12 127.93 172.036 153.085 1 51.03 ? C11 PC1 201 T 1 HETATM 6 C C12 PC1 . . . YA 12 127.083 173.033 153.83 1 46.51 ? C12 PC1 201 T 1 HETATM 7 N N PC1 . . . YA 12 125.714 173.313 153.244 1 45.38 ? N PC1 201 T 1 HETATM 8 C C13 PC1 . . . YA 12 125.779 174.33 152.158 1 45.12 ? C13 PC1 201 T 1 HETATM 9 C C14 PC1 . . . YA 12 125.081 172.084 152.694 1 44.41 ? C14 PC1 201 T 1 HETATM 10 C C15 PC1 . . . YA 12 124.881 173.828 154.343 1 44.66 ? C15 PC1 201 T 1 HETATM 11 O O11 PC1 . . . YA 12 129.818 172.118 149.923 1 51.89 ? O11 PC1 201 T 1 HETATM 12 C C1 PC1 . . . YA 12 128.963 170.994 149.674 1 55.44 ? C1 PC1 201 T 1 HETATM 13 C C2 PC1 . . . YA 12 128.993 170.48 148.265 1 59.25 ? C2 PC1 201 T 1 HETATM 14 O O21 PC1 . . . YA 12 130.226 169.751 148.024 1 62.1 ? O21 PC1 201 T 1 HETATM 15 C C21 PC1 . . . YA 12 130.202 168.425 148.212 1 65.44 ? C21 PC1 201 T 1 HETATM 16 O O22 PC1 . . . YA 12 129.258 167.883 148.702 1 62.93 ? O22 PC1 201 T 1 HETATM 17 C C22 PC1 . . . YA 12 131.396 167.72 147.653 1 72.29 ? C22 PC1 201 T 1 HETATM 18 C C23 PC1 . . . YA 12 131.43 167.814 146.155 1 81.81 ? C23 PC1 201 T 1 HETATM 19 C C24 PC1 . . . YA 12 132.631 168.589 145.626 1 89.09 ? C24 PC1 201 T 1 HETATM 20 C C25 PC1 . . . YA 12 132.502 169.084 144.196 1 99.7 ? C25 PC1 201 T 1 HETATM 21 C C3 PC1 . . . YA 12 128.876 171.58 147.254 1 61.24 ? C3 PC1 201 T 1 HETATM 22 O O31 PC1 . . . YA 12 130.015 171.476 146.382 1 66.62 ? O31 PC1 201 T 1 HETATM 23 C C31 PC1 . . . YA 12 129.754 171.479 145.078 1 69.04 ? C31 PC1 201 T 1 HETATM 24 O O32 PC1 . . . YA 12 130.02 172.402 144.36 1 70.93 ? O32 PC1 201 T 1 HETATM 25 C C32 PC1 . . . YA 12 129.07 170.222 144.618 1 73.9 ? C32 PC1 201 T 1 HETATM 26 C C33 PC1 . . . YA 12 127.973 170.456 143.628 1 80.51 ? C33 PC1 201 T 1 HETATM 27 C C34 PC1 . . . YA 12 128.283 169.87 142.263 1 85.25 ? C34 PC1 201 T 1 HETATM 28 C C35 PC1 . . . YA 12 129.601 170.343 141.662 1 85.39 ? C35 PC1 201 T 1 HETATM 29 C C36 PC1 . . . YA 12 130.474 169.227 141.129 1 84.91 ? C36 PC1 201 T 1 HETATM 30 C C37 PC1 . . . YA 12 131.861 169.653 140.669 1 82.58 ? C37 PC1 201 T 1 HETATM 31 C C38 PC1 . . . YA 12 132.613 168.606 139.869 1 81.48 ? C38 PC1 201 T 1 HETATM 32 C C39 PC1 . . . YA 12 134.082 168.909 139.62 1 78.63 ? C39 PC1 201 T 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #