data_8ABE # _model_server_result.job_id 5QskTHPFs4Wm_viizqdbLA _model_server_result.datetime_utc '2024-11-04 22:32:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":401}' # _entry.id 8ABE # _exptl.entry_id 8ABE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 GA N N ? 18 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEM N 1 501 501 HEM HEM . LA 11 HEM N 1 502 502 HEM HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 13 PTY N 1 504 801 PTY PTY . OA 14 CDL N 1 505 901 CDL CDL . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 18 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . VA 18 158.109 176.568 95.573 1 35.35 ? FE HEC 401 O 1 HETATM 2 C CHA HEC . . . VA 18 160.571 175.582 97.669 1 36.74 ? CHA HEC 401 O 1 HETATM 3 C CHB HEC . . . VA 18 156.346 177.804 98.202 1 35.25 ? CHB HEC 401 O 1 HETATM 4 C CHC HEC . . . VA 18 155.821 177.889 93.469 1 35.83 ? CHC HEC 401 O 1 HETATM 5 C CHD HEC . . . VA 18 159.691 174.996 92.937 1 37.16 ? CHD HEC 401 O 1 HETATM 6 N NA HEC . . . VA 18 158.418 176.706 97.616 1 36.75 ? NA HEC 401 O 1 HETATM 7 C C1A HEC . . . VA 18 159.457 176.271 98.286 1 36.65 ? C1A HEC 401 O 1 HETATM 8 C C2A HEC . . . VA 18 159.422 176.523 99.716 1 36.56 ? C2A HEC 401 O 1 HETATM 9 C C3A HEC . . . VA 18 158.158 177.2 99.894 1 35.84 ? C3A HEC 401 O 1 HETATM 10 C C4A HEC . . . VA 18 157.658 177.289 98.522 1 36.39 ? C4A HEC 401 O 1 HETATM 11 C CMA HEC . . . VA 18 157.572 177.711 101.169 1 36.5 ? CMA HEC 401 O 1 HETATM 12 C CAA HEC . . . VA 18 160.396 176.149 100.765 1 37.56 ? CAA HEC 401 O 1 HETATM 13 C CBA HEC . . . VA 18 161.631 177.015 100.793 1 39.91 ? CBA HEC 401 O 1 HETATM 14 C CGA HEC . . . VA 18 162.298 176.46 102.039 1 41.58 ? CGA HEC 401 O 1 HETATM 15 O O1A HEC . . . VA 18 162.723 175.283 102.052 1 42.21 ? O1A HEC 401 O 1 HETATM 16 O O2A HEC . . . VA 18 162.39 177.153 103.063 1 42.79 ? O2A HEC 401 O 1 HETATM 17 N NB HEC . . . VA 18 156.382 177.632 95.794 1 36.64 ? NB HEC 401 O 1 HETATM 18 C C1B HEC . . . VA 18 155.828 178.064 96.892 1 35.95 ? C1B HEC 401 O 1 HETATM 19 C C2B HEC . . . VA 18 154.616 178.845 96.77 1 37.23 ? C2B HEC 401 O 1 HETATM 20 C C3B HEC . . . VA 18 154.521 178.838 95.318 1 37.74 ? C3B HEC 401 O 1 HETATM 21 C C4B HEC . . . VA 18 155.63 178.104 94.856 1 36.11 ? C4B HEC 401 O 1 HETATM 22 C CMB HEC . . . VA 18 153.787 179.392 97.901 1 36.73 ? CMB HEC 401 O 1 HETATM 23 C CAB HEC . . . VA 18 153.657 179.456 94.348 1 39.52 ? CAB HEC 401 O 1 HETATM 24 C CBB HEC . . . VA 18 152.496 180.298 94.725 1 38.7 ? CBB HEC 401 O 1 HETATM 25 N NC HEC . . . VA 18 157.777 176.463 93.552 1 37.11 ? NC HEC 401 O 1 HETATM 26 C C1C HEC . . . VA 18 156.783 177.016 92.879 1 37.58 ? C1C HEC 401 O 1 HETATM 27 C C2C HEC . . . VA 18 156.801 176.741 91.444 1 38.15 ? C2C HEC 401 O 1 HETATM 28 C C3C HEC . . . VA 18 158.001 175.913 91.35 1 38.25 ? C3C HEC 401 O 1 HETATM 29 C C4C HEC . . . VA 18 158.496 175.776 92.675 1 37.46 ? C4C HEC 401 O 1 HETATM 30 C CMC HEC . . . VA 18 155.861 177.182 90.381 1 36.22 ? CMC HEC 401 O 1 HETATM 31 C CAC HEC . . . VA 18 158.666 175.275 90.213 1 38.74 ? CAC HEC 401 O 1 HETATM 32 C CBC HEC . . . VA 18 158.113 175.392 88.835 1 39.07 ? CBC HEC 401 O 1 HETATM 33 N ND HEC . . . VA 18 159.827 175.446 95.335 1 36.9 ? ND HEC 401 O 1 HETATM 34 C C1D HEC . . . VA 18 160.296 174.896 94.227 1 36.39 ? C1D HEC 401 O 1 HETATM 35 C C2D HEC . . . VA 18 161.536 174.174 94.368 1 37.7 ? C2D HEC 401 O 1 HETATM 36 C C3D HEC . . . VA 18 161.84 174.353 95.775 1 37.77 ? C3D HEC 401 O 1 HETATM 37 C C4D HEC . . . VA 18 160.706 175.143 96.278 1 37.44 ? C4D HEC 401 O 1 HETATM 38 C CMD HEC . . . VA 18 162.331 173.449 93.349 1 35.32 ? CMD HEC 401 O 1 HETATM 39 C CAD HEC . . . VA 18 163.005 173.794 96.493 1 38.42 ? CAD HEC 401 O 1 HETATM 40 C CBD HEC . . . VA 18 163.923 174.973 96.586 1 39.39 ? CBD HEC 401 O 1 HETATM 41 C CGD HEC . . . VA 18 165.147 174.575 97.348 1 40.71 ? CGD HEC 401 O 1 HETATM 42 O O1D HEC . . . VA 18 166.257 174.968 96.94 1 42.73 ? O1D HEC 401 O 1 HETATM 43 O O2D HEC . . . VA 18 165.015 173.872 98.37 1 43.3 ? O2D HEC 401 O 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #