data_8ABF # _model_server_result.job_id CO5uGMFg2-dXWxeVdntJoA _model_server_result.datetime_utc '2024-11-04 22:44:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":102}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 BA N N ? 15 KA N N ? 15 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . KA 15 172.168 129.63 119.886 1 113.26 ? C1B LMT 102 J 1 HETATM 2 C C2B LMT . . . KA 15 172.523 128.994 118.537 1 118.48 ? C2B LMT 102 J 1 HETATM 3 C C3B LMT . . . KA 15 171.43 129.331 117.498 1 121.84 ? C3B LMT 102 J 1 HETATM 4 C C4B LMT . . . KA 15 169.988 129.027 117.962 1 123.49 ? C4B LMT 102 J 1 HETATM 5 C C5B LMT . . . KA 15 169.769 129.448 119.429 1 122.5 ? C5B LMT 102 J 1 HETATM 6 C C6B LMT . . . KA 15 168.493 128.863 120.039 1 123.8 ? C6B LMT 102 J 1 HETATM 7 O O1B LMT . . . KA 15 172.112 131.043 119.664 1 103.13 ? O1B LMT 102 J 1 HETATM 8 O O2B LMT . . . KA 15 173.787 129.514 118.103 1 119.05 ? O2B LMT 102 J 1 HETATM 9 O O3B LMT . . . KA 15 171.691 128.698 116.243 1 123.62 ? O3B LMT 102 J 1 HETATM 10 O O4' LMT . . . KA 15 169.073 129.721 117.092 1 126.13 ? O4' LMT 102 J 1 HETATM 11 O O5B LMT . . . KA 15 170.891 129.111 120.29 1 118.27 ? O5B LMT 102 J 1 HETATM 12 O O6B LMT . . . KA 15 168.712 128.795 121.452 1 124.25 ? O6B LMT 102 J 1 HETATM 13 C C1' LMT . . . KA 15 173.07 134.558 121.291 1 85.52 ? C1' LMT 102 J 1 HETATM 14 C C2' LMT . . . KA 15 174.273 133.631 121.215 1 86.98 ? C2' LMT 102 J 1 HETATM 15 C C3' LMT . . . KA 15 173.882 132.459 120.355 1 90.15 ? C3' LMT 102 J 1 HETATM 16 C C4' LMT . . . KA 15 172.531 131.86 120.767 1 93.83 ? C4' LMT 102 J 1 HETATM 17 C C5' LMT . . . KA 15 171.423 132.858 121.178 1 89.74 ? C5' LMT 102 J 1 HETATM 18 C C6' LMT . . . KA 15 170.466 132.188 122.147 1 85.78 ? C6' LMT 102 J 1 HETATM 19 O O1' LMT . . . KA 15 173.313 135.592 122.178 1 81.71 ? O1' LMT 102 J 1 HETATM 20 O O2' LMT . . . KA 15 175.378 134.274 120.579 1 90.24 ? O2' LMT 102 J 1 HETATM 21 O O3' LMT . . . KA 15 174.887 131.449 120.508 1 90.4 ? O3' LMT 102 J 1 HETATM 22 O O5' LMT . . . KA 15 171.908 133.993 121.893 1 86.28 ? O5' LMT 102 J 1 HETATM 23 O O6' LMT . . . KA 15 169.626 133.206 122.68 1 91.17 ? O6' LMT 102 J 1 HETATM 24 C C1 LMT . . . KA 15 172.24 136.468 121.898 1 81.08 ? C1 LMT 102 J 1 HETATM 25 C C2 LMT . . . KA 15 171.889 137.117 123.197 1 76.11 ? C2 LMT 102 J 1 HETATM 26 C C3 LMT . . . KA 15 173.236 137.257 123.854 1 76.59 ? C3 LMT 102 J 1 HETATM 27 C C4 LMT . . . KA 15 173.153 138.371 124.876 1 77.31 ? C4 LMT 102 J 1 HETATM 28 C C5 LMT . . . KA 15 171.945 139.304 124.801 1 73.05 ? C5 LMT 102 J 1 HETATM 29 C C6 LMT . . . KA 15 171.714 140.079 126.121 1 76.71 ? C6 LMT 102 J 1 HETATM 30 C C7 LMT . . . KA 15 172.772 139.875 127.217 1 78.54 ? C7 LMT 102 J 1 HETATM 31 C C8 LMT . . . KA 15 172.284 140.193 128.636 1 84.13 ? C8 LMT 102 J 1 HETATM 32 C C9 LMT . . . KA 15 173.149 141.255 129.316 1 90.51 ? C9 LMT 102 J 1 HETATM 33 C C10 LMT . . . KA 15 173.595 140.906 130.743 1 100.06 ? C10 LMT 102 J 1 HETATM 34 C C11 LMT . . . KA 15 172.452 140.758 131.749 1 105.75 ? C11 LMT 102 J 1 HETATM 35 C C12 LMT . . . KA 15 172.483 141.854 132.792 1 110.72 ? C12 LMT 102 J 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #