data_8ABF # _model_server_result.job_id tgud1g-9BYlK_CnOYTKYnA _model_server_result.datetime_utc '2024-11-04 22:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":3001}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 GA N N ? 14 HA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 WA N N ? 14 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . DA 14 170.731 141.077 158.041 1 44.34 ? C1 CDL 3001 A 1 HETATM 2 O O1 CDL . . . DA 14 171.294 141.089 159.354 1 44.37 ? O1 CDL 3001 A 1 HETATM 3 C CA2 CDL . . . DA 14 169.259 141.359 158.113 1 44.85 ? CA2 CDL 3001 A 1 HETATM 4 O OA2 CDL . . . DA 14 168.702 140.09 158.479 1 48.66 ? OA2 CDL 3001 A 1 HETATM 5 P PA1 CDL . . . DA 14 167.119 139.958 158.606 1 48.61 ? PA1 CDL 3001 A 1 HETATM 6 O OA3 CDL . . . DA 14 166.593 141.217 159.234 1 51.91 ? OA3 CDL 3001 A 1 HETATM 7 O OA4 CDL . . . DA 14 166.946 138.654 159.329 1 53.51 ? OA4 CDL 3001 A 1 HETATM 8 O OA5 CDL . . . DA 14 166.665 139.848 157.067 1 54.89 ? OA5 CDL 3001 A 1 HETATM 9 C CA3 CDL . . . DA 14 166.89 138.599 156.372 1 61.41 ? CA3 CDL 3001 A 1 HETATM 10 C CA4 CDL . . . DA 14 167.394 138.837 154.967 1 69.21 ? CA4 CDL 3001 A 1 HETATM 11 O OA6 CDL . . . DA 14 167.936 140.165 154.705 1 69.44 ? OA6 CDL 3001 A 1 HETATM 12 C CA6 CDL . . . DA 14 166.333 138.576 153.927 1 74.77 ? CA6 CDL 3001 A 1 HETATM 13 O OA8 CDL . . . DA 14 166.03 137.163 153.924 1 77.55 ? OA8 CDL 3001 A 1 HETATM 14 C CA7 CDL . . . DA 14 165.686 136.626 152.751 1 81.08 ? CA7 CDL 3001 A 1 HETATM 15 O OA9 CDL . . . DA 14 166.456 135.99 152.071 1 79.54 ? OA9 CDL 3001 A 1 HETATM 16 C C31 CDL . . . DA 14 164.216 136.892 152.411 1 81.68 ? C31 CDL 3001 A 1 HETATM 17 C C32 CDL . . . DA 14 163.79 136.528 150.992 1 82.77 ? C32 CDL 3001 A 1 HETATM 18 C C33 CDL . . . DA 14 162.309 136.837 150.687 1 80.79 ? C33 CDL 3001 A 1 HETATM 19 C C34 CDL . . . DA 14 161.745 136.167 149.437 1 81.87 ? C34 CDL 3001 A 1 HETATM 20 C C35 CDL . . . DA 14 160.373 136.686 148.968 1 86.36 ? C35 CDL 3001 A 1 HETATM 21 C C36 CDL . . . DA 14 160.072 136.502 147.484 1 90.78 ? C36 CDL 3001 A 1 HETATM 22 C C37 CDL . . . DA 14 158.763 137.119 146.996 1 93.88 ? C37 CDL 3001 A 1 HETATM 23 C CB2 CDL . . . DA 14 171.044 139.777 157.344 1 42.57 ? CB2 CDL 3001 A 1 HETATM 24 O OB2 CDL . . . DA 14 172.467 139.874 157.082 1 43.25 ? OB2 CDL 3001 A 1 HETATM 25 P PB2 CDL . . . DA 14 173.18 138.803 156.122 1 37.5 ? PB2 CDL 3001 A 1 HETATM 26 O OB3 CDL . . . DA 14 172.644 137.425 156.391 1 41.12 ? OB3 CDL 3001 A 1 HETATM 27 O OB4 CDL . . . DA 14 174.667 138.961 156.249 1 41.12 ? OB4 CDL 3001 A 1 HETATM 28 O OB5 CDL . . . DA 14 172.67 139.193 154.645 1 43.85 ? OB5 CDL 3001 A 1 HETATM 29 C CB3 CDL . . . DA 14 172.668 140.581 154.188 1 48.52 ? CB3 CDL 3001 A 1 HETATM 30 C CB4 CDL . . . DA 14 172.827 140.649 152.682 1 53.26 ? CB4 CDL 3001 A 1 HETATM 31 O OB6 CDL . . . DA 14 172.191 141.902 152.282 1 56.04 ? OB6 CDL 3001 A 1 HETATM 32 C CB6 CDL . . . DA 14 172.259 139.432 151.965 1 58.14 ? CB6 CDL 3001 A 1 HETATM 33 O OB8 CDL . . . DA 14 172.979 138.954 150.794 1 61.35 ? OB8 CDL 3001 A 1 HETATM 34 C CB7 CDL . . . DA 14 174.297 139.134 150.632 1 65.4 ? CB7 CDL 3001 A 1 HETATM 35 O OB9 CDL . . . DA 14 175.003 139.782 151.352 1 69.02 ? OB9 CDL 3001 A 1 HETATM 36 C C71 CDL . . . DA 14 174.816 138.49 149.385 1 67.27 ? C71 CDL 3001 A 1 HETATM 37 C C72 CDL . . . DA 14 173.915 137.457 148.82 1 68.13 ? C72 CDL 3001 A 1 HETATM 38 C C73 CDL . . . DA 14 173.556 137.76 147.383 1 69.81 ? C73 CDL 3001 A 1 HETATM 39 C C74 CDL . . . DA 14 174.136 136.794 146.381 1 70.23 ? C74 CDL 3001 A 1 HETATM 40 C C75 CDL . . . DA 14 173.261 136.557 145.156 1 73.64 ? C75 CDL 3001 A 1 HETATM 41 C C76 CDL . . . DA 14 174.02 136.33 143.854 1 78.96 ? C76 CDL 3001 A 1 HETATM 42 C C77 CDL . . . DA 14 173.16 136.021 142.631 1 78.33 ? C77 CDL 3001 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 42 #