data_8ABF # _model_server_result.job_id xAvBDgjlGzfek836NwHDzg _model_server_result.datetime_utc '2024-11-04 22:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":401}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 CA N N ? 13 OA N N ? 13 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . RA 13 166.578 126.224 128.902 1 70.5 ? C1 PTY 401 E 1 HETATM 2 C C2 PTY . . . RA 13 172.069 129.449 126.97 1 76.99 ? C2 PTY 401 E 1 HETATM 3 C C3 PTY . . . RA 13 171.129 129.555 125.798 1 78.11 ? C3 PTY 401 E 1 HETATM 4 O O4 PTY . . . RA 13 165.506 126.455 129.835 1 71.78 ? O4 PTY 401 E 1 HETATM 5 C C5 PTY . . . RA 13 167.126 126.379 126.464 1 72.75 ? C5 PTY 401 E 1 HETATM 6 C C6 PTY . . . RA 13 166.119 126.687 127.55 1 73.58 ? C6 PTY 401 E 1 HETATM 7 O O7 PTY . . . RA 13 165.803 128.106 127.596 1 76.73 ? O7 PTY 401 E 1 HETATM 8 C C8 PTY . . . RA 13 164.778 128.555 126.852 1 77.55 ? C8 PTY 401 E 1 HETATM 9 O O10 PTY . . . RA 13 164.329 127.988 125.893 1 81.23 ? O10 PTY 401 E 1 HETATM 10 C C11 PTY . . . RA 13 164.248 129.852 127.355 1 75.82 ? C11 PTY 401 E 1 HETATM 11 C C12 PTY . . . RA 13 163.925 129.78 128.797 1 76.21 ? C12 PTY 401 E 1 HETATM 12 C C13 PTY . . . RA 13 162.453 129.853 129.066 1 74.22 ? C13 PTY 401 E 1 HETATM 13 C C14 PTY . . . RA 13 161.951 128.683 129.855 1 72.25 ? C14 PTY 401 E 1 HETATM 14 C C15 PTY . . . RA 13 160.974 129.026 130.954 1 73.32 ? C15 PTY 401 E 1 HETATM 15 C C16 PTY . . . RA 13 160.96 130.472 131.43 1 73.58 ? C16 PTY 401 E 1 HETATM 16 C C17 PTY . . . RA 13 159.57 131.058 131.635 1 72.02 ? C17 PTY 401 E 1 HETATM 17 C C18 PTY . . . RA 13 159.533 132.588 131.77 1 71.4 ? C18 PTY 401 E 1 HETATM 18 C C19 PTY . . . RA 13 158.845 133.356 130.639 1 70.13 ? C19 PTY 401 E 1 HETATM 19 C C20 PTY . . . RA 13 159.13 134.863 130.584 1 67.18 ? C20 PTY 401 E 1 HETATM 20 C C30 PTY . . . RA 13 165.895 126.594 131.089 1 72.67 ? C30 PTY 401 E 1 HETATM 21 C C31 PTY . . . RA 13 165.102 127.634 131.748 1 74.21 ? C31 PTY 401 E 1 HETATM 22 O O30 PTY . . . RA 13 166.813 125.987 131.571 1 77.77 ? O30 PTY 401 E 1 HETATM 23 C C32 PTY . . . RA 13 164.22 127.136 132.789 1 74.38 ? C32 PTY 401 E 1 HETATM 24 C C33 PTY . . . RA 13 164.54 127.824 134.081 1 80.04 ? C33 PTY 401 E 1 HETATM 25 C C34 PTY . . . RA 13 163.327 128.127 134.898 1 84.37 ? C34 PTY 401 E 1 HETATM 26 C C35 PTY . . . RA 13 163.309 129.48 135.484 1 90.71 ? C35 PTY 401 E 1 HETATM 27 C C36 PTY . . . RA 13 164.536 129.83 136.28 1 93.02 ? C36 PTY 401 E 1 HETATM 28 C C37 PTY . . . RA 13 164.725 131.308 136.279 1 95 ? C37 PTY 401 E 1 HETATM 29 C C38 PTY . . . RA 13 164.087 131.973 135.071 1 96.51 ? C38 PTY 401 E 1 HETATM 30 C C39 PTY . . . RA 13 163.514 133.372 135.271 1 97.15 ? C39 PTY 401 E 1 HETATM 31 C C40 PTY . . . RA 13 164.507 134.401 135.724 1 98.87 ? C40 PTY 401 E 1 HETATM 32 C C41 PTY . . . RA 13 164.577 135.64 134.868 1 102.34 ? C41 PTY 401 E 1 HETATM 33 C C42 PTY . . . RA 13 165.204 136.825 135.569 1 109.32 ? C42 PTY 401 E 1 HETATM 34 C C43 PTY . . . RA 13 166.202 136.601 136.701 1 117.72 ? C43 PTY 401 E 1 HETATM 35 C C44 PTY . . . RA 13 167.611 137.154 136.543 1 120.9 ? C44 PTY 401 E 1 HETATM 36 P P1 PTY . . . RA 13 169.405 127.543 125.856 1 72.81 ? P1 PTY 401 E 1 HETATM 37 O O11 PTY . . . RA 13 169.811 129.063 126.172 1 77.29 ? O11 PTY 401 E 1 HETATM 38 O O12 PTY . . . RA 13 169.793 127.187 124.446 1 75.48 ? O12 PTY 401 E 1 HETATM 39 O O13 PTY . . . RA 13 169.904 126.732 127.019 1 79.8 ? O13 PTY 401 E 1 HETATM 40 O O14 PTY . . . RA 13 167.803 127.569 125.983 1 73.69 ? O14 PTY 401 E 1 HETATM 41 N N1 PTY . . . RA 13 172.874 128.231 126.894 1 77 ? N1 PTY 401 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 41 #