data_8ABF # _model_server_result.job_id 6-IizjuetDK5NrU_s3dB7g _model_server_result.datetime_utc '2024-11-04 22:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":401}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 FA N N ? 17 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . VA 17 157.975 176.696 95.682 1 34.99 ? FE HEC 401 O 1 HETATM 2 C CHA HEC . . . VA 17 160.44 175.722 97.793 1 35.4 ? CHA HEC 401 O 1 HETATM 3 C CHB HEC . . . VA 17 156.221 177.953 98.309 1 35.05 ? CHB HEC 401 O 1 HETATM 4 C CHC HEC . . . VA 17 155.703 178.078 93.547 1 36.9 ? CHC HEC 401 O 1 HETATM 5 C CHD HEC . . . VA 17 159.571 175.153 93.046 1 36.04 ? CHD HEC 401 O 1 HETATM 6 N NA HEC . . . VA 17 158.275 176.843 97.725 1 35.38 ? NA HEC 401 O 1 HETATM 7 C C1A HEC . . . VA 17 159.328 176.436 98.402 1 35.62 ? C1A HEC 401 O 1 HETATM 8 C C2A HEC . . . VA 17 159.292 176.698 99.839 1 35.83 ? C2A HEC 401 O 1 HETATM 9 C C3A HEC . . . VA 17 158.018 177.366 100.005 1 35.98 ? C3A HEC 401 O 1 HETATM 10 C C4A HEC . . . VA 17 157.518 177.415 98.631 1 35.05 ? C4A HEC 401 O 1 HETATM 11 C CMA HEC . . . VA 17 157.396 177.899 101.251 1 35.9 ? CMA HEC 401 O 1 HETATM 12 C CAA HEC . . . VA 17 160.26 176.292 100.88 1 35.97 ? CAA HEC 401 O 1 HETATM 13 C CBA HEC . . . VA 17 161.501 177.146 100.914 1 38.81 ? CBA HEC 401 O 1 HETATM 14 C CGA HEC . . . VA 17 162.175 176.558 102.138 1 39.92 ? CGA HEC 401 O 1 HETATM 15 O O1A HEC . . . VA 17 162.543 175.364 102.108 1 40.07 ? O1A HEC 401 O 1 HETATM 16 O O2A HEC . . . VA 17 162.317 177.224 103.182 1 40.74 ? O2A HEC 401 O 1 HETATM 17 N NB HEC . . . VA 17 156.275 177.802 95.896 1 36 ? NB HEC 401 O 1 HETATM 18 C C1B HEC . . . VA 17 155.713 178.226 96.994 1 34.99 ? C1B HEC 401 O 1 HETATM 19 C C2B HEC . . . VA 17 154.486 178.971 96.884 1 36.01 ? C2B HEC 401 O 1 HETATM 20 C C3B HEC . . . VA 17 154.409 178.991 95.437 1 37.11 ? C3B HEC 401 O 1 HETATM 21 C C4B HEC . . . VA 17 155.52 178.274 94.961 1 36.39 ? C4B HEC 401 O 1 HETATM 22 C CMB HEC . . . VA 17 153.679 179.534 98.021 1 35.78 ? CMB HEC 401 O 1 HETATM 23 C CAB HEC . . . VA 17 153.539 179.594 94.475 1 37.24 ? CAB HEC 401 O 1 HETATM 24 C CBB HEC . . . VA 17 152.39 180.437 94.844 1 38.01 ? CBB HEC 401 O 1 HETATM 25 N NC HEC . . . VA 17 157.649 176.617 93.657 1 37.15 ? NC HEC 401 O 1 HETATM 26 C C1C HEC . . . VA 17 156.676 177.191 92.963 1 37.58 ? C1C HEC 401 O 1 HETATM 27 C C2C HEC . . . VA 17 156.715 176.931 91.517 1 38.09 ? C2C HEC 401 O 1 HETATM 28 C C3C HEC . . . VA 17 157.914 176.099 91.441 1 38.81 ? C3C HEC 401 O 1 HETATM 29 C C4C HEC . . . VA 17 158.381 175.944 92.78 1 37.22 ? C4C HEC 401 O 1 HETATM 30 C CMC HEC . . . VA 17 155.782 177.406 90.444 1 38.02 ? CMC HEC 401 O 1 HETATM 31 C CAC HEC . . . VA 17 158.597 175.448 90.312 1 38.45 ? CAC HEC 401 O 1 HETATM 32 C CBC HEC . . . VA 17 158.069 175.59 88.928 1 38.37 ? CBC HEC 401 O 1 HETATM 33 N ND HEC . . . VA 17 159.722 175.623 95.45 1 36.04 ? ND HEC 401 O 1 HETATM 34 C C1D HEC . . . VA 17 160.2 175.058 94.339 1 36.66 ? C1D HEC 401 O 1 HETATM 35 C C2D HEC . . . VA 17 161.457 174.353 94.499 1 37 ? C2D HEC 401 O 1 HETATM 36 C C3D HEC . . . VA 17 161.714 174.509 95.925 1 36.88 ? C3D HEC 401 O 1 HETATM 37 C C4D HEC . . . VA 17 160.578 175.295 96.408 1 36.04 ? C4D HEC 401 O 1 HETATM 38 C CMD HEC . . . VA 17 162.282 173.614 93.497 1 37.41 ? CMD HEC 401 O 1 HETATM 39 C CAD HEC . . . VA 17 162.88 173.966 96.655 1 38.5 ? CAD HEC 401 O 1 HETATM 40 C CBD HEC . . . VA 17 163.855 175.095 96.679 1 40.11 ? CBD HEC 401 O 1 HETATM 41 C CGD HEC . . . VA 17 165.079 174.655 97.426 1 41.64 ? CGD HEC 401 O 1 HETATM 42 O O1D HEC . . . VA 17 166.171 175.109 97.056 1 42.93 ? O1D HEC 401 O 1 HETATM 43 O O2D HEC . . . VA 17 164.974 173.869 98.392 1 44.25 ? O2D HEC 401 O 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #