data_8ABF # _model_server_result.job_id 6IWRx4OkA5-fvSiRpQtS-w _model_server_result.datetime_utc '2024-11-04 22:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":502}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . MA 11 157.809 166.344 148.517 1 25.79 ? CHA HEM 502 N 1 HETATM 2 C CHB HEM . . . MA 11 155.36 165.032 144.474 1 25.27 ? CHB HEM 502 N 1 HETATM 3 C CHC HEM . . . MA 11 159.51 164.666 142.038 1 24.86 ? CHC HEM 502 N 1 HETATM 4 C CHD HEM . . . MA 11 161.992 165.404 146.189 1 25.44 ? CHD HEM 502 N 1 HETATM 5 C C1A HEM . . . MA 11 156.819 166.121 147.557 1 26.07 ? C1A HEM 502 N 1 HETATM 6 C C2A HEM . . . MA 11 155.442 166.22 147.836 1 27.57 ? C2A HEM 502 N 1 HETATM 7 C C3A HEM . . . MA 11 154.753 165.855 146.719 1 27.16 ? C3A HEM 502 N 1 HETATM 8 C C4A HEM . . . MA 11 155.696 165.488 145.737 1 25.56 ? C4A HEM 502 N 1 HETATM 9 C CMA HEM . . . MA 11 153.251 165.87 146.514 1 24.64 ? CMA HEM 502 N 1 HETATM 10 C CAA HEM . . . MA 11 154.83 166.693 149.133 1 29.44 ? CAA HEM 502 N 1 HETATM 11 C CBA HEM . . . MA 11 154.335 168.141 148.911 1 34.43 ? CBA HEM 502 N 1 HETATM 12 C CGA HEM . . . MA 11 155.416 169.122 148.519 1 38.21 ? CGA HEM 502 N 1 HETATM 13 O O1A HEM . . . MA 11 155.43 169.737 147.43 1 39.58 ? O1A HEM 502 N 1 HETATM 14 O O2A HEM . . . MA 11 156.389 169.363 149.288 1 42.42 ? O2A HEM 502 N 1 HETATM 15 C C1B HEM . . . MA 11 156.33 164.79 143.49 1 24.71 ? C1B HEM 502 N 1 HETATM 16 C C2B HEM . . . MA 11 155.966 164.355 142.178 1 25.52 ? C2B HEM 502 N 1 HETATM 17 C C3B HEM . . . MA 11 157.151 164.281 141.475 1 25.4 ? C3B HEM 502 N 1 HETATM 18 C C4B HEM . . . MA 11 158.196 164.621 142.437 1 24.95 ? C4B HEM 502 N 1 HETATM 19 C CMB HEM . . . MA 11 154.545 164.107 141.666 1 24.58 ? CMB HEM 502 N 1 HETATM 20 C CAB HEM . . . MA 11 157.453 163.913 140.07 1 26.75 ? CAB HEM 502 N 1 HETATM 21 C CBB HEM . . . MA 11 156.689 163.059 139.401 1 27.85 ? CBB HEM 502 N 1 HETATM 22 C C1C HEM . . . MA 11 160.507 164.932 142.947 1 24.75 ? C1C HEM 502 N 1 HETATM 23 C C2C HEM . . . MA 11 161.859 165.08 142.621 1 25.21 ? C2C HEM 502 N 1 HETATM 24 C C3C HEM . . . MA 11 162.521 165.272 143.83 1 25.63 ? C3C HEM 502 N 1 HETATM 25 C C4C HEM . . . MA 11 161.583 165.259 144.887 1 25.35 ? C4C HEM 502 N 1 HETATM 26 C CMC HEM . . . MA 11 162.473 164.989 141.227 1 25.17 ? CMC HEM 502 N 1 HETATM 27 C CAC HEM . . . MA 11 163.979 165.423 144.087 1 26.09 ? CAC HEM 502 N 1 HETATM 28 C CBC HEM . . . MA 11 164.995 165.495 143.236 1 25.28 ? CBC HEM 502 N 1 HETATM 29 C C1D HEM . . . MA 11 160.985 165.659 147.116 1 25.23 ? C1D HEM 502 N 1 HETATM 30 C C2D HEM . . . MA 11 161.356 165.983 148.492 1 26.1 ? C2D HEM 502 N 1 HETATM 31 C C3D HEM . . . MA 11 160.203 166.293 149.11 1 27.07 ? C3D HEM 502 N 1 HETATM 32 C C4D HEM . . . MA 11 159.132 166.115 148.137 1 25.06 ? C4D HEM 502 N 1 HETATM 33 C CMD HEM . . . MA 11 162.752 166.057 149.101 1 24.94 ? CMD HEM 502 N 1 HETATM 34 C CAD HEM . . . MA 11 160.074 166.704 150.544 1 29.2 ? CAD HEM 502 N 1 HETATM 35 C CBD HEM . . . MA 11 160.116 168.232 150.525 1 33.96 ? CBD HEM 502 N 1 HETATM 36 C CGD HEM . . . MA 11 159.63 168.805 151.839 1 37.76 ? CGD HEM 502 N 1 HETATM 37 O O1D HEM . . . MA 11 160.44 169.397 152.543 1 38.06 ? O1D HEM 502 N 1 HETATM 38 O O2D HEM . . . MA 11 158.416 168.81 152.169 1 43.87 ? O2D HEM 502 N 1 HETATM 39 N NA HEM . . . MA 11 156.941 165.643 146.26 1 25.29 ? NA HEM 502 N 1 HETATM 40 N NB HEM . . . MA 11 157.643 164.902 143.603 1 24.63 ? NB HEM 502 N 1 HETATM 41 N NC HEM . . . MA 11 160.377 165.061 144.288 1 24.5 ? NC HEM 502 N 1 HETATM 42 N ND HEM . . . MA 11 159.654 165.765 146.939 1 25.1 ? ND HEM 502 N 1 HETATM 43 FE FE HEM . . . MA 11 158.671 165.39 145.359 1 24.64 ? FE HEM 502 N 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #