data_8ABF # _model_server_result.job_id Si7U7rimmoSzIGYn8pHelQ _model_server_result.datetime_utc '2024-11-04 22:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":505}' # _entry.id 8ABF # _exptl.entry_id 8ABF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 GA N N ? 14 HA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 WA N N ? 14 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 FA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 HEC D 1 401 401 HEC HEC . GA 14 CDL H 1 701 701 CDL CDL . HA 14 CDL H 1 702 101 CDL CDL . IA 12 PC1 I 1 201 201 PC1 PC1 . JA 18 XP4 J 1 101 101 XP4 XP4 . KA 15 LMT J 1 102 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 XP4 L 1 3003 101 XP4 XP4 . VA 17 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 701 701 CDL CDL . XA 14 CDL S 1 702 101 CDL CDL . YA 12 PC1 T 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . Y 14 135.347 144.413 159.65 1 102.2 ? C1 CDL 505 C 1 HETATM 2 O O1 CDL . . . Y 14 136.323 143.412 159.378 1 100.05 ? O1 CDL 505 C 1 HETATM 3 C CA2 CDL . . . Y 14 134.179 144.193 158.721 1 96.81 ? CA2 CDL 505 C 1 HETATM 4 O OA2 CDL . . . Y 14 134.335 142.842 158.218 1 88.12 ? OA2 CDL 505 C 1 HETATM 5 P PA1 CDL . . . Y 14 133.741 142.419 156.784 1 80.22 ? PA1 CDL 505 C 1 HETATM 6 O OA3 CDL . . . Y 14 134.472 143.224 155.749 1 87.34 ? OA3 CDL 505 C 1 HETATM 7 O OA4 CDL . . . Y 14 133.691 140.922 156.674 1 82.13 ? OA4 CDL 505 C 1 HETATM 8 O OA5 CDL . . . Y 14 132.227 142.961 156.768 1 82.47 ? OA5 CDL 505 C 1 HETATM 9 C CA3 CDL . . . Y 14 131.947 144.252 156.155 1 77.33 ? CA3 CDL 505 C 1 HETATM 10 C CA4 CDL . . . Y 14 131.254 144.073 154.832 1 74.04 ? CA4 CDL 505 C 1 HETATM 11 O OA6 CDL . . . Y 14 131.678 145.257 154.099 1 73 ? OA6 CDL 505 C 1 HETATM 12 C CA5 CDL . . . Y 14 132.356 145.132 152.943 1 72.31 ? CA5 CDL 505 C 1 HETATM 13 O OA7 CDL . . . Y 14 133.542 144.955 152.882 1 75.48 ? OA7 CDL 505 C 1 HETATM 14 C C11 CDL . . . Y 14 131.534 145.265 151.703 1 72.06 ? C11 CDL 505 C 1 HETATM 15 C C12 CDL . . . Y 14 132.385 145.421 150.491 1 71.54 ? C12 CDL 505 C 1 HETATM 16 C C13 CDL . . . Y 14 131.622 145.99 149.3 1 74.19 ? C13 CDL 505 C 1 HETATM 17 C C14 CDL . . . Y 14 130.787 145.002 148.474 1 74.32 ? C14 CDL 505 C 1 HETATM 18 C C15 CDL . . . Y 14 130.043 145.59 147.263 1 77.51 ? C15 CDL 505 C 1 HETATM 19 C C16 CDL . . . Y 14 130.885 145.765 146.017 1 80.8 ? C16 CDL 505 C 1 HETATM 20 C CA6 CDL . . . Y 14 129.757 143.871 154.971 1 72.83 ? CA6 CDL 505 C 1 HETATM 21 O OA8 CDL . . . Y 14 129.186 143.693 153.656 1 75.99 ? OA8 CDL 505 C 1 HETATM 22 C CA7 CDL . . . Y 14 128.466 142.598 153.408 1 76.87 ? CA7 CDL 505 C 1 HETATM 23 O OA9 CDL . . . Y 14 128.517 141.582 154.061 1 79.3 ? OA9 CDL 505 C 1 HETATM 24 C C31 CDL . . . Y 14 127.586 142.801 152.203 1 77.23 ? C31 CDL 505 C 1 HETATM 25 C C32 CDL . . . Y 14 128.022 142.041 150.978 1 78.47 ? C32 CDL 505 C 1 HETATM 26 C C33 CDL . . . Y 14 128.014 142.903 149.718 1 83.76 ? C33 CDL 505 C 1 HETATM 27 C C34 CDL . . . Y 14 126.682 142.954 148.965 1 89.42 ? C34 CDL 505 C 1 HETATM 28 C C35 CDL . . . Y 14 126.781 143.307 147.472 1 93.64 ? C35 CDL 505 C 1 HETATM 29 C C36 CDL . . . Y 14 125.49 143.16 146.662 1 98.31 ? C36 CDL 505 C 1 HETATM 30 C C37 CDL . . . Y 14 125.657 143.274 145.153 1 99.25 ? C37 CDL 505 C 1 HETATM 31 C CB2 CDL . . . Y 14 136.005 145.757 159.471 1 112.13 ? CB2 CDL 505 C 1 HETATM 32 O OB2 CDL . . . Y 14 135.03 146.769 159.118 1 117.04 ? OB2 CDL 505 C 1 HETATM 33 P PB2 CDL . . . Y 14 135.495 148.014 158.219 1 115.32 ? PB2 CDL 505 C 1 HETATM 34 O OB3 CDL . . . Y 14 135.091 149.225 159.012 1 117.61 ? OB3 CDL 505 C 1 HETATM 35 O OB4 CDL . . . Y 14 136.951 147.796 157.883 1 114.3 ? OB4 CDL 505 C 1 HETATM 36 O OB5 CDL . . . Y 14 134.547 147.82 156.93 1 112.5 ? OB5 CDL 505 C 1 HETATM 37 C CB3 CDL . . . Y 14 133.542 148.828 156.565 1 104.31 ? CB3 CDL 505 C 1 HETATM 38 C CB4 CDL . . . Y 14 133.12 148.687 155.111 1 100.13 ? CB4 CDL 505 C 1 HETATM 39 O OB6 CDL . . . Y 14 134.136 148.753 154.039 1 94.63 ? OB6 CDL 505 C 1 HETATM 40 C CB5 CDL . . . Y 14 134.728 149.912 153.634 1 90.61 ? CB5 CDL 505 C 1 HETATM 41 O OB7 CDL . . . Y 14 135.123 150.733 154.422 1 96.66 ? OB7 CDL 505 C 1 HETATM 42 C C51 CDL . . . Y 14 134.929 150.054 152.121 1 87.63 ? C51 CDL 505 C 1 HETATM 43 C C52 CDL . . . Y 14 136.212 150.742 151.697 1 78.32 ? C52 CDL 505 C 1 HETATM 44 C CB6 CDL . . . Y 14 131.813 149.385 154.774 1 105.29 ? CB6 CDL 505 C 1 HETATM 45 O OB8 CDL . . . Y 14 130.753 148.722 155.508 1 107.55 ? OB8 CDL 505 C 1 HETATM 46 C CB7 CDL . . . Y 14 129.66 148.296 154.854 1 111.37 ? CB7 CDL 505 C 1 HETATM 47 O OB9 CDL . . . Y 14 129.57 148.163 153.653 1 109.75 ? OB9 CDL 505 C 1 HETATM 48 C C71 CDL . . . Y 14 128.532 147.972 155.809 1 111.81 ? C71 CDL 505 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #