data_8ABG # _model_server_result.job_id ZAM839ncgIYEz_NVqtCQew _model_server_result.datetime_utc '2024-10-11 11:15:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":3001}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 VA N N ? 14 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . SA 14 131.122 161.361 157.745 1 48.53 ? C1 CDL 3001 L 1 HETATM 2 O O1 CDL . . . SA 14 130.608 161.287 159.073 1 50.42 ? O1 CDL 3001 L 1 HETATM 3 C CA2 CDL . . . SA 14 132.593 161.025 157.788 1 49.13 ? CA2 CDL 3001 L 1 HETATM 4 O OA2 CDL . . . SA 14 133.24 162.3 158.024 1 51.08 ? OA2 CDL 3001 L 1 HETATM 5 P PA1 CDL . . . SA 14 134.829 162.398 158.21 1 49.51 ? PA1 CDL 3001 L 1 HETATM 6 O OA3 CDL . . . SA 14 135.383 161.184 158.897 1 53.59 ? OA3 CDL 3001 L 1 HETATM 7 O OA4 CDL . . . SA 14 135.023 163.741 158.855 1 54.75 ? OA4 CDL 3001 L 1 HETATM 8 O OA5 CDL . . . SA 14 135.32 162.363 156.681 1 54.03 ? OA5 CDL 3001 L 1 HETATM 9 C CA3 CDL . . . SA 14 135.316 163.582 155.918 1 59.42 ? CA3 CDL 3001 L 1 HETATM 10 C CA4 CDL . . . SA 14 134.411 163.483 154.71 1 69.81 ? CA4 CDL 3001 L 1 HETATM 11 O OA6 CDL . . . SA 14 133.641 162.249 154.567 1 70.75 ? OA6 CDL 3001 L 1 HETATM 12 C CA6 CDL . . . SA 14 135.147 163.791 153.43 1 75.84 ? CA6 CDL 3001 L 1 HETATM 13 O OA8 CDL . . . SA 14 135.65 165.144 153.528 1 80.52 ? OA8 CDL 3001 L 1 HETATM 14 C CA7 CDL . . . SA 14 136.153 165.692 152.419 1 83.9 ? CA7 CDL 3001 L 1 HETATM 15 O OA9 CDL . . . SA 14 135.518 166.425 151.703 1 83.68 ? OA9 CDL 3001 L 1 HETATM 16 C C31 CDL . . . SA 14 137.611 165.32 152.185 1 81.2 ? C31 CDL 3001 L 1 HETATM 17 C C32 CDL . . . SA 14 138.103 165.578 150.779 1 82.49 ? C32 CDL 3001 L 1 HETATM 18 C C33 CDL . . . SA 14 139.62 165.644 150.677 1 82.22 ? C33 CDL 3001 L 1 HETATM 19 C C34 CDL . . . SA 14 140.161 165.176 149.351 1 83.82 ? C34 CDL 3001 L 1 HETATM 20 C C35 CDL . . . SA 14 141.287 166.018 148.79 1 83.15 ? C35 CDL 3001 L 1 HETATM 21 C C36 CDL . . . SA 14 142.018 165.381 147.629 1 87.41 ? C36 CDL 3001 L 1 HETATM 22 C C37 CDL . . . SA 14 143.37 165.988 147.322 1 91 ? C37 CDL 3001 L 1 HETATM 23 C CB2 CDL . . . SA 14 130.849 162.751 157.216 1 47.95 ? CB2 CDL 3001 L 1 HETATM 24 O OB2 CDL . . . SA 14 130.068 162.603 156.045 1 50.74 ? OB2 CDL 3001 L 1 HETATM 25 P PB2 CDL . . . SA 14 128.916 163.656 155.685 1 42.7 ? PB2 CDL 3001 L 1 HETATM 26 O OB3 CDL . . . SA 14 129.279 165.105 155.856 1 48.24 ? OB3 CDL 3001 L 1 HETATM 27 O OB4 CDL . . . SA 14 127.693 163.136 156.371 1 46.77 ? OB4 CDL 3001 L 1 HETATM 28 O OB5 CDL . . . SA 14 128.998 163.199 154.153 1 49.26 ? OB5 CDL 3001 L 1 HETATM 29 C CB3 CDL . . . SA 14 129.015 161.781 153.873 1 53.97 ? CB3 CDL 3001 L 1 HETATM 30 C CB4 CDL . . . SA 14 129.453 161.606 152.444 1 60.3 ? CB4 CDL 3001 L 1 HETATM 31 O OB6 CDL . . . SA 14 130.751 161.051 152.755 1 65.53 ? OB6 CDL 3001 L 1 HETATM 32 C CB6 CDL . . . SA 14 129.612 162.939 151.743 1 63.67 ? CB6 CDL 3001 L 1 HETATM 33 O OB8 CDL . . . SA 14 129.08 162.933 150.401 1 68.15 ? OB8 CDL 3001 L 1 HETATM 34 C CB7 CDL . . . SA 14 127.76 162.967 150.208 1 72.93 ? CB7 CDL 3001 L 1 HETATM 35 O OB9 CDL . . . SA 14 127.024 162.05 150.448 1 77.76 ? OB9 CDL 3001 L 1 HETATM 36 C C71 CDL . . . SA 14 127.348 164.198 149.459 1 71.78 ? C71 CDL 3001 L 1 HETATM 37 C C72 CDL . . . SA 14 128.384 164.667 148.5 1 71.61 ? C72 CDL 3001 L 1 HETATM 38 C C73 CDL . . . SA 14 127.987 164.449 147.054 1 72.5 ? C73 CDL 3001 L 1 HETATM 39 C C74 CDL . . . SA 14 128.364 165.591 146.14 1 69.48 ? C74 CDL 3001 L 1 HETATM 40 C C75 CDL . . . SA 14 128.617 165.185 144.694 1 71.26 ? C75 CDL 3001 L 1 HETATM 41 C C76 CDL . . . SA 14 128.764 166.337 143.707 1 73.73 ? C76 CDL 3001 L 1 HETATM 42 C C77 CDL . . . SA 14 128.944 165.927 142.25 1 72.5 ? C77 CDL 3001 L 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #