data_8ABG # _model_server_result.job_id 4HkOIqSLSAaa1qb6zZU9tw _model_server_result.datetime_utc '2024-10-11 11:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":3002}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 VA N N ? 14 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . EA 14 172.078 147.41 161.966 1 70.24 ? C1 CDL 3002 A 1 HETATM 2 O O1 CDL . . . EA 14 172.105 148.34 163.043 1 75.45 ? O1 CDL 3002 A 1 HETATM 3 C CA2 CDL . . . EA 14 170.801 146.616 162.031 1 68.27 ? CA2 CDL 3002 A 1 HETATM 4 O OA2 CDL . . . EA 14 170.666 146.117 160.698 1 60.91 ? OA2 CDL 3002 A 1 HETATM 5 P PA1 CDL . . . EA 14 170.429 144.554 160.438 1 54.11 ? PA1 CDL 3002 A 1 HETATM 6 O OA3 CDL . . . EA 14 170.963 143.577 161.444 1 59.23 ? OA3 CDL 3002 A 1 HETATM 7 O OA4 CDL . . . EA 14 169.019 144.428 159.931 1 58.25 ? OA4 CDL 3002 A 1 HETATM 8 O OA5 CDL . . . EA 14 171.558 144.389 159.319 1 59.74 ? OA5 CDL 3002 A 1 HETATM 9 C CA3 CDL . . . EA 14 171.651 145.372 158.261 1 64.45 ? CA3 CDL 3002 A 1 HETATM 10 C CA4 CDL . . . EA 14 171.695 144.509 157.027 1 71.37 ? CA4 CDL 3002 A 1 HETATM 11 O OA6 CDL . . . EA 14 173.108 144.198 156.838 1 74.01 ? OA6 CDL 3002 A 1 HETATM 12 C CA5 CDL . . . EA 14 173.809 144.886 155.932 1 76.68 ? CA5 CDL 3002 A 1 HETATM 13 O OA7 CDL . . . EA 14 173.924 146.083 155.966 1 84.96 ? OA7 CDL 3002 A 1 HETATM 14 C C11 CDL . . . EA 14 174.369 143.972 154.894 1 76.05 ? C11 CDL 3002 A 1 HETATM 15 C C12 CDL . . . EA 14 175.777 144.282 154.526 1 82.27 ? C12 CDL 3002 A 1 HETATM 16 C C13 CDL . . . EA 14 175.869 145.248 153.352 1 87.04 ? C13 CDL 3002 A 1 HETATM 17 C C14 CDL . . . EA 14 175.242 144.772 152.054 1 90.65 ? C14 CDL 3002 A 1 HETATM 18 C C15 CDL . . . EA 14 176.217 144.596 150.912 1 96 ? C15 CDL 3002 A 1 HETATM 19 C C16 CDL . . . EA 14 175.854 145.331 149.638 1 100.93 ? C16 CDL 3002 A 1 HETATM 20 C CA6 CDL . . . EA 14 170.902 145.038 155.844 1 74.25 ? CA6 CDL 3002 A 1 HETATM 21 O OA8 CDL . . . EA 14 169.508 144.679 156.017 1 78.8 ? OA8 CDL 3002 A 1 HETATM 22 C CA7 CDL . . . EA 14 168.897 144.028 155.023 1 82.27 ? CA7 CDL 3002 A 1 HETATM 23 O OA9 CDL . . . EA 14 169.465 143.263 154.28 1 86.78 ? OA9 CDL 3002 A 1 HETATM 24 C C31 CDL . . . EA 14 167.424 144.391 154.951 1 82.19 ? C31 CDL 3002 A 1 HETATM 25 C C32 CDL . . . EA 14 166.469 143.224 154.876 1 80.89 ? C32 CDL 3002 A 1 HETATM 26 C C33 CDL . . . EA 14 165.342 143.469 153.875 1 81.31 ? C33 CDL 3002 A 1 HETATM 27 C C34 CDL . . . EA 14 164.132 142.549 153.99 1 80.48 ? C34 CDL 3002 A 1 HETATM 28 C C35 CDL . . . EA 14 162.905 143.014 153.21 1 78.81 ? C35 CDL 3002 A 1 HETATM 29 C C36 CDL . . . EA 14 162.105 141.909 152.545 1 79.78 ? C36 CDL 3002 A 1 HETATM 30 C C37 CDL . . . EA 14 162.067 141.984 151.034 1 82.85 ? C37 CDL 3002 A 1 HETATM 31 C CB2 CDL . . . EA 14 173.304 146.537 162.038 1 72.28 ? CB2 CDL 3002 A 1 HETATM 32 O OB2 CDL . . . EA 14 174.186 146.934 160.973 1 75.42 ? OB2 CDL 3002 A 1 HETATM 33 P PB2 CDL . . . EA 14 175.478 146.031 160.679 1 74.77 ? PB2 CDL 3002 A 1 HETATM 34 O OB3 CDL . . . EA 14 176.474 146.404 161.742 1 78.5 ? OB3 CDL 3002 A 1 HETATM 35 O OB4 CDL . . . EA 14 174.999 144.612 160.525 1 72.97 ? OB4 CDL 3002 A 1 HETATM 36 O OB5 CDL . . . EA 14 175.956 146.655 159.286 1 79.69 ? OB5 CDL 3002 A 1 HETATM 37 C CB3 CDL . . . EA 14 175.724 148.069 159.089 1 89.56 ? CB3 CDL 3002 A 1 HETATM 38 C CB4 CDL . . . EA 14 176.614 148.534 157.974 1 94.83 ? CB4 CDL 3002 A 1 HETATM 39 O OB6 CDL . . . EA 14 177.172 147.398 157.261 1 95.62 ? OB6 CDL 3002 A 1 HETATM 40 C CB5 CDL . . . EA 14 177.696 147.658 156.055 1 96.74 ? CB5 CDL 3002 A 1 HETATM 41 O OB7 CDL . . . EA 14 177.163 148.448 155.317 1 105.05 ? OB7 CDL 3002 A 1 HETATM 42 C C51 CDL . . . EA 14 178.991 146.96 155.741 1 93.24 ? C51 CDL 3002 A 1 HETATM 43 C C52 CDL . . . EA 14 179.181 146.668 154.276 1 92.94 ? C52 CDL 3002 A 1 HETATM 44 C C53 CDL . . . EA 14 179.864 147.796 153.516 1 93.52 ? C53 CDL 3002 A 1 HETATM 45 C C54 CDL . . . EA 14 180.309 147.428 152.092 1 96.92 ? C54 CDL 3002 A 1 HETATM 46 C C55 CDL . . . EA 14 179.21 147.391 151.028 1 102.2 ? C55 CDL 3002 A 1 HETATM 47 C C56 CDL . . . EA 14 179.668 147.043 149.608 1 103.7 ? C56 CDL 3002 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 47 #