data_8ABG # _model_server_result.job_id Y1cnISUB9C_ZZf4OmZNwnA _model_server_result.datetime_utc '2024-10-11 11:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":3002}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 VA N N ? 14 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . TA 14 129.827 155.051 161.516 1 70.28 ? C1 CDL 3002 L 1 HETATM 2 O O1 CDL . . . TA 14 129.807 154.09 162.567 1 74.23 ? O1 CDL 3002 L 1 HETATM 3 C CA2 CDL . . . TA 14 131.071 155.892 161.64 1 66.87 ? CA2 CDL 3002 L 1 HETATM 4 O OA2 CDL . . . TA 14 131.329 156.359 160.309 1 58.91 ? OA2 CDL 3002 L 1 HETATM 5 P PA1 CDL . . . TA 14 131.505 157.928 160.028 1 51.86 ? PA1 CDL 3002 L 1 HETATM 6 O OA3 CDL . . . TA 14 130.939 158.865 161.05 1 59.66 ? OA3 CDL 3002 L 1 HETATM 7 O OA4 CDL . . . TA 14 132.907 158.117 159.517 1 61.1 ? OA4 CDL 3002 L 1 HETATM 8 O OA5 CDL . . . TA 14 130.363 158.093 158.92 1 59.33 ? OA5 CDL 3002 L 1 HETATM 9 C CA3 CDL . . . TA 14 130.26 157.114 157.862 1 60.9 ? CA3 CDL 3002 L 1 HETATM 10 C CA4 CDL . . . TA 14 130.282 157.938 156.597 1 68.51 ? CA4 CDL 3002 L 1 HETATM 11 O OA6 CDL . . . TA 14 128.893 158.301 156.331 1 71.83 ? OA6 CDL 3002 L 1 HETATM 12 C CA5 CDL . . . TA 14 128.148 157.554 155.506 1 75.82 ? CA5 CDL 3002 L 1 HETATM 13 O OA7 CDL . . . TA 14 127.94 156.375 155.659 1 83.93 ? OA7 CDL 3002 L 1 HETATM 14 C C11 CDL . . . TA 14 127.632 158.433 154.418 1 77.55 ? C11 CDL 3002 L 1 HETATM 15 C C12 CDL . . . TA 14 126.226 158.146 154.031 1 81.34 ? C12 CDL 3002 L 1 HETATM 16 C C13 CDL . . . TA 14 126.11 157.145 152.889 1 84.16 ? C13 CDL 3002 L 1 HETATM 17 C C14 CDL . . . TA 14 126.989 157.417 151.689 1 88.61 ? C14 CDL 3002 L 1 HETATM 18 C C15 CDL . . . TA 14 126.255 157.95 150.477 1 93.35 ? C15 CDL 3002 L 1 HETATM 19 C C16 CDL . . . TA 14 125.645 156.889 149.58 1 93.79 ? C16 CDL 3002 L 1 HETATM 20 C CA6 CDL . . . TA 14 131.059 157.332 155.44 1 71.62 ? CA6 CDL 3002 L 1 HETATM 21 O OA8 CDL . . . TA 14 132.471 157.566 155.667 1 78.39 ? OA8 CDL 3002 L 1 HETATM 22 C CA7 CDL . . . TA 14 133.201 158.077 154.672 1 80.57 ? CA7 CDL 3002 L 1 HETATM 23 O OA9 CDL . . . TA 14 132.734 158.481 153.636 1 83.95 ? OA9 CDL 3002 L 1 HETATM 24 C C31 CDL . . . TA 14 134.676 158.042 155.001 1 78.54 ? C31 CDL 3002 L 1 HETATM 25 C C32 CDL . . . TA 14 135.465 159.175 154.417 1 78.67 ? C32 CDL 3002 L 1 HETATM 26 C C33 CDL . . . TA 14 136.691 158.696 153.645 1 81.05 ? C33 CDL 3002 L 1 HETATM 27 C C34 CDL . . . TA 14 137.868 159.66 153.645 1 80.1 ? C34 CDL 3002 L 1 HETATM 28 C C35 CDL . . . TA 14 139.062 159.239 152.796 1 78.81 ? C35 CDL 3002 L 1 HETATM 29 C C36 CDL . . . TA 14 139.731 160.372 152.046 1 79.28 ? C36 CDL 3002 L 1 HETATM 30 C C37 CDL . . . TA 14 139.74 160.209 150.541 1 82.23 ? C37 CDL 3002 L 1 HETATM 31 C CB2 CDL . . . TA 14 128.57 155.877 161.582 1 72.56 ? CB2 CDL 3002 L 1 HETATM 32 O OB2 CDL . . . TA 14 127.703 155.487 160.502 1 75.11 ? OB2 CDL 3002 L 1 HETATM 33 P PB2 CDL . . . TA 14 126.362 156.336 160.277 1 75.32 ? PB2 CDL 3002 L 1 HETATM 34 O OB3 CDL . . . TA 14 125.454 156.042 161.439 1 77.66 ? OB3 CDL 3002 L 1 HETATM 35 O OB4 CDL . . . TA 14 126.814 157.736 159.979 1 73.56 ? OB4 CDL 3002 L 1 HETATM 36 O OB5 CDL . . . TA 14 125.757 155.652 158.967 1 81.89 ? OB5 CDL 3002 L 1 HETATM 37 C CB3 CDL . . . TA 14 125.624 154.211 158.968 1 92.34 ? CB3 CDL 3002 L 1 HETATM 38 C CB4 CDL . . . TA 14 125.393 153.78 157.547 1 94.64 ? CB4 CDL 3002 L 1 HETATM 39 O OB6 CDL . . . TA 14 124.688 154.885 156.922 1 95.22 ? OB6 CDL 3002 L 1 HETATM 40 C CB5 CDL . . . TA 14 124.258 154.695 155.672 1 97.62 ? CB5 CDL 3002 L 1 HETATM 41 O OB7 CDL . . . TA 14 124.785 153.875 154.968 1 106.41 ? OB7 CDL 3002 L 1 HETATM 42 C C51 CDL . . . TA 14 123.095 155.564 155.294 1 94.08 ? C51 CDL 3002 L 1 HETATM 43 C C52 CDL . . . TA 14 122.812 155.582 153.825 1 92.35 ? C52 CDL 3002 L 1 HETATM 44 C C53 CDL . . . TA 14 121.919 154.436 153.373 1 91.87 ? C53 CDL 3002 L 1 HETATM 45 C C54 CDL . . . TA 14 121.354 154.574 151.955 1 95.16 ? C54 CDL 3002 L 1 HETATM 46 C C55 CDL . . . TA 14 122.299 155.183 150.926 1 97.76 ? C55 CDL 3002 L 1 HETATM 47 C C56 CDL . . . TA 14 121.848 155.104 149.476 1 100.32 ? C56 CDL 3002 L 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #