data_8ABG # _model_server_result.job_id J8vFvlquJiawDW6UCGnXXg _model_server_result.datetime_utc '2024-10-11 11:15:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":401}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 CA N N ? 13 OA N N ? 13 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . RA 13 166.547 126.164 128.98 1 66.2 ? C1 PTY 401 E 1 HETATM 2 C C2 PTY . . . RA 13 171.956 129.432 127.059 1 76.88 ? C2 PTY 401 E 1 HETATM 3 C C3 PTY . . . RA 13 170.984 129.555 125.912 1 76.58 ? C3 PTY 401 E 1 HETATM 4 O O4 PTY . . . RA 13 165.457 126.376 129.899 1 67.51 ? O4 PTY 401 E 1 HETATM 5 C C5 PTY . . . RA 13 167.053 126.295 126.52 1 68.01 ? C5 PTY 401 E 1 HETATM 6 C C6 PTY . . . RA 13 166.071 126.616 127.626 1 67.44 ? C6 PTY 401 E 1 HETATM 7 O O7 PTY . . . RA 13 165.731 128.03 127.66 1 68.11 ? O7 PTY 401 E 1 HETATM 8 C C8 PTY . . . RA 13 164.706 128.462 126.902 1 67.87 ? C8 PTY 401 E 1 HETATM 9 O O10 PTY . . . RA 13 164.283 127.892 125.931 1 71.2 ? O10 PTY 401 E 1 HETATM 10 C C11 PTY . . . RA 13 164.148 129.748 127.397 1 65.89 ? C11 PTY 401 E 1 HETATM 11 C C12 PTY . . . RA 13 163.796 129.678 128.831 1 70.5 ? C12 PTY 401 E 1 HETATM 12 C C13 PTY . . . RA 13 162.311 129.666 129.065 1 70.94 ? C13 PTY 401 E 1 HETATM 13 C C14 PTY . . . RA 13 161.86 128.501 129.895 1 70.21 ? C14 PTY 401 E 1 HETATM 14 C C15 PTY . . . RA 13 160.84 128.836 130.955 1 70.84 ? C15 PTY 401 E 1 HETATM 15 C C16 PTY . . . RA 13 160.815 130.281 131.418 1 69.72 ? C16 PTY 401 E 1 HETATM 16 C C17 PTY . . . RA 13 159.427 130.822 131.692 1 68.36 ? C17 PTY 401 E 1 HETATM 17 C C18 PTY . . . RA 13 159.373 132.33 131.953 1 68.34 ? C18 PTY 401 E 1 HETATM 18 C C19 PTY . . . RA 13 158.947 133.196 130.77 1 67.33 ? C19 PTY 401 E 1 HETATM 19 C C20 PTY . . . RA 13 159.372 134.664 130.84 1 65.36 ? C20 PTY 401 E 1 HETATM 20 C C30 PTY . . . RA 13 165.815 126.537 131.16 1 69.58 ? C30 PTY 401 E 1 HETATM 21 C C31 PTY . . . RA 13 164.975 127.55 131.809 1 71.89 ? C31 PTY 401 E 1 HETATM 22 O O30 PTY . . . RA 13 166.716 125.937 131.679 1 73.69 ? O30 PTY 401 E 1 HETATM 23 C C32 PTY . . . RA 13 164.169 127 132.893 1 71.32 ? C32 PTY 401 E 1 HETATM 24 C C33 PTY . . . RA 13 164.358 127.814 134.128 1 74.19 ? C33 PTY 401 E 1 HETATM 25 C C34 PTY . . . RA 13 163.052 128.205 134.756 1 78.34 ? C34 PTY 401 E 1 HETATM 26 C C35 PTY . . . RA 13 163.062 129.447 135.572 1 82.46 ? C35 PTY 401 E 1 HETATM 27 C C36 PTY . . . RA 13 164.346 129.752 136.299 1 85.79 ? C36 PTY 401 E 1 HETATM 28 C C37 PTY . . . RA 13 164.585 131.234 136.369 1 90.9 ? C37 PTY 401 E 1 HETATM 29 C C38 PTY . . . RA 13 164.011 131.994 135.183 1 93.86 ? C38 PTY 401 E 1 HETATM 30 C C39 PTY . . . RA 13 163.421 133.374 135.464 1 98.71 ? C39 PTY 401 E 1 HETATM 31 C C40 PTY . . . RA 13 164.394 134.411 135.968 1 99.75 ? C40 PTY 401 E 1 HETATM 32 C C41 PTY . . . RA 13 164.527 135.64 135.094 1 104.75 ? C41 PTY 401 E 1 HETATM 33 C C42 PTY . . . RA 13 165.212 136.82 135.76 1 112.49 ? C42 PTY 401 E 1 HETATM 34 C C43 PTY . . . RA 13 166.243 136.596 136.859 1 121.55 ? C43 PTY 401 E 1 HETATM 35 C C44 PTY . . . RA 13 167.659 137.096 136.62 1 122.07 ? C44 PTY 401 E 1 HETATM 36 P P1 PTY . . . RA 13 169.337 127.47 125.918 1 67.85 ? P1 PTY 401 E 1 HETATM 37 O O11 PTY . . . RA 13 169.679 129.003 126.25 1 73.04 ? O11 PTY 401 E 1 HETATM 38 O O12 PTY . . . RA 13 169.716 127.099 124.508 1 72.04 ? O12 PTY 401 E 1 HETATM 39 O O13 PTY . . . RA 13 169.876 126.686 127.082 1 73.19 ? O13 PTY 401 E 1 HETATM 40 O O14 PTY . . . RA 13 167.734 127.477 126.018 1 68.1 ? O14 PTY 401 E 1 HETATM 41 N N1 PTY . . . RA 13 172.809 128.252 126.877 1 79.19 ? N1 PTY 401 E 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #