data_8ABG # _model_server_result.job_id z06jIYMr2ZF0ss8K35eh9g _model_server_result.datetime_utc '2024-10-11 11:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":501}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . LA 11 154.564 161.946 122.702 1 26.7 ? CHA HEM 501 N 1 HETATM 2 C CHB HEM . . . LA 11 156.241 163.236 127.132 1 26.34 ? CHB HEM 501 N 1 HETATM 3 C CHC HEM . . . LA 11 153.239 160.05 129.197 1 26.4 ? CHC HEM 501 N 1 HETATM 4 C CHD HEM . . . LA 11 151.895 158.44 124.825 1 26.08 ? CHD HEM 501 N 1 HETATM 5 C C1A HEM . . . LA 11 155.195 162.573 123.768 1 26.46 ? C1A HEM 501 N 1 HETATM 6 C C2A HEM . . . LA 11 156.124 163.649 123.598 1 28.72 ? C2A HEM 501 N 1 HETATM 7 C C3A HEM . . . LA 11 156.595 164.006 124.824 1 28.1 ? C3A HEM 501 N 1 HETATM 8 C C4A HEM . . . LA 11 155.997 163.152 125.771 1 27.21 ? C4A HEM 501 N 1 HETATM 9 C CMA HEM . . . LA 11 157.579 165.112 125.138 1 26.58 ? CMA HEM 501 N 1 HETATM 10 C CAA HEM . . . LA 11 156.482 164.378 122.331 1 30.52 ? CAA HEM 501 N 1 HETATM 11 C CBA HEM . . . LA 11 155.214 165.231 122.065 1 33.15 ? CBA HEM 501 N 1 HETATM 12 C CGA HEM . . . LA 11 155.175 165.924 120.721 1 37.44 ? CGA HEM 501 N 1 HETATM 13 O O1A HEM . . . LA 11 154.342 165.661 119.807 1 37.9 ? O1A HEM 501 N 1 HETATM 14 O O2A HEM . . . LA 11 155.993 166.845 120.503 1 38.17 ? O2A HEM 501 N 1 HETATM 15 C C1B HEM . . . LA 11 155.522 162.506 128.068 1 25.76 ? C1B HEM 501 N 1 HETATM 16 C C2B HEM . . . LA 11 155.733 162.659 129.471 1 27.37 ? C2B HEM 501 N 1 HETATM 17 C C3B HEM . . . LA 11 154.88 161.735 130.042 1 26.37 ? C3B HEM 501 N 1 HETATM 18 C C4B HEM . . . LA 11 154.214 161.012 128.961 1 26.5 ? C4B HEM 501 N 1 HETATM 19 C CMB HEM . . . LA 11 156.724 163.641 130.143 1 26.39 ? CMB HEM 501 N 1 HETATM 20 C CAB HEM . . . LA 11 154.602 161.392 131.44 1 28.57 ? CAB HEM 501 N 1 HETATM 21 C CBB HEM . . . LA 11 155.493 161.69 132.351 1 30.59 ? CBB HEM 501 N 1 HETATM 22 C C1C HEM . . . LA 11 152.664 159.307 128.168 1 27.49 ? C1C HEM 501 N 1 HETATM 23 C C2C HEM . . . LA 11 151.862 158.171 128.37 1 27.93 ? C2C HEM 501 N 1 HETATM 24 C C3C HEM . . . LA 11 151.471 157.698 127.163 1 27.9 ? C3C HEM 501 N 1 HETATM 25 C C4C HEM . . . LA 11 152.079 158.535 126.177 1 26.44 ? C4C HEM 501 N 1 HETATM 26 C CMC HEM . . . LA 11 151.443 157.584 129.7 1 29.21 ? CMC HEM 501 N 1 HETATM 27 C CAC HEM . . . LA 11 150.612 156.507 127.057 1 31.51 ? CAC HEM 501 N 1 HETATM 28 C CBC HEM . . . LA 11 150.802 155.9 125.919 1 37.67 ? CBC HEM 501 N 1 HETATM 29 C C1D HEM . . . LA 11 152.531 159.326 123.937 1 25.58 ? C1D HEM 501 N 1 HETATM 30 C C2D HEM . . . LA 11 152.3 159.203 122.468 1 26.83 ? C2D HEM 501 N 1 HETATM 31 C C3D HEM . . . LA 11 153.06 160.164 121.883 1 26.97 ? C3D HEM 501 N 1 HETATM 32 C C4D HEM . . . LA 11 153.702 160.881 122.996 1 26.15 ? C4D HEM 501 N 1 HETATM 33 C CMD HEM . . . LA 11 151.434 158.174 121.736 1 26.13 ? CMD HEM 501 N 1 HETATM 34 C CAD HEM . . . LA 11 153.237 160.436 120.389 1 29.67 ? CAD HEM 501 N 1 HETATM 35 C CBD HEM . . . LA 11 152.128 161.251 119.745 1 33.28 ? CBD HEM 501 N 1 HETATM 36 C CGD HEM . . . LA 11 152.505 162.703 119.94 1 34.54 ? CGD HEM 501 N 1 HETATM 37 O O1D HEM . . . LA 11 153.618 163.207 119.645 1 34.64 ? O1D HEM 501 N 1 HETATM 38 O O2D HEM . . . LA 11 151.673 163.429 120.472 1 36.36 ? O2D HEM 501 N 1 HETATM 39 N NA HEM . . . LA 11 155.164 162.276 125.123 1 26.37 ? NA HEM 501 N 1 HETATM 40 N NB HEM . . . LA 11 154.626 161.542 127.816 1 26.08 ? NB HEM 501 N 1 HETATM 41 N NC HEM . . . LA 11 152.794 159.501 126.844 1 26.41 ? NC HEM 501 N 1 HETATM 42 N ND HEM . . . LA 11 153.372 160.345 124.209 1 25.37 ? ND HEM 501 N 1 HETATM 43 FE FE HEM . . . LA 11 153.961 160.924 125.92 1 24.69 ? FE HEM 501 N 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #