data_8ABG # _model_server_result.job_id hN_6UatTqnAVrPwwei99uw _model_server_result.datetime_utc '2024-10-11 11:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":501}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . U 11 147.801 139.692 122.91 1 25.79 ? CHA HEM 501 C 1 HETATM 2 C CHB HEM . . . U 11 146.05 138.481 127.364 1 24.82 ? CHB HEM 501 C 1 HETATM 3 C CHC HEM . . . U 11 149.035 141.741 129.391 1 26.55 ? CHC HEM 501 C 1 HETATM 4 C CHD HEM . . . U 11 150.425 143.217 125.03 1 25.3 ? CHD HEM 501 C 1 HETATM 5 C C1A HEM . . . U 11 147.168 139.088 123.984 1 26.02 ? C1A HEM 501 C 1 HETATM 6 C C2A HEM . . . U 11 146.235 138.026 123.826 1 26.73 ? C2A HEM 501 C 1 HETATM 7 C C3A HEM . . . U 11 145.715 137.684 125.034 1 26.32 ? C3A HEM 501 C 1 HETATM 8 C C4A HEM . . . U 11 146.296 138.549 125.989 1 25.56 ? C4A HEM 501 C 1 HETATM 9 C CMA HEM . . . U 11 144.721 136.565 125.311 1 25.19 ? CMA HEM 501 C 1 HETATM 10 C CAA HEM . . . U 11 145.917 137.316 122.555 1 29.45 ? CAA HEM 501 C 1 HETATM 11 C CBA HEM . . . U 11 147.171 136.42 122.327 1 33.08 ? CBA HEM 501 C 1 HETATM 12 C CGA HEM . . . U 11 147.238 135.678 121.007 1 34.74 ? CGA HEM 501 C 1 HETATM 13 O O1A HEM . . . U 11 148.071 135.929 120.094 1 36.23 ? O1A HEM 501 C 1 HETATM 14 O O2A HEM . . . U 11 146.421 134.753 120.804 1 36.18 ? O2A HEM 501 C 1 HETATM 15 C C1B HEM . . . U 11 146.757 139.242 128.297 1 25.61 ? C1B HEM 501 C 1 HETATM 16 C C2B HEM . . . U 11 146.545 139.12 129.698 1 26.43 ? C2B HEM 501 C 1 HETATM 17 C C3B HEM . . . U 11 147.391 140.058 130.259 1 26.06 ? C3B HEM 501 C 1 HETATM 18 C C4B HEM . . . U 11 148.093 140.741 129.17 1 25.77 ? C4B HEM 501 C 1 HETATM 19 C CMB HEM . . . U 11 145.577 138.149 130.376 1 26.22 ? CMB HEM 501 C 1 HETATM 20 C CAB HEM . . . U 11 147.641 140.423 131.656 1 27.84 ? CAB HEM 501 C 1 HETATM 21 C CBB HEM . . . U 11 146.743 140.161 132.59 1 29.08 ? CBB HEM 501 C 1 HETATM 22 C C1C HEM . . . U 11 149.607 142.466 128.355 1 26.43 ? C1C HEM 501 C 1 HETATM 23 C C2C HEM . . . U 11 150.428 143.579 128.556 1 27.77 ? C2C HEM 501 C 1 HETATM 24 C C3C HEM . . . U 11 150.838 144.021 127.338 1 27.3 ? C3C HEM 501 C 1 HETATM 25 C C4C HEM . . . U 11 150.224 143.163 126.366 1 25.75 ? C4C HEM 501 C 1 HETATM 26 C CMC HEM . . . U 11 150.827 144.16 129.897 1 27.27 ? CMC HEM 501 C 1 HETATM 27 C CAC HEM . . . U 11 151.712 145.2 127.197 1 29.73 ? CAC HEM 501 C 1 HETATM 28 C CBC HEM . . . U 11 151.496 145.791 126.045 1 34.72 ? CBC HEM 501 C 1 HETATM 29 C C1D HEM . . . U 11 149.812 142.307 124.149 1 25.43 ? C1D HEM 501 C 1 HETATM 30 C C2D HEM . . . U 11 150.075 142.407 122.682 1 26.58 ? C2D HEM 501 C 1 HETATM 31 C C3D HEM . . . U 11 149.334 141.426 122.092 1 27.28 ? C3D HEM 501 C 1 HETATM 32 C C4D HEM . . . U 11 148.647 140.748 123.189 1 25.95 ? C4D HEM 501 C 1 HETATM 33 C CMD HEM . . . U 11 150.977 143.424 121.981 1 25.5 ? CMD HEM 501 C 1 HETATM 34 C CAD HEM . . . U 11 149.167 141.116 120.614 1 29.59 ? CAD HEM 501 C 1 HETATM 35 C CBD HEM . . . U 11 150.274 140.277 120.015 1 33.83 ? CBD HEM 501 C 1 HETATM 36 C CGD HEM . . . U 11 149.878 138.838 120.206 1 34.78 ? CGD HEM 501 C 1 HETATM 37 O O1D HEM . . . U 11 148.777 138.343 119.879 1 35.8 ? O1D HEM 501 C 1 HETATM 38 O O2D HEM . . . U 11 150.683 138.106 120.753 1 36.37 ? O2D HEM 501 C 1 HETATM 39 N NA HEM . . . U 11 147.167 139.4 125.334 1 25.64 ? NA HEM 501 C 1 HETATM 40 N NB HEM . . . U 11 147.688 140.186 128.038 1 25.6 ? NB HEM 501 C 1 HETATM 41 N NC HEM . . . U 11 149.5 142.224 127.042 1 25.8 ? NC HEM 501 C 1 HETATM 42 N ND HEM . . . U 11 148.959 141.299 124.403 1 26.2 ? ND HEM 501 C 1 HETATM 43 FE FE HEM . . . U 11 148.34 140.774 126.126 1 24.82 ? FE HEM 501 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #